data_5KD0 # _model_server_result.job_id jVy8QsStHqK1TpxkCu9jPg _model_server_result.datetime_utc '2024-11-24 01:19:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kd0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 5KD0 # _exptl.entry_id 5KD0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.326 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'methyl (2~{R})-3-(4-hydroxyphenyl)-2-[(4-hydroxyphenyl)methyl]-4-oxidanyl-5-oxidanylidene-furan-2-carboxylate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KD0 _cell.length_a 96.69 _cell.length_b 139.24 _cell.length_c 68.8 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KD0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 1 A,B,C,D,E,F,G 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_755 -x+2,-y,z -1 0 0 0 -1 0 0 0 1 193.38 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id O _struct_conn.ptnr1_label_comp_id TRP _struct_conn.ptnr1_label_seq_id 25 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id TRP _struct_conn.ptnr1_auth_seq_id 30 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id CG2 _struct_conn.ptnr2_label_comp_id THR _struct_conn.ptnr2_label_seq_id 29 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id THR _struct_conn.ptnr2_auth_seq_id 34 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.181 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C19 H16 O7' _chem_comp.formula_weight 356.326 _chem_comp.id XBU _chem_comp.mon_nstd_flag . _chem_comp.name 'methyl (2~{R})-3-(4-hydroxyphenyl)-2-[(4-hydroxyphenyl)methyl]-4-oxidanyl-5-oxidanylidene-furan-2-carboxylate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAN CAK XBU sing 414 n n CBB OAZ XBU sing 415 n n CAK CAJ XBU doub 416 n y CAK CAL XBU sing 417 n y CAJ CAI XBU sing 418 n y CAL CAM XBU doub 419 n y OAY CAX XBU doub 420 n n OAZ CAX XBU sing 421 n n CAX CAB XBU sing 422 n n CAI CAH XBU doub 423 n y CAM CAH XBU sing 424 n y CAH CAF XBU sing 425 n n OAC CAB XBU sing 426 n n OAC CAD XBU sing 427 n n CAB CAF XBU sing 428 n n CAB CAA XBU sing 429 n n CAD OAP XBU doub 430 n n CAD CAE XBU sing 431 n n CAA CAE XBU doub 432 n n CAA CAQ XBU sing 433 n n CAV CAU XBU doub 434 n y CAV CAQ XBU sing 435 n y CAE OAO XBU sing 436 n n CAU CAT XBU sing 437 n y CAQ CAR XBU doub 438 n y CAT OAW XBU sing 439 n n CAT CAS XBU doub 440 n y CAR CAS XBU sing 441 n y CAI H1 XBU sing 442 n n CAJ H2 XBU sing 443 n n OAN H3 XBU sing 444 n n CAL H4 XBU sing 445 n n CAM H5 XBU sing 446 n n CAF H6 XBU sing 447 n n CAF H7 XBU sing 448 n n CBB H8 XBU sing 449 n n CBB H9 XBU sing 450 n n CBB H10 XBU sing 451 n n OAO H11 XBU sing 452 n n CAR H12 XBU sing 453 n n CAS H13 XBU sing 454 n n OAW H14 XBU sing 455 n n CAU H15 XBU sing 456 n n CAV H16 XBU sing 457 n n # _atom_sites.entry_id 5KD0 _atom_sites.fract_transf_matrix[1][1] 0.010342 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007182 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014535 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 XBU A 1 501 2 XBU DBU . D 3 GST A 1 502 1 GST GPP . E 3 GST B 1 501 1 GST GPP . F 4 HOH A 1 601 33 HOH HOH . F 4 HOH A 2 602 32 HOH HOH . F 4 HOH A 3 603 17 HOH HOH . F 4 HOH A 4 604 3 HOH HOH . G 4 HOH B 1 601 29 HOH HOH . G 4 HOH B 2 602 18 HOH HOH . G 4 HOH B 3 603 9 HOH HOH . G 4 HOH B 4 604 13 HOH HOH . G 4 HOH B 5 605 16 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAI XBU . . . C 2 97.116 24.422 63.068 1 80.23 ? CAI XBU 501 A 1 HETATM 2 C CAJ XBU . . . C 2 96.681 23.612 64.139 1 76.8 ? CAJ XBU 501 A 1 HETATM 3 C CAK XBU . . . C 2 97.574 22.704 64.73 1 73.05 ? CAK XBU 501 A 1 HETATM 4 O OAN XBU . . . C 2 97.199 21.904 65.753 1 67.7 ? OAN XBU 501 A 1 HETATM 5 C CAL XBU . . . C 2 98.879 22.61 64.263 1 72.32 ? CAL XBU 501 A 1 HETATM 6 C CAM XBU . . . C 2 99.303 23.416 63.203 1 75.08 ? CAM XBU 501 A 1 HETATM 7 C CAH XBU . . . C 2 98.442 24.339 62.599 1 78.91 ? CAH XBU 501 A 1 HETATM 8 C CAF XBU . . . C 2 98.896 25.128 61.547 1 81.77 ? CAF XBU 501 A 1 HETATM 9 C CAB XBU . . . C 2 99.866 26.269 62.06 1 84.22 ? CAB XBU 501 A 1 HETATM 10 C CAX XBU . . . C 2 99.181 27.316 62.716 1 79.99 ? CAX XBU 501 A 1 HETATM 11 O OAY XBU . . . C 2 97.954 27.378 62.653 1 77.71 ? OAY XBU 501 A 1 HETATM 12 O OAZ XBU . . . C 2 99.982 28.17 63.443 1 72.48 ? OAZ XBU 501 A 1 HETATM 13 C CBB XBU . . . C 2 99.452 29.411 63.892 1 69.52 ? CBB XBU 501 A 1 HETATM 14 O OAC XBU . . . C 2 100.807 25.615 62.955 1 86.65 ? OAC XBU 501 A 1 HETATM 15 C CAD XBU . . . C 2 102.02 25.634 62.324 1 78.93 ? CAD XBU 501 A 1 HETATM 16 O OAP XBU . . . C 2 103.062 25.119 62.74 1 68.97 ? OAP XBU 501 A 1 HETATM 17 C CAE XBU . . . C 2 102.003 26.305 61.194 1 77.61 ? CAE XBU 501 A 1 HETATM 18 O OAO XBU . . . C 2 103.105 26.5 60.425 1 70.73 ? OAO XBU 501 A 1 HETATM 19 C CAA XBU . . . C 2 100.732 26.718 60.997 1 83.4 ? CAA XBU 501 A 1 HETATM 20 C CAQ XBU . . . C 2 100.416 27.527 59.974 1 81.72 ? CAQ XBU 501 A 1 HETATM 21 C CAR XBU . . . C 2 99.279 27.432 59.177 1 80.95 ? CAR XBU 501 A 1 HETATM 22 C CAS XBU . . . C 2 99.108 28.373 58.161 1 85.33 ? CAS XBU 501 A 1 HETATM 23 C CAT XBU . . . C 2 100.032 29.405 57.949 1 86.65 ? CAT XBU 501 A 1 HETATM 24 O OAW XBU . . . C 2 99.886 30.345 56.977 1 86.52 ? OAW XBU 501 A 1 HETATM 25 C CAU XBU . . . C 2 101.147 29.493 58.741 1 84.11 ? CAU XBU 501 A 1 HETATM 26 C CAV XBU . . . C 2 101.318 28.562 59.737 1 84.3 ? CAV XBU 501 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 26 #