data_5KCY # _model_server_result.job_id Az4aR4IAPTsUr4G1kpAHyw _model_server_result.datetime_utc '2024-11-05 03:30:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kcy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 5KCY # _exptl.entry_id 5KCY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.326 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'methyl (2~{R})-3-(4-hydroxyphenyl)-2-[(4-hydroxyphenyl)methyl]-4-oxidanyl-5-oxidanylidene-furan-2-carboxylate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KCY _cell.length_a 96.95 _cell.length_b 134.91 _cell.length_c 68.69 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KCY _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_755 -x+2,-y,z -1 0 0 0 -1 0 0 0 1 193.9 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C19 H16 O7' _chem_comp.formula_weight 356.326 _chem_comp.id XBU _chem_comp.mon_nstd_flag . _chem_comp.name 'methyl (2~{R})-3-(4-hydroxyphenyl)-2-[(4-hydroxyphenyl)methyl]-4-oxidanyl-5-oxidanylidene-furan-2-carboxylate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAN CAK XBU sing 414 n n CBB OAZ XBU sing 415 n n CAK CAJ XBU doub 416 n y CAK CAL XBU sing 417 n y CAJ CAI XBU sing 418 n y CAL CAM XBU doub 419 n y OAY CAX XBU doub 420 n n OAZ CAX XBU sing 421 n n CAX CAB XBU sing 422 n n CAI CAH XBU doub 423 n y CAM CAH XBU sing 424 n y CAH CAF XBU sing 425 n n OAC CAB XBU sing 426 n n OAC CAD XBU sing 427 n n CAB CAF XBU sing 428 n n CAB CAA XBU sing 429 n n CAD OAP XBU doub 430 n n CAD CAE XBU sing 431 n n CAA CAE XBU doub 432 n n CAA CAQ XBU sing 433 n n CAV CAU XBU doub 434 n y CAV CAQ XBU sing 435 n y CAE OAO XBU sing 436 n n CAU CAT XBU sing 437 n y CAQ CAR XBU doub 438 n y CAT OAW XBU sing 439 n n CAT CAS XBU doub 440 n y CAR CAS XBU sing 441 n y CAI H1 XBU sing 442 n n CAJ H2 XBU sing 443 n n OAN H3 XBU sing 444 n n CAL H4 XBU sing 445 n n CAM H5 XBU sing 446 n n CAF H6 XBU sing 447 n n CAF H7 XBU sing 448 n n CBB H8 XBU sing 449 n n CBB H9 XBU sing 450 n n CBB H10 XBU sing 451 n n OAO H11 XBU sing 452 n n CAR H12 XBU sing 453 n n CAS H13 XBU sing 454 n n OAW H14 XBU sing 455 n n CAU H15 XBU sing 456 n n CAV H16 XBU sing 457 n n # _atom_sites.entry_id 5KCY _atom_sites.fract_transf_matrix[1][1] 0.010315 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007412 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014558 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 XBU A 1 501 1 XBU DBU . D 3 GST A 1 502 3 GST GPP . E 2 XBU B 1 501 2 XBU DBU . F 3 GST B 1 502 4 GST GPP . G 4 HOH A 1 601 151 HOH HOH . G 4 HOH A 2 602 7 HOH HOH . G 4 HOH A 3 603 22 HOH HOH . G 4 HOH A 4 604 68 HOH HOH . G 4 HOH A 5 605 61 HOH HOH . G 4 HOH A 6 606 30 HOH HOH . G 4 HOH A 7 607 6 HOH HOH . G 4 HOH A 8 608 9 HOH HOH . G 4 HOH A 9 609 101 HOH HOH . G 4 HOH A 10 610 106 HOH HOH . G 4 HOH A 11 611 26 HOH HOH . G 4 HOH A 12 612 3 HOH HOH . G 4 HOH A 13 613 121 HOH HOH . G 4 HOH A 14 614 49 HOH HOH . G 4 HOH A 15 615 21 HOH HOH . G 4 HOH A 16 616 70 HOH HOH . G 4 HOH A 17 617 56 HOH HOH . G 4 HOH A 18 618 27 HOH HOH . G 4 HOH A 19 619 127 HOH HOH . G 4 HOH A 20 620 14 HOH HOH . G 4 HOH A 21 621 66 HOH HOH . G 4 HOH A 22 622 103 HOH HOH . G 4 HOH A 23 623 12 HOH HOH . G 4 HOH A 24 624 99 HOH HOH . G 4 HOH A 25 625 20 HOH HOH . G 4 HOH A 26 626 40 HOH HOH . G 4 HOH A 27 627 107 HOH HOH . G 4 HOH A 28 628 24 HOH HOH . G 4 HOH A 29 629 33 HOH HOH . G 4 HOH A 30 630 52 HOH HOH . G 4 HOH A 31 631 81 HOH HOH . G 4 HOH A 32 632 19 HOH HOH . G 4 HOH A 33 633 84 HOH HOH . G 4 HOH A 34 634 60 HOH HOH . G 4 HOH A 35 635 46 HOH HOH . G 4 HOH A 36 636 102 HOH HOH . H 4 HOH B 1 601 33 HOH HOH . H 4 HOH B 2 602 11 HOH HOH . H 4 HOH B 3 603 24 HOH HOH . H 4 HOH B 4 604 37 HOH HOH . H 4 HOH B 5 605 36 HOH HOH . H 4 HOH B 6 606 13 HOH HOH . H 4 HOH B 7 607 18 HOH HOH . H 4 HOH B 8 608 76 HOH HOH . H 4 HOH B 9 609 25 HOH HOH . H 4 HOH B 10 610 65 HOH HOH . H 4 HOH B 11 611 42 HOH HOH . H 4 HOH B 12 612 158 HOH HOH . H 4 HOH B 13 613 47 HOH HOH . H 4 HOH B 14 614 39 HOH HOH . H 4 HOH B 15 615 85 HOH HOH . H 4 HOH B 16 616 72 HOH HOH . H 4 HOH B 17 617 15 HOH HOH . H 4 HOH B 18 618 90 HOH HOH . H 4 HOH B 19 619 54 HOH HOH . H 4 HOH B 20 620 31 HOH HOH . H 4 HOH B 21 621 36 HOH HOH . H 4 HOH B 22 622 68 HOH HOH . H 4 HOH B 23 623 31 HOH HOH . H 4 HOH B 24 624 32 HOH HOH . H 4 HOH B 25 625 1 HOH HOH . H 4 HOH B 26 626 8 HOH HOH . H 4 HOH B 27 627 110 HOH HOH . H 4 HOH B 28 628 64 HOH HOH . H 4 HOH B 29 629 88 HOH HOH . H 4 HOH B 30 630 105 HOH HOH . H 4 HOH B 31 631 91 HOH HOH . H 4 HOH B 32 632 147 HOH HOH . H 4 HOH B 33 633 51 HOH HOH . H 4 HOH B 34 634 72 HOH HOH . H 4 HOH B 35 635 51 HOH HOH . H 4 HOH B 36 636 45 HOH HOH . H 4 HOH B 37 637 98 HOH HOH . H 4 HOH B 38 638 28 HOH HOH . H 4 HOH B 39 639 161 HOH HOH . H 4 HOH B 40 640 85 HOH HOH . H 4 HOH B 41 641 46 HOH HOH . H 4 HOH B 42 642 63 HOH HOH . H 4 HOH B 43 643 4 HOH HOH . H 4 HOH B 44 644 116 HOH HOH . H 4 HOH B 45 645 79 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAI XBU . . . E 2 67.034 9.564 36.799 1 50.57 ? CAI XBU 501 B 1 HETATM 2 C CAJ XBU . . . E 2 66.142 9.975 37.802 1 55.07 ? CAJ XBU 501 B 1 HETATM 3 C CAK XBU . . . E 2 64.997 9.2 38.057 1 57.39 ? CAK XBU 501 B 1 HETATM 4 O OAN XBU . . . E 2 64.125 9.602 39.018 1 55.08 ? OAN XBU 501 B 1 HETATM 5 C CAL XBU . . . E 2 64.753 8.025 37.315 1 51.35 ? CAL XBU 501 B 1 HETATM 6 C CAM XBU . . . E 2 65.641 7.627 36.308 1 45.98 ? CAM XBU 501 B 1 HETATM 7 C CAH XBU . . . E 2 66.793 8.395 36.044 1 50.16 ? CAH XBU 501 B 1 HETATM 8 C CAF XBU . . . E 2 67.726 8.014 35.047 1 51.99 ? CAF XBU 501 B 1 HETATM 9 C CAB XBU . . . E 2 68.632 6.793 35.509 1 51.76 ? CAB XBU 501 B 1 HETATM 10 C CAX XBU . . . E 2 69.462 6.962 36.705 1 49.97 ? CAX XBU 501 B 1 HETATM 11 O OAY XBU . . . E 2 69.81 5.961 37.369 1 45.11 ? OAY XBU 501 B 1 HETATM 12 O OAZ XBU . . . E 2 69.87 8.247 36.995 1 47.13 ? OAZ XBU 501 B 1 HETATM 13 C CBB XBU . . . E 2 70.591 8.358 38.247 1 55.51 ? CBB XBU 501 B 1 HETATM 14 O OAC XBU . . . E 2 67.719 5.685 35.819 1 51.41 ? OAC XBU 501 B 1 HETATM 15 C CAD XBU . . . E 2 68.099 4.691 35.009 1 51 ? CAD XBU 501 B 1 HETATM 16 O OAP XBU . . . E 2 67.598 3.569 35.026 1 51.55 ? OAP XBU 501 B 1 HETATM 17 C CAE XBU . . . E 2 69.11 5.004 34.199 1 49.03 ? CAE XBU 501 B 1 HETATM 18 O OAO XBU . . . E 2 69.579 4.08 33.32 1 41.64 ? OAO XBU 501 B 1 HETATM 19 C CAA XBU . . . E 2 69.446 6.323 34.379 1 50.59 ? CAA XBU 501 B 1 HETATM 20 C CAQ XBU . . . E 2 70.559 6.905 33.766 1 47.89 ? CAQ XBU 501 B 1 HETATM 21 C CAR XBU . . . E 2 71.067 6.356 32.58 1 45.68 ? CAR XBU 501 B 1 HETATM 22 C CAS XBU . . . E 2 72.197 6.836 31.938 1 50.04 ? CAS XBU 501 B 1 HETATM 23 C CAT XBU . . . E 2 72.923 7.883 32.445 1 47.56 ? CAT XBU 501 B 1 HETATM 24 O OAW XBU . . . E 2 74.037 8.26 31.756 1 50.78 ? OAW XBU 501 B 1 HETATM 25 C CAU XBU . . . E 2 72.471 8.484 33.623 1 50.14 ? CAU XBU 501 B 1 HETATM 26 C CAV XBU . . . E 2 71.323 7.992 34.269 1 48.14 ? CAV XBU 501 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 26 #