data_5KD9
#
_model_server_result.job_id            npfJrocR-IQ62RxBMg5JcA 
_model_server_result.datetime_utc      '2025-01-21 04:50:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5kd9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":601}' 
#
_entry.id    5KD9 
#
_exptl.entry_id    5KD9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              551.962 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (1S,2R,4S)-N-(4-chlorophenyl)-5,6-bis(4-hydroxyphenyl)-N-(2,2,2-trifluoroethyl)-7-oxabicyclo[2.2.1]hept-5-ene-2-sulfonamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          110.97 
_cell.angle_gamma         90 
_cell.entry_id            5KD9 
_cell.length_a            54.951 
_cell.length_b            81.654 
_cell.length_c            58.795 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5KD9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
#
_chem_comp.formula           'C26 H21 Cl F3 N O5 S' 
_chem_comp.formula_weight    551.962 
_chem_comp.id                OBT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (1S,2R,4S)-N-(4-chlorophenyl)-5,6-bis(4-hydroxyphenyl)-N-(2,2,2-trifluoroethyl)-7-oxabicyclo[2.2.1]hept-5-ene-2-sulfonamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O04 S01 OBT doub 237 n n 
O05 S01 OBT doub 238 n n 
S01 N01 OBT sing 239 n n 
S01 C17 OBT sing 240 n n 
C17 C18 OBT sing 241 n n 
C17 C11 OBT sing 242 n n 
C18 C09 OBT sing 243 n n 
C11 O03 OBT sing 244 n n 
C11 C07 OBT sing 245 n n 
O03 C09 OBT sing 246 n n 
C09 C08 OBT sing 247 n n 
C07 C05 OBT sing 248 n n 
C07 C08 OBT doub 249 n n 
C05 C04 OBT doub 250 n y 
C05 C06 OBT sing 251 n y 
C04 C03 OBT sing 252 n y 
C06 C01 OBT doub 253 n y 
C03 C02 OBT doub 254 n y 
C01 C02 OBT sing 255 n y 
C02 O01 OBT sing 256 n n 
C08 C10 OBT sing 257 n n 
C10 C16 OBT doub 258 n y 
C10 C12 OBT sing 259 n y 
C16 C15 OBT sing 260 n y 
C12 C13 OBT doub 261 n y 
C15 C14 OBT doub 262 n y 
C13 C14 OBT sing 263 n y 
C14 O02 OBT sing 264 n n 
C01 H1 OBT sing 265 n n 
C03 H2 OBT sing 266 n n 
C04 H3 OBT sing 267 n n 
C06 H4 OBT sing 268 n n 
O01 H5 OBT sing 269 n n 
C09 H6 OBT sing 270 n n 
C11 H7 OBT sing 271 n n 
C12 H8 OBT sing 272 n n 
C13 H9 OBT sing 273 n n 
C15 H10 OBT sing 274 n n 
C16 H11 OBT sing 275 n n 
O02 H12 OBT sing 276 n n 
C17 H13 OBT sing 277 n n 
C18 H14 OBT sing 278 n n 
C18 H15 OBT sing 279 n n 
N01 C19 OBT sing 280 n n 
C19 C20 OBT sing 281 n n 
C20 F1 OBT sing 282 n n 
C20 F2 OBT sing 283 n n 
C20 F3 OBT sing 284 n n 
N01 C21 OBT sing 285 n n 
C21 C22 OBT sing 286 n y 
C22 C23 OBT doub 287 n y 
C23 C24 OBT sing 288 n y 
C24 C25 OBT doub 289 n y 
C25 C26 OBT sing 290 n y 
C26 C21 OBT doub 291 n y 
C19 H16 OBT sing 292 n n 
C19 H17 OBT sing 293 n n 
C22 H18 OBT sing 294 n n 
C23 H19 OBT sing 295 n n 
C25 H21 OBT sing 296 n n 
C26 H22 OBT sing 297 n n 
C24 CL1 OBT sing 298 n n 
#
_atom_sites.entry_id                     5KD9 
_atom_sites.fract_transf_matrix[1][1]    0.018198 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006975 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012247 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018215 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 OBT A 1 601 1 OBT OBT . 
F 3 OBT B 1 601 1 OBT OBT . 
G 4 HOH A 1 701 169 HOH HOH . 
G 4 HOH A 2 702 155 HOH HOH . 
G 4 HOH A 3 703 36 HOH HOH . 
G 4 HOH A 4 704 174 HOH HOH . 
G 4 HOH A 5 705 35 HOH HOH . 
G 4 HOH A 6 706 173 HOH HOH . 
G 4 HOH A 7 707 73 HOH HOH . 
G 4 HOH A 8 708 181 HOH HOH . 
G 4 HOH A 9 709 94 HOH HOH . 
G 4 HOH A 10 710 144 HOH HOH . 
G 4 HOH A 11 711 25 HOH HOH . 
G 4 HOH A 12 712 66 HOH HOH . 
G 4 HOH A 13 713 90 HOH HOH . 
G 4 HOH A 14 714 74 HOH HOH . 
G 4 HOH A 15 715 31 HOH HOH . 
G 4 HOH A 16 716 37 HOH HOH . 
G 4 HOH A 17 717 11 HOH HOH . 
G 4 HOH A 18 718 27 HOH HOH . 
G 4 HOH A 19 719 5 HOH HOH . 
G 4 HOH A 20 720 43 HOH HOH . 
G 4 HOH A 21 721 160 HOH HOH . 
G 4 HOH A 22 722 116 HOH HOH . 
G 4 HOH A 23 723 7 HOH HOH . 
G 4 HOH A 24 724 3 HOH HOH . 
G 4 HOH A 25 725 110 HOH HOH . 
G 4 HOH A 26 726 45 HOH HOH . 
G 4 HOH A 27 727 76 HOH HOH . 
G 4 HOH A 28 728 69 HOH HOH . 
G 4 HOH A 29 729 111 HOH HOH . 
G 4 HOH A 30 730 72 HOH HOH . 
G 4 HOH A 31 731 16 HOH HOH . 
G 4 HOH A 32 732 17 HOH HOH . 
G 4 HOH A 33 733 80 HOH HOH . 
G 4 HOH A 34 734 79 HOH HOH . 
G 4 HOH A 35 735 163 HOH HOH . 
G 4 HOH A 36 736 149 HOH HOH . 
G 4 HOH A 37 737 88 HOH HOH . 
G 4 HOH A 38 738 20 HOH HOH . 
G 4 HOH A 39 739 62 HOH HOH . 
G 4 HOH A 40 740 63 HOH HOH . 
G 4 HOH A 41 741 130 HOH HOH . 
G 4 HOH A 42 742 8 HOH HOH . 
G 4 HOH A 43 743 136 HOH HOH . 
G 4 HOH A 44 744 24 HOH HOH . 
G 4 HOH A 45 745 109 HOH HOH . 
G 4 HOH A 46 746 115 HOH HOH . 
G 4 HOH A 47 747 28 HOH HOH . 
G 4 HOH A 48 748 50 HOH HOH . 
G 4 HOH A 49 749 105 HOH HOH . 
G 4 HOH A 50 750 32 HOH HOH . 
G 4 HOH A 51 751 171 HOH HOH . 
G 4 HOH A 52 752 81 HOH HOH . 
G 4 HOH A 53 753 126 HOH HOH . 
G 4 HOH A 54 754 58 HOH HOH . 
G 4 HOH A 55 755 114 HOH HOH . 
G 4 HOH A 56 756 180 HOH HOH . 
G 4 HOH A 57 757 166 HOH HOH . 
G 4 HOH A 58 758 41 HOH HOH . 
G 4 HOH A 59 759 15 HOH HOH . 
G 4 HOH A 60 760 157 HOH HOH . 
G 4 HOH A 61 761 89 HOH HOH . 
G 4 HOH A 62 762 61 HOH HOH . 
G 4 HOH A 63 763 165 HOH HOH . 
G 4 HOH A 64 764 147 HOH HOH . 
G 4 HOH A 65 765 22 HOH HOH . 
G 4 HOH A 66 766 53 HOH HOH . 
G 4 HOH A 67 767 176 HOH HOH . 
G 4 HOH A 68 768 95 HOH HOH . 
G 4 HOH A 69 769 18 HOH HOH . 
G 4 HOH A 70 770 44 HOH HOH . 
G 4 HOH A 71 771 83 HOH HOH . 
G 4 HOH A 72 772 139 HOH HOH . 
G 4 HOH A 73 773 92 HOH HOH . 
G 4 HOH A 74 774 104 HOH HOH . 
G 4 HOH A 75 775 113 HOH HOH . 
G 4 HOH A 76 776 51 HOH HOH . 
G 4 HOH A 77 777 107 HOH HOH . 
G 4 HOH A 78 778 56 HOH HOH . 
G 4 HOH A 79 779 179 HOH HOH . 
G 4 HOH A 80 780 186 HOH HOH . 
G 4 HOH A 81 781 183 HOH HOH . 
G 4 HOH A 82 782 117 HOH HOH . 
G 4 HOH A 83 783 98 HOH HOH . 
G 4 HOH A 84 784 77 HOH HOH . 
G 4 HOH A 85 785 167 HOH HOH . 
G 4 HOH A 86 786 185 HOH HOH . 
G 4 HOH A 87 787 4 HOH HOH . 
G 4 HOH A 88 788 125 HOH HOH . 
H 4 HOH B 1 701 133 HOH HOH . 
H 4 HOH B 2 702 141 HOH HOH . 
H 4 HOH B 3 703 146 HOH HOH . 
H 4 HOH B 4 704 184 HOH HOH . 
H 4 HOH B 5 705 64 HOH HOH . 
H 4 HOH B 6 706 54 HOH HOH . 
H 4 HOH B 7 707 40 HOH HOH . 
H 4 HOH B 8 708 158 HOH HOH . 
H 4 HOH B 9 709 152 HOH HOH . 
H 4 HOH B 10 710 101 HOH HOH . 
H 4 HOH B 11 711 71 HOH HOH . 
H 4 HOH B 12 712 140 HOH HOH . 
H 4 HOH B 13 713 87 HOH HOH . 
H 4 HOH B 14 714 151 HOH HOH . 
H 4 HOH B 15 715 34 HOH HOH . 
H 4 HOH B 16 716 46 HOH HOH . 
H 4 HOH B 17 717 38 HOH HOH . 
H 4 HOH B 18 718 23 HOH HOH . 
H 4 HOH B 19 719 9 HOH HOH . 
H 4 HOH B 20 720 10 HOH HOH . 
H 4 HOH B 21 721 59 HOH HOH . 
H 4 HOH B 22 722 97 HOH HOH . 
H 4 HOH B 23 723 26 HOH HOH . 
H 4 HOH B 24 724 119 HOH HOH . 
H 4 HOH B 25 725 145 HOH HOH . 
H 4 HOH B 26 726 48 HOH HOH . 
H 4 HOH B 27 727 47 HOH HOH . 
H 4 HOH B 28 728 6 HOH HOH . 
H 4 HOH B 29 729 123 HOH HOH . 
H 4 HOH B 30 730 55 HOH HOH . 
H 4 HOH B 31 731 13 HOH HOH . 
H 4 HOH B 32 732 33 HOH HOH . 
H 4 HOH B 33 733 39 HOH HOH . 
H 4 HOH B 34 734 118 HOH HOH . 
H 4 HOH B 35 735 164 HOH HOH . 
H 4 HOH B 36 736 96 HOH HOH . 
H 4 HOH B 37 737 170 HOH HOH . 
H 4 HOH B 38 738 52 HOH HOH . 
H 4 HOH B 39 739 67 HOH HOH . 
H 4 HOH B 40 740 161 HOH HOH . 
H 4 HOH B 41 741 75 HOH HOH . 
H 4 HOH B 42 742 178 HOH HOH . 
H 4 HOH B 43 743 14 HOH HOH . 
H 4 HOH B 44 744 106 HOH HOH . 
H 4 HOH B 45 745 1 HOH HOH . 
H 4 HOH B 46 746 177 HOH HOH . 
H 4 HOH B 47 747 108 HOH HOH . 
H 4 HOH B 48 748 57 HOH HOH . 
H 4 HOH B 49 749 102 HOH HOH . 
H 4 HOH B 50 750 21 HOH HOH . 
H 4 HOH B 51 751 42 HOH HOH . 
H 4 HOH B 52 752 78 HOH HOH . 
H 4 HOH B 53 753 112 HOH HOH . 
H 4 HOH B 54 754 60 HOH HOH . 
H 4 HOH B 55 755 100 HOH HOH . 
H 4 HOH B 56 756 137 HOH HOH . 
H 4 HOH B 57 757 29 HOH HOH . 
H 4 HOH B 58 758 172 HOH HOH . 
H 4 HOH B 59 759 120 HOH HOH . 
H 4 HOH B 60 760 12 HOH HOH . 
H 4 HOH B 61 761 91 HOH HOH . 
H 4 HOH B 62 762 148 HOH HOH . 
H 4 HOH B 63 763 19 HOH HOH . 
H 4 HOH B 64 764 134 HOH HOH . 
H 4 HOH B 65 765 103 HOH HOH . 
H 4 HOH B 66 766 49 HOH HOH . 
H 4 HOH B 67 767 65 HOH HOH . 
H 4 HOH B 68 768 153 HOH HOH . 
H 4 HOH B 69 769 99 HOH HOH . 
H 4 HOH B 70 770 122 HOH HOH . 
H 4 HOH B 71 771 82 HOH HOH . 
H 4 HOH B 72 772 132 HOH HOH . 
H 4 HOH B 73 773 131 HOH HOH . 
H 4 HOH B 74 774 68 HOH HOH . 
H 4 HOH B 75 775 150 HOH HOH . 
H 4 HOH B 76 776 138 HOH HOH . 
H 4 HOH B 77 777 30 HOH HOH . 
H 4 HOH B 78 778 168 HOH HOH . 
H 4 HOH B 79 779 70 HOH HOH . 
H 4 HOH B 80 780 124 HOH HOH . 
H 4 HOH B 81 781 93 HOH HOH . 
H 4 HOH B 82 782 128 HOH HOH . 
H 4 HOH B 83 783 182 HOH HOH . 
H 4 HOH B 84 784 143 HOH HOH . 
H 4 HOH B 85 785 162 HOH HOH . 
H 4 HOH B 86 786 129 HOH HOH . 
H 4 HOH B 87 787 2 HOH HOH . 
H 4 HOH B 88 788 156 HOH HOH . 
I 4 HOH C 1 701 127 HOH HOH . 
J 4 HOH D 1 701 159 HOH HOH . 
J 4 HOH D 2 702 175 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 OBT . . . E 3 -22.297 -24.21 -4.977 0.93 39.03 ? C01 OBT 601 A 1 
HETATM 2 C C02 OBT . . . E 3 -23.403 -24.919 -4.939 0.93 39.85 ? C02 OBT 601 A 1 
HETATM 3 C C03 OBT . . . E 3 -23.302 -26.225 -4.997 0.93 39.69 ? C03 OBT 601 A 1 
HETATM 4 C C04 OBT . . . E 3 -22.114 -26.782 -5.086 0.93 39.88 ? C04 OBT 601 A 1 
HETATM 5 C C05 OBT . . . E 3 -20.98 -26.094 -5.113 0.93 40.58 ? C05 OBT 601 A 1 
HETATM 6 C C06 OBT . . . E 3 -21.112 -24.777 -5.066 0.93 38.78 ? C06 OBT 601 A 1 
HETATM 7 O O01 OBT . . . E 3 -24.584 -24.346 -4.849 0.93 41.96 ? O01 OBT 601 A 1 
HETATM 8 C C07 OBT . . . E 3 -19.824 -26.735 -5.253 0.93 41.08 ? C07 OBT 601 A 1 
HETATM 9 C C08 OBT . . . E 3 -18.613 -26.747 -4.671 0.93 41.56 ? C08 OBT 601 A 1 
HETATM 10 C C09 OBT . . . E 3 -17.864 -27.784 -5.496 0.93 42.19 ? C09 OBT 601 A 1 
HETATM 11 C C10 OBT . . . E 3 -18.085 -26.124 -3.596 0.93 36.09 ? C10 OBT 601 A 1 
HETATM 12 C C11 OBT . . . E 3 -19.703 -27.762 -6.373 0.93 43.4 ? C11 OBT 601 A 1 
HETATM 13 C C12 OBT . . . E 3 -18.859 -25.76 -2.569 0.93 35.97 ? C12 OBT 601 A 1 
HETATM 14 C C13 OBT . . . E 3 -18.371 -25.172 -1.477 0.93 32.58 ? C13 OBT 601 A 1 
HETATM 15 C C14 OBT . . . E 3 -17.078 -24.941 -1.334 0.93 33.56 ? C14 OBT 601 A 1 
HETATM 16 C C15 OBT . . . E 3 -16.291 -25.309 -2.345 0.93 30.18 ? C15 OBT 601 A 1 
HETATM 17 C C16 OBT . . . E 3 -16.78 -25.886 -3.43 0.93 30.19 ? C16 OBT 601 A 1 
HETATM 18 O O02 OBT . . . E 3 -16.591 -24.366 -0.245 0.93 31.06 ? O02 OBT 601 A 1 
HETATM 19 C C17 OBT . . . E 3 -18.896 -27.311 -7.55 0.93 39.19 ? C17 OBT 601 A 1 
HETATM 20 C C18 OBT . . . E 3 -17.529 -27.217 -6.857 0.93 38.77 ? C18 OBT 601 A 1 
HETATM 21 S S01 OBT . . . E 3 -18.993 -28.587 -8.892 0.93 65.38 ? S01 OBT 601 A 1 
HETATM 22 O O03 OBT . . . E 3 -18.82 -28.689 -5.909 0.93 44.56 ? O03 OBT 601 A 1 
HETATM 23 N N01 OBT . . . E 3 -18.218 -29.965 -8.379 0.93 48.4 ? N01 OBT 601 A 1 
HETATM 24 O O04 OBT . . . E 3 -18.314 -27.69 -9.731 0.93 69.16 ? O04 OBT 601 A 1 
HETATM 25 O O05 OBT . . . E 3 -20.39 -28.629 -9.079 0.93 64.16 ? O05 OBT 601 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           310 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           25 
#