data_5KD9 # _model_server_result.job_id rbSvhATkauRa6llBMfq3KQ _model_server_result.datetime_utc '2025-01-21 04:49:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kd9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":601}' # _entry.id 5KD9 # _exptl.entry_id 5KD9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 551.962 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1S,2R,4S)-N-(4-chlorophenyl)-5,6-bis(4-hydroxyphenyl)-N-(2,2,2-trifluoroethyl)-7-oxabicyclo[2.2.1]hept-5-ene-2-sulfonamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.97 _cell.angle_gamma 90 _cell.entry_id 5KD9 _cell.length_a 54.951 _cell.length_b 81.654 _cell.length_c 58.795 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KD9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C26 H21 Cl F3 N O5 S' _chem_comp.formula_weight 551.962 _chem_comp.id OBT _chem_comp.mon_nstd_flag . _chem_comp.name (1S,2R,4S)-N-(4-chlorophenyl)-5,6-bis(4-hydroxyphenyl)-N-(2,2,2-trifluoroethyl)-7-oxabicyclo[2.2.1]hept-5-ene-2-sulfonamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O04 S01 OBT doub 237 n n O05 S01 OBT doub 238 n n S01 N01 OBT sing 239 n n S01 C17 OBT sing 240 n n C17 C18 OBT sing 241 n n C17 C11 OBT sing 242 n n C18 C09 OBT sing 243 n n C11 O03 OBT sing 244 n n C11 C07 OBT sing 245 n n O03 C09 OBT sing 246 n n C09 C08 OBT sing 247 n n C07 C05 OBT sing 248 n n C07 C08 OBT doub 249 n n C05 C04 OBT doub 250 n y C05 C06 OBT sing 251 n y C04 C03 OBT sing 252 n y C06 C01 OBT doub 253 n y C03 C02 OBT doub 254 n y C01 C02 OBT sing 255 n y C02 O01 OBT sing 256 n n C08 C10 OBT sing 257 n n C10 C16 OBT doub 258 n y C10 C12 OBT sing 259 n y C16 C15 OBT sing 260 n y C12 C13 OBT doub 261 n y C15 C14 OBT doub 262 n y C13 C14 OBT sing 263 n y C14 O02 OBT sing 264 n n C01 H1 OBT sing 265 n n C03 H2 OBT sing 266 n n C04 H3 OBT sing 267 n n C06 H4 OBT sing 268 n n O01 H5 OBT sing 269 n n C09 H6 OBT sing 270 n n C11 H7 OBT sing 271 n n C12 H8 OBT sing 272 n n C13 H9 OBT sing 273 n n C15 H10 OBT sing 274 n n C16 H11 OBT sing 275 n n O02 H12 OBT sing 276 n n C17 H13 OBT sing 277 n n C18 H14 OBT sing 278 n n C18 H15 OBT sing 279 n n N01 C19 OBT sing 280 n n C19 C20 OBT sing 281 n n C20 F1 OBT sing 282 n n C20 F2 OBT sing 283 n n C20 F3 OBT sing 284 n n N01 C21 OBT sing 285 n n C21 C22 OBT sing 286 n y C22 C23 OBT doub 287 n y C23 C24 OBT sing 288 n y C24 C25 OBT doub 289 n y C25 C26 OBT sing 290 n y C26 C21 OBT doub 291 n y C19 H16 OBT sing 292 n n C19 H17 OBT sing 293 n n C22 H18 OBT sing 294 n n C23 H19 OBT sing 295 n n C25 H21 OBT sing 296 n n C26 H22 OBT sing 297 n n C24 CL1 OBT sing 298 n n # _atom_sites.entry_id 5KD9 _atom_sites.fract_transf_matrix[1][1] 0.018198 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006975 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012247 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018215 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 OBT A 1 601 1 OBT OBT . F 3 OBT B 1 601 1 OBT OBT . G 4 HOH A 1 701 169 HOH HOH . G 4 HOH A 2 702 155 HOH HOH . G 4 HOH A 3 703 36 HOH HOH . G 4 HOH A 4 704 174 HOH HOH . G 4 HOH A 5 705 35 HOH HOH . G 4 HOH A 6 706 173 HOH HOH . G 4 HOH A 7 707 73 HOH HOH . G 4 HOH A 8 708 181 HOH HOH . G 4 HOH A 9 709 94 HOH HOH . G 4 HOH A 10 710 144 HOH HOH . G 4 HOH A 11 711 25 HOH HOH . G 4 HOH A 12 712 66 HOH HOH . G 4 HOH A 13 713 90 HOH HOH . G 4 HOH A 14 714 74 HOH HOH . G 4 HOH A 15 715 31 HOH HOH . G 4 HOH A 16 716 37 HOH HOH . G 4 HOH A 17 717 11 HOH HOH . G 4 HOH A 18 718 27 HOH HOH . G 4 HOH A 19 719 5 HOH HOH . G 4 HOH A 20 720 43 HOH HOH . G 4 HOH A 21 721 160 HOH HOH . G 4 HOH A 22 722 116 HOH HOH . G 4 HOH A 23 723 7 HOH HOH . G 4 HOH A 24 724 3 HOH HOH . G 4 HOH A 25 725 110 HOH HOH . G 4 HOH A 26 726 45 HOH HOH . G 4 HOH A 27 727 76 HOH HOH . G 4 HOH A 28 728 69 HOH HOH . G 4 HOH A 29 729 111 HOH HOH . G 4 HOH A 30 730 72 HOH HOH . G 4 HOH A 31 731 16 HOH HOH . G 4 HOH A 32 732 17 HOH HOH . G 4 HOH A 33 733 80 HOH HOH . G 4 HOH A 34 734 79 HOH HOH . G 4 HOH A 35 735 163 HOH HOH . G 4 HOH A 36 736 149 HOH HOH . G 4 HOH A 37 737 88 HOH HOH . G 4 HOH A 38 738 20 HOH HOH . G 4 HOH A 39 739 62 HOH HOH . G 4 HOH A 40 740 63 HOH HOH . G 4 HOH A 41 741 130 HOH HOH . G 4 HOH A 42 742 8 HOH HOH . G 4 HOH A 43 743 136 HOH HOH . G 4 HOH A 44 744 24 HOH HOH . G 4 HOH A 45 745 109 HOH HOH . G 4 HOH A 46 746 115 HOH HOH . G 4 HOH A 47 747 28 HOH HOH . G 4 HOH A 48 748 50 HOH HOH . G 4 HOH A 49 749 105 HOH HOH . G 4 HOH A 50 750 32 HOH HOH . G 4 HOH A 51 751 171 HOH HOH . G 4 HOH A 52 752 81 HOH HOH . G 4 HOH A 53 753 126 HOH HOH . G 4 HOH A 54 754 58 HOH HOH . G 4 HOH A 55 755 114 HOH HOH . G 4 HOH A 56 756 180 HOH HOH . G 4 HOH A 57 757 166 HOH HOH . G 4 HOH A 58 758 41 HOH HOH . G 4 HOH A 59 759 15 HOH HOH . G 4 HOH A 60 760 157 HOH HOH . G 4 HOH A 61 761 89 HOH HOH . G 4 HOH A 62 762 61 HOH HOH . G 4 HOH A 63 763 165 HOH HOH . G 4 HOH A 64 764 147 HOH HOH . G 4 HOH A 65 765 22 HOH HOH . G 4 HOH A 66 766 53 HOH HOH . G 4 HOH A 67 767 176 HOH HOH . G 4 HOH A 68 768 95 HOH HOH . G 4 HOH A 69 769 18 HOH HOH . G 4 HOH A 70 770 44 HOH HOH . G 4 HOH A 71 771 83 HOH HOH . G 4 HOH A 72 772 139 HOH HOH . G 4 HOH A 73 773 92 HOH HOH . G 4 HOH A 74 774 104 HOH HOH . G 4 HOH A 75 775 113 HOH HOH . G 4 HOH A 76 776 51 HOH HOH . G 4 HOH A 77 777 107 HOH HOH . G 4 HOH A 78 778 56 HOH HOH . G 4 HOH A 79 779 179 HOH HOH . G 4 HOH A 80 780 186 HOH HOH . G 4 HOH A 81 781 183 HOH HOH . G 4 HOH A 82 782 117 HOH HOH . G 4 HOH A 83 783 98 HOH HOH . G 4 HOH A 84 784 77 HOH HOH . G 4 HOH A 85 785 167 HOH HOH . G 4 HOH A 86 786 185 HOH HOH . G 4 HOH A 87 787 4 HOH HOH . G 4 HOH A 88 788 125 HOH HOH . H 4 HOH B 1 701 133 HOH HOH . H 4 HOH B 2 702 141 HOH HOH . H 4 HOH B 3 703 146 HOH HOH . H 4 HOH B 4 704 184 HOH HOH . H 4 HOH B 5 705 64 HOH HOH . H 4 HOH B 6 706 54 HOH HOH . H 4 HOH B 7 707 40 HOH HOH . H 4 HOH B 8 708 158 HOH HOH . H 4 HOH B 9 709 152 HOH HOH . H 4 HOH B 10 710 101 HOH HOH . H 4 HOH B 11 711 71 HOH HOH . H 4 HOH B 12 712 140 HOH HOH . H 4 HOH B 13 713 87 HOH HOH . H 4 HOH B 14 714 151 HOH HOH . H 4 HOH B 15 715 34 HOH HOH . H 4 HOH B 16 716 46 HOH HOH . H 4 HOH B 17 717 38 HOH HOH . H 4 HOH B 18 718 23 HOH HOH . H 4 HOH B 19 719 9 HOH HOH . H 4 HOH B 20 720 10 HOH HOH . H 4 HOH B 21 721 59 HOH HOH . H 4 HOH B 22 722 97 HOH HOH . H 4 HOH B 23 723 26 HOH HOH . H 4 HOH B 24 724 119 HOH HOH . H 4 HOH B 25 725 145 HOH HOH . H 4 HOH B 26 726 48 HOH HOH . H 4 HOH B 27 727 47 HOH HOH . H 4 HOH B 28 728 6 HOH HOH . H 4 HOH B 29 729 123 HOH HOH . H 4 HOH B 30 730 55 HOH HOH . H 4 HOH B 31 731 13 HOH HOH . H 4 HOH B 32 732 33 HOH HOH . H 4 HOH B 33 733 39 HOH HOH . H 4 HOH B 34 734 118 HOH HOH . H 4 HOH B 35 735 164 HOH HOH . H 4 HOH B 36 736 96 HOH HOH . H 4 HOH B 37 737 170 HOH HOH . H 4 HOH B 38 738 52 HOH HOH . H 4 HOH B 39 739 67 HOH HOH . H 4 HOH B 40 740 161 HOH HOH . H 4 HOH B 41 741 75 HOH HOH . H 4 HOH B 42 742 178 HOH HOH . H 4 HOH B 43 743 14 HOH HOH . H 4 HOH B 44 744 106 HOH HOH . H 4 HOH B 45 745 1 HOH HOH . H 4 HOH B 46 746 177 HOH HOH . H 4 HOH B 47 747 108 HOH HOH . H 4 HOH B 48 748 57 HOH HOH . H 4 HOH B 49 749 102 HOH HOH . H 4 HOH B 50 750 21 HOH HOH . H 4 HOH B 51 751 42 HOH HOH . H 4 HOH B 52 752 78 HOH HOH . H 4 HOH B 53 753 112 HOH HOH . H 4 HOH B 54 754 60 HOH HOH . H 4 HOH B 55 755 100 HOH HOH . H 4 HOH B 56 756 137 HOH HOH . H 4 HOH B 57 757 29 HOH HOH . H 4 HOH B 58 758 172 HOH HOH . H 4 HOH B 59 759 120 HOH HOH . H 4 HOH B 60 760 12 HOH HOH . H 4 HOH B 61 761 91 HOH HOH . H 4 HOH B 62 762 148 HOH HOH . H 4 HOH B 63 763 19 HOH HOH . H 4 HOH B 64 764 134 HOH HOH . H 4 HOH B 65 765 103 HOH HOH . H 4 HOH B 66 766 49 HOH HOH . H 4 HOH B 67 767 65 HOH HOH . H 4 HOH B 68 768 153 HOH HOH . H 4 HOH B 69 769 99 HOH HOH . H 4 HOH B 70 770 122 HOH HOH . H 4 HOH B 71 771 82 HOH HOH . H 4 HOH B 72 772 132 HOH HOH . H 4 HOH B 73 773 131 HOH HOH . H 4 HOH B 74 774 68 HOH HOH . H 4 HOH B 75 775 150 HOH HOH . H 4 HOH B 76 776 138 HOH HOH . H 4 HOH B 77 777 30 HOH HOH . H 4 HOH B 78 778 168 HOH HOH . H 4 HOH B 79 779 70 HOH HOH . H 4 HOH B 80 780 124 HOH HOH . H 4 HOH B 81 781 93 HOH HOH . H 4 HOH B 82 782 128 HOH HOH . H 4 HOH B 83 783 182 HOH HOH . H 4 HOH B 84 784 143 HOH HOH . H 4 HOH B 85 785 162 HOH HOH . H 4 HOH B 86 786 129 HOH HOH . H 4 HOH B 87 787 2 HOH HOH . H 4 HOH B 88 788 156 HOH HOH . I 4 HOH C 1 701 127 HOH HOH . J 4 HOH D 1 701 159 HOH HOH . J 4 HOH D 2 702 175 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 OBT . . . F 3 -12.018 -21.572 -34.684 1 32.66 ? C01 OBT 601 B 1 HETATM 2 C C02 OBT . . . F 3 -13.007 -21.694 -35.554 1 35.28 ? C02 OBT 601 B 1 HETATM 3 C C03 OBT . . . F 3 -13.743 -20.619 -35.731 1 34.94 ? C03 OBT 601 B 1 HETATM 4 C C04 OBT . . . F 3 -13.496 -19.481 -35.1 1 34.34 ? C04 OBT 601 B 1 HETATM 5 C C05 OBT . . . F 3 -12.49 -19.326 -34.244 1 32.72 ? C05 OBT 601 B 1 HETATM 6 C C06 OBT . . . F 3 -11.785 -20.435 -34.053 1 32.24 ? C06 OBT 601 B 1 HETATM 7 O O01 OBT . . . F 3 -13.258 -22.838 -36.197 1 35.58 ? O01 OBT 601 B 1 HETATM 8 C C07 OBT . . . F 3 -12.252 -18.198 -33.547 1 32.89 ? C07 OBT 601 B 1 HETATM 9 C C08 OBT . . . F 3 -11.194 -17.41 -33.288 1 29.96 ? C08 OBT 601 B 1 HETATM 10 C C09 OBT . . . F 3 -11.759 -16.395 -32.314 1 33.79 ? C09 OBT 601 B 1 HETATM 11 C C10 OBT . . . F 3 -9.91 -17.431 -33.68 1 33.26 ? C10 OBT 601 B 1 HETATM 12 C C11 OBT . . . F 3 -13.363 -17.58 -32.721 1 35.55 ? C11 OBT 601 B 1 HETATM 13 C C12 OBT . . . F 3 -9.516 -17.927 -34.856 1 34.36 ? C12 OBT 601 B 1 HETATM 14 C C13 OBT . . . F 3 -8.248 -17.955 -35.239 1 31.1 ? C13 OBT 601 B 1 HETATM 15 C C14 OBT . . . F 3 -7.275 -17.501 -34.49 1 29.65 ? C14 OBT 601 B 1 HETATM 16 C C15 OBT . . . F 3 -7.636 -17.007 -33.313 1 28.18 ? C15 OBT 601 B 1 HETATM 17 C C16 OBT . . . F 3 -8.904 -16.981 -32.922 1 28.52 ? C16 OBT 601 B 1 HETATM 18 O O02 OBT . . . F 3 -6.014 -17.536 -34.901 1 29.46 ? O02 OBT 601 B 1 HETATM 19 C C17 OBT . . . F 3 -13.108 -18.072 -31.299 1 33.54 ? C17 OBT 601 B 1 HETATM 20 C C18 OBT . . . F 3 -12.008 -17.048 -30.953 1 33.22 ? C18 OBT 601 B 1 HETATM 21 S S01 OBT . . . F 3 -14.578 -18.15 -30.196 1 40.67 ? S01 OBT 601 B 1 HETATM 22 O O03 OBT . . . F 3 -13.057 -16.243 -32.705 1 37.54 ? O03 OBT 601 B 1 HETATM 23 N N01 OBT . . . F 3 -15.572 -19.402 -30.51 1 53.88 ? N01 OBT 601 B 1 HETATM 24 O O04 OBT . . . F 3 -14.946 -16.842 -30.276 1 35.8 ? O04 OBT 601 B 1 HETATM 25 O O05 OBT . . . F 3 -13.85 -18.54 -29.111 1 45.39 ? O05 OBT 601 B 1 HETATM 26 C C19 OBT . . . F 3 -16.968 -19.218 -29.964 1 63.68 ? C19 OBT 601 B 1 HETATM 27 C C20 OBT . . . F 3 -18 -19.013 -30.959 1 69.08 ? C20 OBT 601 B 1 HETATM 28 F F1 OBT . . . F 3 -18.359 -20.117 -31.437 1 71.25 ? F1 OBT 601 B 1 HETATM 29 F F2 OBT . . . F 3 -19.064 -18.437 -30.602 1 68.81 ? F2 OBT 601 B 1 HETATM 30 F F3 OBT . . . F 3 -17.513 -18.304 -31.883 1 71.67 ? F3 OBT 601 B 1 HETATM 31 C C21 OBT . . . F 3 -15.192 -20.51 -30.98 1 46.3 ? C21 OBT 601 B 1 HETATM 32 C C22 OBT . . . F 3 -15.187 -20.919 -32.242 1 43.69 ? C22 OBT 601 B 1 HETATM 33 C C23 OBT . . . F 3 -14.799 -22.124 -32.622 1 42.67 ? C23 OBT 601 B 1 HETATM 34 C C24 OBT . . . F 3 -14.383 -22.999 -31.736 1 43.52 ? C24 OBT 601 B 1 HETATM 35 C C25 OBT . . . F 3 -14.388 -22.643 -30.471 1 42.27 ? C25 OBT 601 B 1 HETATM 36 C C26 OBT . . . F 3 -14.788 -21.435 -30.127 1 45.91 ? C26 OBT 601 B 1 HETATM 37 CL CL1 OBT . . . F 3 -13.895 -24.546 -32.216 1 46.11 ? CL1 OBT 601 B 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 37 #