data_5KDE # _model_server_result.job_id Ob83kqham1iesNSgHothEw _model_server_result.datetime_utc '2024-10-10 01:23:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kde # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5KDE # _exptl.entry_id 5KDE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 304.349 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,4-bis(aziridin-1-yl)-6-(1-phenylpyrrol-2-yl)-1,3,5-triazine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5KDE _cell.length_a 99.965 _cell.length_b 99.965 _cell.length_c 97.559 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KDE _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_535 -y,x-y-2,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 99.965 -173.144459 0 3 'crystal symmetry operation' 3_755 -x+y+2,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 199.93 0 0 4 'crystal symmetry operation' 10_557 -y,-x,-z+5/2 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 0 0 243.8975 5 'crystal symmetry operation' 11_757 -x+y+2,y,-z+5/2 -1 0 0 0 1 0 0 0 -1 199.93 0 243.8975 6 'crystal symmetry operation' 12_537 x,x-y-2,-z+5/2 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 99.965 -173.144459 243.8975 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H16 N6' _chem_comp.formula_weight 304.349 _chem_comp.id 6RT _chem_comp.mon_nstd_flag . _chem_comp.name 2,4-bis(aziridin-1-yl)-6-(1-phenylpyrrol-2-yl)-1,3,5-triazine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C12 N2 6RT sing 1 n n C12 C13 6RT sing 2 n n C16 N4 6RT sing 3 n n C16 C15 6RT sing 4 n n C9 C10 6RT doub 5 n y C9 C8 6RT sing 6 n y C10 C5 6RT sing 7 n y N3 C14 6RT doub 8 n y N3 C11 6RT sing 9 n y N2 C11 6RT sing 10 n n N2 C13 6RT sing 11 n n N4 C14 6RT sing 12 n n N4 C15 6RT sing 13 n n C14 N5 6RT sing 14 n y C11 N1 6RT doub 15 n y C8 C7 6RT doub 16 n y N5 C 6RT doub 17 n y N1 C 6RT sing 18 n y C C1 6RT sing 19 n n C5 N 6RT sing 20 n n C5 C6 6RT doub 21 n y C1 N 6RT sing 22 n y C1 C2 6RT doub 23 n y N C4 6RT sing 24 n y C7 C6 6RT sing 25 n y C2 C3 6RT sing 26 n y C4 C3 6RT doub 27 n y C12 H1 6RT sing 28 n n C12 H2 6RT sing 29 n n C13 H3 6RT sing 30 n n C13 H4 6RT sing 31 n n C16 H5 6RT sing 32 n n C16 H6 6RT sing 33 n n C15 H7 6RT sing 34 n n C15 H8 6RT sing 35 n n C4 H9 6RT sing 36 n n C3 H10 6RT sing 37 n n C2 H11 6RT sing 38 n n C10 H12 6RT sing 39 n n C9 H13 6RT sing 40 n n C8 H14 6RT sing 41 n n C7 H15 6RT sing 42 n n C6 H16 6RT sing 43 n n # _atom_sites.entry_id 5KDE _atom_sites.fract_transf_matrix[1][1] 0.010004 _atom_sites.fract_transf_matrix[1][2] 0.005776 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011551 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01025 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6RT A 1 201 1 6RT MMI . C 3 POP A 1 202 1 POP POP . D 4 HOH A 1 301 9 HOH HOH . D 4 HOH A 2 302 14 HOH HOH . D 4 HOH A 3 303 7 HOH HOH . D 4 HOH A 4 304 5 HOH HOH . D 4 HOH A 5 305 4 HOH HOH . D 4 HOH A 6 306 8 HOH HOH . D 4 HOH A 7 307 15 HOH HOH . D 4 HOH A 8 308 3 HOH HOH . D 4 HOH A 9 309 9 HOH HOH . D 4 HOH A 10 310 11 HOH HOH . D 4 HOH A 11 311 20 HOH HOH . D 4 HOH A 12 312 15 HOH HOH . D 4 HOH A 13 313 10 HOH HOH . D 4 HOH A 14 314 21 HOH HOH . D 4 HOH A 15 315 4 HOH HOH . D 4 HOH A 16 316 19 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 6RT . . . B 2 82.993 -70.539 118.768 1 80.94 ? C11 6RT 201 A 1 HETATM 2 C C12 6RT . . . B 2 85.308 -71.23 117.526 1 81.06 ? C12 6RT 201 A 1 HETATM 3 C C13 6RT . . . B 2 85.624 -71.137 119.057 1 81.01 ? C13 6RT 201 A 1 HETATM 4 C C14 6RT . . . B 2 80.709 -71.086 118.76 1 82.74 ? C14 6RT 201 A 1 HETATM 5 N N1 6RT . . . B 2 82.706 -69.313 119.283 1 80.79 ? N1 6RT 201 A 1 HETATM 6 C C16 6RT . . . B 2 78.522 -72.291 117.686 1 83.45 ? C16 6RT 201 A 1 HETATM 7 C C15 6RT . . . B 2 78.87 -73.071 118.996 1 83.82 ? C15 6RT 201 A 1 HETATM 8 N N3 6RT . . . B 2 81.998 -71.429 118.506 1 81.61 ? N3 6RT 201 A 1 HETATM 9 N N4 6RT . . . B 2 79.643 -71.962 118.516 1 83.64 ? N4 6RT 201 A 1 HETATM 10 N N5 6RT . . . B 2 80.435 -69.867 119.274 1 82.63 ? N5 6RT 201 A 1 HETATM 11 N N2 6RT . . . B 2 84.324 -70.887 118.51 1 80.99 ? N2 6RT 201 A 1 HETATM 12 C C 6RT . . . B 2 81.417 -68.97 119.537 1 81.95 ? C 6RT 201 A 1 HETATM 13 C C1 6RT . . . B 2 81.079 -67.624 120.106 1 82.37 ? C1 6RT 201 A 1 HETATM 14 N N 6RT . . . B 2 79.888 -67.019 120.22 1 81.71 ? N 6RT 201 A 1 HETATM 15 C C4 6RT . . . B 2 79.925 -65.812 120.778 1 82.82 ? C4 6RT 201 A 1 HETATM 16 C C3 6RT . . . B 2 81.26 -65.594 121.063 1 83.52 ? C3 6RT 201 A 1 HETATM 17 C C2 6RT . . . B 2 81.976 -66.711 120.65 1 83.39 ? C2 6RT 201 A 1 HETATM 18 C C5 6RT . . . B 2 78.737 -67.566 119.807 1 79.73 ? C5 6RT 201 A 1 HETATM 19 C C10 6RT . . . B 2 78.285 -67.429 118.486 1 78.32 ? C10 6RT 201 A 1 HETATM 20 C C9 6RT . . . B 2 77.095 -68.005 118.037 1 78.03 ? C9 6RT 201 A 1 HETATM 21 C C8 6RT . . . B 2 76.315 -68.754 118.913 1 78.51 ? C8 6RT 201 A 1 HETATM 22 C C7 6RT . . . B 2 76.734 -68.914 120.231 1 78.94 ? C7 6RT 201 A 1 HETATM 23 C C6 6RT . . . B 2 77.926 -68.328 120.663 1 79.41 ? C6 6RT 201 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 244 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 23 #