data_5KDD
#
_model_server_result.job_id            RiGNKylb0VEeLim_VR4EVA 
_model_server_result.datetime_utc      '2024-11-28 23:00:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5kdd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":402}' 
#
_entry.id    5KDD 
#
_exptl.entry_id    5KDD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              96.063 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SULFATE ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         78.66 
_cell.angle_beta          85.49 
_cell.angle_gamma         63.63 
_cell.entry_id            5KDD 
_cell.length_a            37.849 
_cell.length_b            42.583 
_cell.length_c            86.441 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5KDD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
#
_chem_comp.formula           'O4 S -2' 
_chem_comp.formula_weight    96.063 
_chem_comp.id                SO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SULFATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O1 SO4 doub 277 n n 
S O2 SO4 doub 278 n n 
S O3 SO4 sing 279 n n 
S O4 SO4 sing 280 n n 
#
_atom_sites.entry_id                     5KDD 
_atom_sites.fract_transf_matrix[1][1]    0.026421 
_atom_sites.fract_transf_matrix[1][2]    -0.013098 
_atom_sites.fract_transf_matrix[1][3]    0.000292 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.026211 
_atom_sites.fract_transf_matrix[2][3]    -0.004825 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.0118 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SO4 A 1 401 1 SO4 SO4 . 
D 2 SO4 A 1 402 3 SO4 SO4 . 
E 2 SO4 B 1 401 2 SO4 SO4 . 
F 2 SO4 B 1 402 4 SO4 SO4 . 
G 3 HOH A 1 501 159 HOH HOH . 
G 3 HOH A 2 502 65 HOH HOH . 
G 3 HOH A 3 503 220 HOH HOH . 
G 3 HOH A 4 504 74 HOH HOH . 
G 3 HOH A 5 505 178 HOH HOH . 
G 3 HOH A 6 506 166 HOH HOH . 
G 3 HOH A 7 507 172 HOH HOH . 
G 3 HOH A 8 508 7 HOH HOH . 
G 3 HOH A 9 509 163 HOH HOH . 
G 3 HOH A 10 510 118 HOH HOH . 
G 3 HOH A 11 511 36 HOH HOH . 
G 3 HOH A 12 512 57 HOH HOH . 
G 3 HOH A 13 513 135 HOH HOH . 
G 3 HOH A 14 514 19 HOH HOH . 
G 3 HOH A 15 515 89 HOH HOH . 
G 3 HOH A 16 516 130 HOH HOH . 
G 3 HOH A 17 517 75 HOH HOH . 
G 3 HOH A 18 518 133 HOH HOH . 
G 3 HOH A 19 519 176 HOH HOH . 
G 3 HOH A 20 520 196 HOH HOH . 
G 3 HOH A 21 521 116 HOH HOH . 
G 3 HOH A 22 522 154 HOH HOH . 
G 3 HOH A 23 523 15 HOH HOH . 
G 3 HOH A 24 524 8 HOH HOH . 
G 3 HOH A 25 525 37 HOH HOH . 
G 3 HOH A 26 526 200 HOH HOH . 
G 3 HOH A 27 527 157 HOH HOH . 
G 3 HOH A 28 528 48 HOH HOH . 
G 3 HOH A 29 529 213 HOH HOH . 
G 3 HOH A 30 530 28 HOH HOH . 
G 3 HOH A 31 531 138 HOH HOH . 
G 3 HOH A 32 532 88 HOH HOH . 
G 3 HOH A 33 533 195 HOH HOH . 
G 3 HOH A 34 534 64 HOH HOH . 
G 3 HOH A 35 535 155 HOH HOH . 
G 3 HOH A 36 536 122 HOH HOH . 
G 3 HOH A 37 537 136 HOH HOH . 
G 3 HOH A 38 538 137 HOH HOH . 
G 3 HOH A 39 539 186 HOH HOH . 
G 3 HOH A 40 540 41 HOH HOH . 
G 3 HOH A 41 541 147 HOH HOH . 
G 3 HOH A 42 542 224 HOH HOH . 
G 3 HOH A 43 543 152 HOH HOH . 
G 3 HOH A 44 544 187 HOH HOH . 
G 3 HOH A 45 545 6 HOH HOH . 
G 3 HOH A 46 546 207 HOH HOH . 
G 3 HOH A 47 547 46 HOH HOH . 
G 3 HOH A 48 548 1 HOH HOH . 
G 3 HOH A 49 549 14 HOH HOH . 
G 3 HOH A 50 550 11 HOH HOH . 
G 3 HOH A 51 551 194 HOH HOH . 
G 3 HOH A 52 552 188 HOH HOH . 
G 3 HOH A 53 553 160 HOH HOH . 
G 3 HOH A 54 554 204 HOH HOH . 
G 3 HOH A 55 555 179 HOH HOH . 
G 3 HOH A 56 556 144 HOH HOH . 
G 3 HOH A 57 557 221 HOH HOH . 
G 3 HOH A 58 558 181 HOH HOH . 
G 3 HOH A 59 559 13 HOH HOH . 
G 3 HOH A 60 560 145 HOH HOH . 
G 3 HOH A 61 561 201 HOH HOH . 
G 3 HOH A 62 562 143 HOH HOH . 
G 3 HOH A 63 563 211 HOH HOH . 
G 3 HOH A 64 564 56 HOH HOH . 
G 3 HOH A 65 565 183 HOH HOH . 
G 3 HOH A 66 566 109 HOH HOH . 
G 3 HOH A 67 567 132 HOH HOH . 
G 3 HOH A 68 568 32 HOH HOH . 
G 3 HOH A 69 569 177 HOH HOH . 
G 3 HOH A 70 570 59 HOH HOH . 
G 3 HOH A 71 571 164 HOH HOH . 
G 3 HOH A 72 572 185 HOH HOH . 
G 3 HOH A 73 573 29 HOH HOH . 
G 3 HOH A 74 574 182 HOH HOH . 
G 3 HOH A 75 575 24 HOH HOH . 
G 3 HOH A 76 576 156 HOH HOH . 
G 3 HOH A 77 577 205 HOH HOH . 
G 3 HOH A 78 578 150 HOH HOH . 
G 3 HOH A 79 579 190 HOH HOH . 
G 3 HOH A 80 580 10 HOH HOH . 
G 3 HOH A 81 581 229 HOH HOH . 
G 3 HOH A 82 582 61 HOH HOH . 
G 3 HOH A 83 583 42 HOH HOH . 
G 3 HOH A 84 584 76 HOH HOH . 
G 3 HOH A 85 585 101 HOH HOH . 
G 3 HOH A 86 586 127 HOH HOH . 
G 3 HOH A 87 587 52 HOH HOH . 
G 3 HOH A 88 588 117 HOH HOH . 
G 3 HOH A 89 589 231 HOH HOH . 
G 3 HOH A 90 590 112 HOH HOH . 
G 3 HOH A 91 591 226 HOH HOH . 
G 3 HOH A 92 592 77 HOH HOH . 
G 3 HOH A 93 593 139 HOH HOH . 
G 3 HOH A 94 594 58 HOH HOH . 
G 3 HOH A 95 595 237 HOH HOH . 
G 3 HOH A 96 596 43 HOH HOH . 
G 3 HOH A 97 597 53 HOH HOH . 
G 3 HOH A 98 598 62 HOH HOH . 
G 3 HOH A 99 599 106 HOH HOH . 
G 3 HOH A 100 600 93 HOH HOH . 
G 3 HOH A 101 601 40 HOH HOH . 
G 3 HOH A 102 602 230 HOH HOH . 
G 3 HOH A 103 603 115 HOH HOH . 
G 3 HOH A 104 604 214 HOH HOH . 
G 3 HOH A 105 605 91 HOH HOH . 
G 3 HOH A 106 606 227 HOH HOH . 
G 3 HOH A 107 607 170 HOH HOH . 
G 3 HOH A 108 608 184 HOH HOH . 
G 3 HOH A 109 609 110 HOH HOH . 
G 3 HOH A 110 610 35 HOH HOH . 
G 3 HOH A 111 611 96 HOH HOH . 
G 3 HOH A 112 612 238 HOH HOH . 
G 3 HOH A 113 613 31 HOH HOH . 
G 3 HOH A 114 614 45 HOH HOH . 
G 3 HOH A 115 615 121 HOH HOH . 
G 3 HOH A 116 616 71 HOH HOH . 
G 3 HOH A 117 617 22 HOH HOH . 
G 3 HOH A 118 618 44 HOH HOH . 
G 3 HOH A 119 619 100 HOH HOH . 
G 3 HOH A 120 620 78 HOH HOH . 
G 3 HOH A 121 621 95 HOH HOH . 
G 3 HOH A 122 622 55 HOH HOH . 
G 3 HOH A 123 623 228 HOH HOH . 
G 3 HOH A 124 624 50 HOH HOH . 
G 3 HOH A 125 625 236 HOH HOH . 
G 3 HOH A 126 626 82 HOH HOH . 
G 3 HOH A 127 627 54 HOH HOH . 
G 3 HOH A 128 628 239 HOH HOH . 
G 3 HOH A 129 629 113 HOH HOH . 
H 3 HOH B 1 501 129 HOH HOH . 
H 3 HOH B 2 502 69 HOH HOH . 
H 3 HOH B 3 503 162 HOH HOH . 
H 3 HOH B 4 504 141 HOH HOH . 
H 3 HOH B 5 505 173 HOH HOH . 
H 3 HOH B 6 506 131 HOH HOH . 
H 3 HOH B 7 507 97 HOH HOH . 
H 3 HOH B 8 508 142 HOH HOH . 
H 3 HOH B 9 509 5 HOH HOH . 
H 3 HOH B 10 510 165 HOH HOH . 
H 3 HOH B 11 511 79 HOH HOH . 
H 3 HOH B 12 512 2 HOH HOH . 
H 3 HOH B 13 513 102 HOH HOH . 
H 3 HOH B 14 514 4 HOH HOH . 
H 3 HOH B 15 515 25 HOH HOH . 
H 3 HOH B 16 516 149 HOH HOH . 
H 3 HOH B 17 517 202 HOH HOH . 
H 3 HOH B 18 518 171 HOH HOH . 
H 3 HOH B 19 519 219 HOH HOH . 
H 3 HOH B 20 520 12 HOH HOH . 
H 3 HOH B 21 521 158 HOH HOH . 
H 3 HOH B 22 522 73 HOH HOH . 
H 3 HOH B 23 523 192 HOH HOH . 
H 3 HOH B 24 524 107 HOH HOH . 
H 3 HOH B 25 525 206 HOH HOH . 
H 3 HOH B 26 526 189 HOH HOH . 
H 3 HOH B 27 527 225 HOH HOH . 
H 3 HOH B 28 528 222 HOH HOH . 
H 3 HOH B 29 529 33 HOH HOH . 
H 3 HOH B 30 530 120 HOH HOH . 
H 3 HOH B 31 531 125 HOH HOH . 
H 3 HOH B 32 532 38 HOH HOH . 
H 3 HOH B 33 533 103 HOH HOH . 
H 3 HOH B 34 534 198 HOH HOH . 
H 3 HOH B 35 535 210 HOH HOH . 
H 3 HOH B 36 536 203 HOH HOH . 
H 3 HOH B 37 537 16 HOH HOH . 
H 3 HOH B 38 538 70 HOH HOH . 
H 3 HOH B 39 539 180 HOH HOH . 
H 3 HOH B 40 540 80 HOH HOH . 
H 3 HOH B 41 541 218 HOH HOH . 
H 3 HOH B 42 542 114 HOH HOH . 
H 3 HOH B 43 543 17 HOH HOH . 
H 3 HOH B 44 544 30 HOH HOH . 
H 3 HOH B 45 545 63 HOH HOH . 
H 3 HOH B 46 546 18 HOH HOH . 
H 3 HOH B 47 547 67 HOH HOH . 
H 3 HOH B 48 548 72 HOH HOH . 
H 3 HOH B 49 549 175 HOH HOH . 
H 3 HOH B 50 550 81 HOH HOH . 
H 3 HOH B 51 551 146 HOH HOH . 
H 3 HOH B 52 552 167 HOH HOH . 
H 3 HOH B 53 553 153 HOH HOH . 
H 3 HOH B 54 554 92 HOH HOH . 
H 3 HOH B 55 555 9 HOH HOH . 
H 3 HOH B 56 556 199 HOH HOH . 
H 3 HOH B 57 557 209 HOH HOH . 
H 3 HOH B 58 558 39 HOH HOH . 
H 3 HOH B 59 559 233 HOH HOH . 
H 3 HOH B 60 560 68 HOH HOH . 
H 3 HOH B 61 561 49 HOH HOH . 
H 3 HOH B 62 562 223 HOH HOH . 
H 3 HOH B 63 563 174 HOH HOH . 
H 3 HOH B 64 564 208 HOH HOH . 
H 3 HOH B 65 565 85 HOH HOH . 
H 3 HOH B 66 566 27 HOH HOH . 
H 3 HOH B 67 567 215 HOH HOH . 
H 3 HOH B 68 568 217 HOH HOH . 
H 3 HOH B 69 569 134 HOH HOH . 
H 3 HOH B 70 570 23 HOH HOH . 
H 3 HOH B 71 571 197 HOH HOH . 
H 3 HOH B 72 572 124 HOH HOH . 
H 3 HOH B 73 573 140 HOH HOH . 
H 3 HOH B 74 574 99 HOH HOH . 
H 3 HOH B 75 575 151 HOH HOH . 
H 3 HOH B 76 576 193 HOH HOH . 
H 3 HOH B 77 577 161 HOH HOH . 
H 3 HOH B 78 578 216 HOH HOH . 
H 3 HOH B 79 579 168 HOH HOH . 
H 3 HOH B 80 580 90 HOH HOH . 
H 3 HOH B 81 581 212 HOH HOH . 
H 3 HOH B 82 582 191 HOH HOH . 
H 3 HOH B 83 583 98 HOH HOH . 
H 3 HOH B 84 584 148 HOH HOH . 
H 3 HOH B 85 585 234 HOH HOH . 
H 3 HOH B 86 586 21 HOH HOH . 
H 3 HOH B 87 587 104 HOH HOH . 
H 3 HOH B 88 588 51 HOH HOH . 
H 3 HOH B 89 589 108 HOH HOH . 
H 3 HOH B 90 590 235 HOH HOH . 
H 3 HOH B 91 591 26 HOH HOH . 
H 3 HOH B 92 592 111 HOH HOH . 
H 3 HOH B 93 593 119 HOH HOH . 
H 3 HOH B 94 594 169 HOH HOH . 
H 3 HOH B 95 595 60 HOH HOH . 
H 3 HOH B 96 596 83 HOH HOH . 
H 3 HOH B 97 597 20 HOH HOH . 
H 3 HOH B 98 598 84 HOH HOH . 
H 3 HOH B 99 599 3 HOH HOH . 
H 3 HOH B 100 600 128 HOH HOH . 
H 3 HOH B 101 601 87 HOH HOH . 
H 3 HOH B 102 602 123 HOH HOH . 
H 3 HOH B 103 603 94 HOH HOH . 
H 3 HOH B 104 604 34 HOH HOH . 
H 3 HOH B 105 605 232 HOH HOH . 
H 3 HOH B 106 606 126 HOH HOH . 
H 3 HOH B 107 607 47 HOH HOH . 
H 3 HOH B 108 608 66 HOH HOH . 
H 3 HOH B 109 609 105 HOH HOH . 
H 3 HOH B 110 610 86 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S SO4 . . . F 2 -12.975 -22.383 -20.503 1 50.94 ? S SO4 402 B 1 
HETATM 2 O O1 SO4 . . . F 2 -11.574 -22.139 -20.839 1 52.96 ? O1 SO4 402 B 1 
HETATM 3 O O2 SO4 . . . F 2 -13.802 -21.494 -21.33 1 48.67 ? O2 SO4 402 B 1 
HETATM 4 O O3 SO4 . . . F 2 -13.291 -23.777 -20.82 1 52.71 ? O3 SO4 402 B 1 
HETATM 5 O O4 SO4 . . . F 2 -13.203 -22.189 -19.072 1 48.94 ? O4 SO4 402 B 1 
#
_model_server_stats.io_time_ms              35 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           422 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           5 
#