data_5KCY # _model_server_result.job_id lzOeRy2K-DiQsiidpRK0EA _model_server_result.datetime_utc '2024-11-05 03:29:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kcy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 5KCY # _exptl.entry_id 5KCY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.326 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'methyl (2~{R})-3-(4-hydroxyphenyl)-2-[(4-hydroxyphenyl)methyl]-4-oxidanyl-5-oxidanylidene-furan-2-carboxylate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KCY _cell.length_a 96.95 _cell.length_b 134.91 _cell.length_c 68.69 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KCY _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_755 -x+2,-y,z -1 0 0 0 -1 0 0 0 1 193.9 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C19 H16 O7' _chem_comp.formula_weight 356.326 _chem_comp.id XBU _chem_comp.mon_nstd_flag . _chem_comp.name 'methyl (2~{R})-3-(4-hydroxyphenyl)-2-[(4-hydroxyphenyl)methyl]-4-oxidanyl-5-oxidanylidene-furan-2-carboxylate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAN CAK XBU sing 414 n n CBB OAZ XBU sing 415 n n CAK CAJ XBU doub 416 n y CAK CAL XBU sing 417 n y CAJ CAI XBU sing 418 n y CAL CAM XBU doub 419 n y OAY CAX XBU doub 420 n n OAZ CAX XBU sing 421 n n CAX CAB XBU sing 422 n n CAI CAH XBU doub 423 n y CAM CAH XBU sing 424 n y CAH CAF XBU sing 425 n n OAC CAB XBU sing 426 n n OAC CAD XBU sing 427 n n CAB CAF XBU sing 428 n n CAB CAA XBU sing 429 n n CAD OAP XBU doub 430 n n CAD CAE XBU sing 431 n n CAA CAE XBU doub 432 n n CAA CAQ XBU sing 433 n n CAV CAU XBU doub 434 n y CAV CAQ XBU sing 435 n y CAE OAO XBU sing 436 n n CAU CAT XBU sing 437 n y CAQ CAR XBU doub 438 n y CAT OAW XBU sing 439 n n CAT CAS XBU doub 440 n y CAR CAS XBU sing 441 n y CAI H1 XBU sing 442 n n CAJ H2 XBU sing 443 n n OAN H3 XBU sing 444 n n CAL H4 XBU sing 445 n n CAM H5 XBU sing 446 n n CAF H6 XBU sing 447 n n CAF H7 XBU sing 448 n n CBB H8 XBU sing 449 n n CBB H9 XBU sing 450 n n CBB H10 XBU sing 451 n n OAO H11 XBU sing 452 n n CAR H12 XBU sing 453 n n CAS H13 XBU sing 454 n n OAW H14 XBU sing 455 n n CAU H15 XBU sing 456 n n CAV H16 XBU sing 457 n n # _atom_sites.entry_id 5KCY _atom_sites.fract_transf_matrix[1][1] 0.010315 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007412 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014558 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 XBU A 1 501 1 XBU DBU . D 3 GST A 1 502 3 GST GPP . E 2 XBU B 1 501 2 XBU DBU . F 3 GST B 1 502 4 GST GPP . G 4 HOH A 1 601 151 HOH HOH . G 4 HOH A 2 602 7 HOH HOH . G 4 HOH A 3 603 22 HOH HOH . G 4 HOH A 4 604 68 HOH HOH . G 4 HOH A 5 605 61 HOH HOH . G 4 HOH A 6 606 30 HOH HOH . G 4 HOH A 7 607 6 HOH HOH . G 4 HOH A 8 608 9 HOH HOH . G 4 HOH A 9 609 101 HOH HOH . G 4 HOH A 10 610 106 HOH HOH . G 4 HOH A 11 611 26 HOH HOH . G 4 HOH A 12 612 3 HOH HOH . G 4 HOH A 13 613 121 HOH HOH . G 4 HOH A 14 614 49 HOH HOH . G 4 HOH A 15 615 21 HOH HOH . G 4 HOH A 16 616 70 HOH HOH . G 4 HOH A 17 617 56 HOH HOH . G 4 HOH A 18 618 27 HOH HOH . G 4 HOH A 19 619 127 HOH HOH . G 4 HOH A 20 620 14 HOH HOH . G 4 HOH A 21 621 66 HOH HOH . G 4 HOH A 22 622 103 HOH HOH . G 4 HOH A 23 623 12 HOH HOH . G 4 HOH A 24 624 99 HOH HOH . G 4 HOH A 25 625 20 HOH HOH . G 4 HOH A 26 626 40 HOH HOH . G 4 HOH A 27 627 107 HOH HOH . G 4 HOH A 28 628 24 HOH HOH . G 4 HOH A 29 629 33 HOH HOH . G 4 HOH A 30 630 52 HOH HOH . G 4 HOH A 31 631 81 HOH HOH . G 4 HOH A 32 632 19 HOH HOH . G 4 HOH A 33 633 84 HOH HOH . G 4 HOH A 34 634 60 HOH HOH . G 4 HOH A 35 635 46 HOH HOH . G 4 HOH A 36 636 102 HOH HOH . H 4 HOH B 1 601 33 HOH HOH . H 4 HOH B 2 602 11 HOH HOH . H 4 HOH B 3 603 24 HOH HOH . H 4 HOH B 4 604 37 HOH HOH . H 4 HOH B 5 605 36 HOH HOH . H 4 HOH B 6 606 13 HOH HOH . H 4 HOH B 7 607 18 HOH HOH . H 4 HOH B 8 608 76 HOH HOH . H 4 HOH B 9 609 25 HOH HOH . H 4 HOH B 10 610 65 HOH HOH . H 4 HOH B 11 611 42 HOH HOH . H 4 HOH B 12 612 158 HOH HOH . H 4 HOH B 13 613 47 HOH HOH . H 4 HOH B 14 614 39 HOH HOH . H 4 HOH B 15 615 85 HOH HOH . H 4 HOH B 16 616 72 HOH HOH . H 4 HOH B 17 617 15 HOH HOH . H 4 HOH B 18 618 90 HOH HOH . H 4 HOH B 19 619 54 HOH HOH . H 4 HOH B 20 620 31 HOH HOH . H 4 HOH B 21 621 36 HOH HOH . H 4 HOH B 22 622 68 HOH HOH . H 4 HOH B 23 623 31 HOH HOH . H 4 HOH B 24 624 32 HOH HOH . H 4 HOH B 25 625 1 HOH HOH . H 4 HOH B 26 626 8 HOH HOH . H 4 HOH B 27 627 110 HOH HOH . H 4 HOH B 28 628 64 HOH HOH . H 4 HOH B 29 629 88 HOH HOH . H 4 HOH B 30 630 105 HOH HOH . H 4 HOH B 31 631 91 HOH HOH . H 4 HOH B 32 632 147 HOH HOH . H 4 HOH B 33 633 51 HOH HOH . H 4 HOH B 34 634 72 HOH HOH . H 4 HOH B 35 635 51 HOH HOH . H 4 HOH B 36 636 45 HOH HOH . H 4 HOH B 37 637 98 HOH HOH . H 4 HOH B 38 638 28 HOH HOH . H 4 HOH B 39 639 161 HOH HOH . H 4 HOH B 40 640 85 HOH HOH . H 4 HOH B 41 641 46 HOH HOH . H 4 HOH B 42 642 63 HOH HOH . H 4 HOH B 43 643 4 HOH HOH . H 4 HOH B 44 644 116 HOH HOH . H 4 HOH B 45 645 79 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAI XBU . . . C 2 97.854 31.876 56.959 1 45.51 ? CAI XBU 501 A 1 HETATM 2 C CAJ XBU . . . C 2 97.632 32.85 55.976 1 43.57 ? CAJ XBU 501 A 1 HETATM 3 C CAK XBU . . . C 2 98.667 33.632 55.525 1 39.93 ? CAK XBU 501 A 1 HETATM 4 O OAN XBU . . . C 2 98.348 34.554 54.593 1 44.44 ? OAN XBU 501 A 1 HETATM 5 C CAL XBU . . . C 2 99.949 33.417 56.049 1 39.12 ? CAL XBU 501 A 1 HETATM 6 C CAM XBU . . . C 2 100.185 32.418 57.029 1 40.89 ? CAM XBU 501 A 1 HETATM 7 C CAH XBU . . . C 2 99.117 31.6 57.492 1 40.84 ? CAH XBU 501 A 1 HETATM 8 C CAF XBU . . . C 2 99.183 30.555 58.459 1 42.43 ? CAF XBU 501 A 1 HETATM 9 C CAB XBU . . . C 2 99.971 29.246 58.007 1 44.79 ? CAB XBU 501 A 1 HETATM 10 C CAX XBU . . . C 2 99.563 28.594 56.778 1 48.72 ? CAX XBU 501 A 1 HETATM 11 O OAY XBU . . . C 2 100.35 27.831 56.201 1 50.07 ? OAY XBU 501 A 1 HETATM 12 O OAZ XBU . . . C 2 98.301 28.859 56.275 1 54.54 ? OAZ XBU 501 A 1 HETATM 13 C CBB XBU . . . C 2 98.101 28.462 54.885 1 55.04 ? CBB XBU 501 A 1 HETATM 14 O OAC XBU . . . C 2 101.322 29.734 57.763 1 46.88 ? OAC XBU 501 A 1 HETATM 15 C CAD XBU . . . C 2 102.126 29.033 58.568 1 44.11 ? CAD XBU 501 A 1 HETATM 16 O OAP XBU . . . C 2 103.354 29.194 58.59 1 44.1 ? OAP XBU 501 A 1 HETATM 17 C CAE XBU . . . C 2 101.485 28.15 59.35 1 42.04 ? CAE XBU 501 A 1 HETATM 18 O OAO XBU . . . C 2 102.232 27.416 60.261 1 38.1 ? OAO XBU 501 A 1 HETATM 19 C CAA XBU . . . C 2 100.126 28.253 59.125 1 40.98 ? CAA XBU 501 A 1 HETATM 20 C CAQ XBU . . . C 2 99.156 27.409 59.706 1 38.49 ? CAQ XBU 501 A 1 HETATM 21 C CAR XBU . . . C 2 99.403 26.6 60.845 1 39.11 ? CAR XBU 501 A 1 HETATM 22 C CAS XBU . . . C 2 98.455 25.705 61.374 1 43.94 ? CAS XBU 501 A 1 HETATM 23 C CAT XBU . . . C 2 97.196 25.574 60.784 1 43.08 ? CAT XBU 501 A 1 HETATM 24 O OAW XBU . . . C 2 96.271 24.735 61.265 1 51.76 ? OAW XBU 501 A 1 HETATM 25 C CAU XBU . . . C 2 96.905 26.337 59.657 1 42.7 ? CAU XBU 501 A 1 HETATM 26 C CAV XBU . . . C 2 97.867 27.216 59.152 1 38.2 ? CAV XBU 501 A 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 26 #