data_5KCV # _model_server_result.job_id hjX9C6ZQsx-net_CNvvMdw _model_server_result.datetime_utc '2025-08-31 01:33:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kcv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 5KCV # _exptl.entry_id 5KCV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 432.52 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-[3-[4-(1-azanylcyclobutyl)phenyl]-5-phenyl-imidazo[4,5-b]pyridin-2-yl]pyridin-2-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KCV _cell.length_a 44.72 _cell.length_b 87.62 _cell.length_c 128.79 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KCV _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 74 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 60 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 91 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 77 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.059 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C27 H24 N6' _chem_comp.formula_weight 432.52 _chem_comp.id 6S1 _chem_comp.mon_nstd_flag . _chem_comp.name 3-[3-[4-(1-azanylcyclobutyl)phenyl]-5-phenyl-imidazo[4,5-b]pyridin-2-yl]pyridin-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C26 C25 6S1 doub 1 n y C26 C27 6S1 sing 2 n y C25 C24 6S1 sing 3 n y C27 C22 6S1 doub 4 n y C24 C23 6S1 doub 5 n y C22 C23 6S1 sing 6 n y C22 C21 6S1 sing 7 n n C21 C20 6S1 doub 8 n y C21 N6 6S1 sing 9 n y C20 C19 6S1 sing 10 n y N6 C18 6S1 doub 11 n y C19 C17 6S1 doub 12 n y C18 C17 6S1 sing 13 n y C18 N2 6S1 sing 14 n y C3 C4 6S1 sing 15 n n C3 C2 6S1 sing 16 n n C17 N5 6S1 sing 17 n y C4 C1 6S1 sing 18 n n C9 C10 6S1 doub 19 n y C9 C8 6S1 sing 20 n y C10 C5 6S1 sing 21 n y N2 C8 6S1 sing 22 n n N2 C11 6S1 sing 23 n y C2 C1 6S1 sing 24 n n N5 C11 6S1 doub 25 n y C8 C7 6S1 doub 26 n y C5 C1 6S1 sing 27 n n C5 C6 6S1 doub 28 n y C7 C6 6S1 sing 29 n y C1 N1 6S1 sing 30 n n C11 C12 6S1 sing 31 n n N3 C13 6S1 sing 32 n n C12 C13 6S1 doub 33 n y C12 C16 6S1 sing 34 n y C13 N4 6S1 sing 35 n y C16 C15 6S1 doub 36 n y N4 C14 6S1 doub 37 n y C15 C14 6S1 sing 38 n y C3 H1 6S1 sing 39 n n C3 H2 6S1 sing 40 n n C6 H3 6S1 sing 41 n n C14 H4 6S1 sing 42 n n C9 H5 6S1 sing 43 n n C4 H6 6S1 sing 44 n n C4 H7 6S1 sing 45 n n C7 H8 6S1 sing 46 n n C2 H9 6S1 sing 47 n n C2 H10 6S1 sing 48 n n N1 H11 6S1 sing 49 n n N1 H12 6S1 sing 50 n n C10 H14 6S1 sing 51 n n C23 H15 6S1 sing 52 n n C24 H16 6S1 sing 53 n n C25 H17 6S1 sing 54 n n C26 H18 6S1 sing 55 n n C27 H19 6S1 sing 56 n n C20 H20 6S1 sing 57 n n C19 H21 6S1 sing 58 n n C16 H22 6S1 sing 59 n n C15 H23 6S1 sing 60 n n N3 H24 6S1 sing 61 n n N3 H25 6S1 sing 62 n n # _atom_sites.entry_id 5KCV _atom_sites.fract_transf_matrix[1][1] 0.022362 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011413 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007765 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6S1 A 1 501 1 6S1 092 . C 3 HOH A 1 601 22 HOH HOH . C 3 HOH A 2 602 58 HOH HOH . C 3 HOH A 3 603 35 HOH HOH . C 3 HOH A 4 604 45 HOH HOH . C 3 HOH A 5 605 6 HOH HOH . C 3 HOH A 6 606 42 HOH HOH . C 3 HOH A 7 607 83 HOH HOH . C 3 HOH A 8 608 23 HOH HOH . C 3 HOH A 9 609 80 HOH HOH . C 3 HOH A 10 610 49 HOH HOH . C 3 HOH A 11 611 24 HOH HOH . C 3 HOH A 12 612 92 HOH HOH . C 3 HOH A 13 613 38 HOH HOH . C 3 HOH A 14 614 9 HOH HOH . C 3 HOH A 15 615 41 HOH HOH . C 3 HOH A 16 616 78 HOH HOH . C 3 HOH A 17 617 47 HOH HOH . C 3 HOH A 18 618 40 HOH HOH . C 3 HOH A 19 619 79 HOH HOH . C 3 HOH A 20 620 87 HOH HOH . C 3 HOH A 21 621 77 HOH HOH . C 3 HOH A 22 622 88 HOH HOH . C 3 HOH A 23 623 48 HOH HOH . C 3 HOH A 24 624 17 HOH HOH . C 3 HOH A 25 625 28 HOH HOH . C 3 HOH A 26 626 36 HOH HOH . C 3 HOH A 27 627 18 HOH HOH . C 3 HOH A 28 628 97 HOH HOH . C 3 HOH A 29 629 70 HOH HOH . C 3 HOH A 30 630 10 HOH HOH . C 3 HOH A 31 631 3 HOH HOH . C 3 HOH A 32 632 63 HOH HOH . C 3 HOH A 33 633 4 HOH HOH . C 3 HOH A 34 634 25 HOH HOH . C 3 HOH A 35 635 20 HOH HOH . C 3 HOH A 36 636 44 HOH HOH . C 3 HOH A 37 637 93 HOH HOH . C 3 HOH A 38 638 46 HOH HOH . C 3 HOH A 39 639 61 HOH HOH . C 3 HOH A 40 640 34 HOH HOH . C 3 HOH A 41 641 2 HOH HOH . C 3 HOH A 42 642 75 HOH HOH . C 3 HOH A 43 643 81 HOH HOH . C 3 HOH A 44 644 76 HOH HOH . C 3 HOH A 45 645 5 HOH HOH . C 3 HOH A 46 646 94 HOH HOH . C 3 HOH A 47 647 99 HOH HOH . C 3 HOH A 48 648 68 HOH HOH . C 3 HOH A 49 649 14 HOH HOH . C 3 HOH A 50 650 84 HOH HOH . C 3 HOH A 51 651 8 HOH HOH . C 3 HOH A 52 652 90 HOH HOH . C 3 HOH A 53 653 16 HOH HOH . C 3 HOH A 54 654 19 HOH HOH . C 3 HOH A 55 655 15 HOH HOH . C 3 HOH A 56 656 31 HOH HOH . C 3 HOH A 57 657 98 HOH HOH . C 3 HOH A 58 658 1 HOH HOH . C 3 HOH A 59 659 74 HOH HOH . C 3 HOH A 60 660 52 HOH HOH . C 3 HOH A 61 661 59 HOH HOH . C 3 HOH A 62 662 27 HOH HOH . C 3 HOH A 63 663 54 HOH HOH . C 3 HOH A 64 664 56 HOH HOH . C 3 HOH A 65 665 7 HOH HOH . C 3 HOH A 66 666 82 HOH HOH . C 3 HOH A 67 667 43 HOH HOH . C 3 HOH A 68 668 91 HOH HOH . C 3 HOH A 69 669 86 HOH HOH . C 3 HOH A 70 670 73 HOH HOH . C 3 HOH A 71 671 65 HOH HOH . C 3 HOH A 72 672 53 HOH HOH . C 3 HOH A 73 673 96 HOH HOH . C 3 HOH A 74 674 100 HOH HOH . C 3 HOH A 75 675 101 HOH HOH . C 3 HOH A 76 676 95 HOH HOH . C 3 HOH A 77 677 89 HOH HOH . C 3 HOH A 78 678 85 HOH HOH . C 3 HOH A 79 679 67 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C5 6S1 . . . B 2 -11.893 0.298 -16.455 1 44.21 ? C5 6S1 501 A 1 HETATM 2 C C8 6S1 . . . B 2 -9.184 -0.525 -16.676 1 49.49 ? C8 6S1 501 A 1 HETATM 3 C C3 6S1 . . . B 2 -14.357 1.418 -17.973 1 39.48 ? C3 6S1 501 A 1 HETATM 4 C C6 6S1 . . . B 2 -11.5 -0.985 -16.164 1 43.51 ? C6 6S1 501 A 1 HETATM 5 C C1 6S1 . . . B 2 -13.272 0.654 -16.271 1 39.75 ? C1 6S1 501 A 1 HETATM 6 C C17 6S1 . . . B 2 -6.176 -1.6 -17.951 1 43.83 ? C17 6S1 501 A 1 HETATM 7 C C14 6S1 . . . B 2 -7.989 -2.918 -12.19 1 42.55 ? C14 6S1 501 A 1 HETATM 8 C C9 6S1 . . . B 2 -9.555 0.758 -17.01 1 49.38 ? C9 6S1 501 A 1 HETATM 9 C C4 6S1 . . . B 2 -14.218 0.051 -17.303 1 38.14 ? C4 6S1 501 A 1 HETATM 10 C C13 6S1 . . . B 2 -7.218 -3.543 -14.336 1 43.33 ? C13 6S1 501 A 1 HETATM 11 C C7 6S1 . . . B 2 -10.196 -1.387 -16.286 1 44.63 ? C7 6S1 501 A 1 HETATM 12 C C2 6S1 . . . B 2 -13.751 1.998 -16.764 1 40.96 ? C2 6S1 501 A 1 HETATM 13 C C18 6S1 . . . B 2 -7.311 -0.921 -18.013 1 41.13 ? C18 6S1 501 A 1 HETATM 14 N N1 6S1 . . . B 2 -13.686 0.455 -14.887 1 40.03 ? N1 6S1 501 A 1 HETATM 15 C C10 6S1 . . . B 2 -10.881 1.159 -16.881 1 51.85 ? C10 6S1 501 A 1 HETATM 16 N N2 6S1 . . . B 2 -7.937 -1.03 -16.844 1 46.61 ? N2 6S1 501 A 1 HETATM 17 N N6 6S1 . . . B 2 -7.668 -0.261 -19.118 1 39.98 ? N6 6S1 501 A 1 HETATM 18 C C21 6S1 . . . B 2 -6.869 -0.214 -20.192 1 44.68 ? C21 6S1 501 A 1 HETATM 19 C C22 6S1 . . . B 2 -7.274 0.528 -21.299 1 43.9 ? C22 6S1 501 A 1 HETATM 20 C C23 6S1 . . . B 2 -8.092 1.646 -21.084 1 40.25 ? C23 6S1 501 A 1 HETATM 21 C C24 6S1 . . . B 2 -8.513 2.417 -22.158 1 42.66 ? C24 6S1 501 A 1 HETATM 22 C C25 6S1 . . . B 2 -8.107 2.113 -23.46 1 45.65 ? C25 6S1 501 A 1 HETATM 23 C C26 6S1 . . . B 2 -7.289 1.003 -23.664 1 46.53 ? C26 6S1 501 A 1 HETATM 24 C C27 6S1 . . . B 2 -6.867 0.203 -22.601 1 44.19 ? C27 6S1 501 A 1 HETATM 25 C C20 6S1 . . . B 2 -5.651 -0.907 -20.154 1 44.6 ? C20 6S1 501 A 1 HETATM 26 C C19 6S1 . . . B 2 -5.329 -1.602 -18.992 1 44.48 ? C19 6S1 501 A 1 HETATM 27 N N5 6S1 . . . B 2 -6.108 -2.182 -16.748 1 46.48 ? N5 6S1 501 A 1 HETATM 28 C C11 6S1 . . . B 2 -7.19 -1.838 -16.062 1 44.83 ? C11 6S1 501 A 1 HETATM 29 C C12 6S1 . . . B 2 -7.443 -2.241 -14.801 1 41.71 ? C12 6S1 501 A 1 HETATM 30 C C16 6S1 . . . B 2 -7.936 -1.3 -13.911 1 42.78 ? C16 6S1 501 A 1 HETATM 31 C C15 6S1 . . . B 2 -8.2 -1.603 -12.593 1 40.6 ? C15 6S1 501 A 1 HETATM 32 N N4 6S1 . . . B 2 -7.498 -3.895 -13.083 1 41.34 ? N4 6S1 501 A 1 HETATM 33 N N3 6S1 . . . B 2 -6.75 -4.45 -15.185 1 45.21 ? N3 6S1 501 A 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 391 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 33 #