data_5KDH # _model_server_result.job_id sCT8pfwNxTZ3ixwSF8Kqgg _model_server_result.datetime_utc '2025-01-10 15:10:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kdh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5KDH # _exptl.entry_id 5KDH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 339.345 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (5~{S})-1-ethyl-5-(4-methylphenyl)-8,9-dihydro-5~{H}-furo[3,4]pyrido[3,5-~{b}]pyrimidine-2,4,6-trione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KDH _cell.length_a 42.12 _cell.length_b 48.56 _cell.length_c 61.6 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KDH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C18 H17 N3 O4' _chem_comp.formula_weight 339.345 _chem_comp.id 6RX _chem_comp.mon_nstd_flag . _chem_comp.name (5~{S})-1-ethyl-5-(4-methylphenyl)-8,9-dihydro-5~{H}-furo[3,4]pyrido[3,5-~{b}]pyrimidine-2,4,6-trione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C02 6RX sing 1 n n C25 C02 6RX doub 2 n y C25 C24 6RX sing 3 n y C02 C03 6RX sing 4 n y C24 C05 6RX doub 5 n y O15 C08 6RX doub 6 n n C03 C04 6RX doub 7 n y C05 C04 6RX sing 8 n y C05 C06 6RX sing 9 n n C08 N09 6RX sing 10 n n C08 C07 6RX sing 11 n n O23 C22 6RX doub 12 n n C06 C07 6RX sing 13 n n C06 C21 6RX sing 14 n n N09 C10 6RX sing 15 n n C07 C16 6RX doub 16 n n C22 C21 6RX sing 17 n n C22 O20 6RX sing 18 n n C21 C18 6RX doub 19 n n C10 O14 6RX doub 20 n n C10 N11 6RX sing 21 n n C16 N11 6RX sing 22 n n C16 N17 6RX sing 23 n n O20 C19 6RX sing 24 n n C18 N17 6RX sing 25 n n C18 C19 6RX sing 26 n n N11 C12 6RX sing 27 n n C12 C13 6RX sing 28 n n C13 H132 6RX sing 29 n n C13 H131 6RX sing 30 n n C13 H133 6RX sing 31 n n C24 H241 6RX sing 32 n n C01 H012 6RX sing 33 n n C01 H011 6RX sing 34 n n C01 H013 6RX sing 35 n n C03 H031 6RX sing 36 n n C04 H041 6RX sing 37 n n C06 H061 6RX sing 38 n n N09 H091 6RX sing 39 n n C12 H121 6RX sing 40 n n C12 H122 6RX sing 41 n n N17 H171 6RX sing 42 n n C19 H191 6RX sing 43 n n C19 H192 6RX sing 44 n n C25 H251 6RX sing 45 n n # _atom_sites.entry_id 5KDH _atom_sites.fract_transf_matrix[1][1] 0.023742 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020593 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016234 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6RX A 1 201 1 6RX LIG . C 3 EDO A 1 202 1 EDO EDO . D 4 SO4 A 1 203 1 SO4 SO4 . E 4 SO4 A 1 204 2 SO4 SO4 . F 5 HOH A 1 301 85 HOH HOH . F 5 HOH A 2 302 49 HOH HOH . F 5 HOH A 3 303 86 HOH HOH . F 5 HOH A 4 304 88 HOH HOH . F 5 HOH A 5 305 83 HOH HOH . F 5 HOH A 6 306 29 HOH HOH . F 5 HOH A 7 307 44 HOH HOH . F 5 HOH A 8 308 81 HOH HOH . F 5 HOH A 9 309 54 HOH HOH . F 5 HOH A 10 310 74 HOH HOH . F 5 HOH A 11 311 35 HOH HOH . F 5 HOH A 12 312 19 HOH HOH . F 5 HOH A 13 313 13 HOH HOH . F 5 HOH A 14 314 33 HOH HOH . F 5 HOH A 15 315 46 HOH HOH . F 5 HOH A 16 316 5 HOH HOH . F 5 HOH A 17 317 95 HOH HOH . F 5 HOH A 18 318 37 HOH HOH . F 5 HOH A 19 319 69 HOH HOH . F 5 HOH A 20 320 8 HOH HOH . F 5 HOH A 21 321 53 HOH HOH . F 5 HOH A 22 322 3 HOH HOH . F 5 HOH A 23 323 20 HOH HOH . F 5 HOH A 24 324 84 HOH HOH . F 5 HOH A 25 325 64 HOH HOH . F 5 HOH A 26 326 30 HOH HOH . F 5 HOH A 27 327 39 HOH HOH . F 5 HOH A 28 328 94 HOH HOH . F 5 HOH A 29 329 31 HOH HOH . F 5 HOH A 30 330 78 HOH HOH . F 5 HOH A 31 331 7 HOH HOH . F 5 HOH A 32 332 10 HOH HOH . F 5 HOH A 33 333 4 HOH HOH . F 5 HOH A 34 334 36 HOH HOH . F 5 HOH A 35 335 2 HOH HOH . F 5 HOH A 36 336 6 HOH HOH . F 5 HOH A 37 337 21 HOH HOH . F 5 HOH A 38 338 14 HOH HOH . F 5 HOH A 39 339 40 HOH HOH . F 5 HOH A 40 340 24 HOH HOH . F 5 HOH A 41 341 72 HOH HOH . F 5 HOH A 42 342 11 HOH HOH . F 5 HOH A 43 343 48 HOH HOH . F 5 HOH A 44 344 16 HOH HOH . F 5 HOH A 45 345 22 HOH HOH . F 5 HOH A 46 346 43 HOH HOH . F 5 HOH A 47 347 60 HOH HOH . F 5 HOH A 48 348 26 HOH HOH . F 5 HOH A 49 349 66 HOH HOH . F 5 HOH A 50 350 27 HOH HOH . F 5 HOH A 51 351 34 HOH HOH . F 5 HOH A 52 352 61 HOH HOH . F 5 HOH A 53 353 1 HOH HOH . F 5 HOH A 54 354 57 HOH HOH . F 5 HOH A 55 355 82 HOH HOH . F 5 HOH A 56 356 67 HOH HOH . F 5 HOH A 57 357 59 HOH HOH . F 5 HOH A 58 358 17 HOH HOH . F 5 HOH A 59 359 76 HOH HOH . F 5 HOH A 60 360 32 HOH HOH . F 5 HOH A 61 361 73 HOH HOH . F 5 HOH A 62 362 12 HOH HOH . F 5 HOH A 63 363 71 HOH HOH . F 5 HOH A 64 364 15 HOH HOH . F 5 HOH A 65 365 56 HOH HOH . F 5 HOH A 66 366 89 HOH HOH . F 5 HOH A 67 367 41 HOH HOH . F 5 HOH A 68 368 23 HOH HOH . F 5 HOH A 69 369 45 HOH HOH . F 5 HOH A 70 370 79 HOH HOH . F 5 HOH A 71 371 18 HOH HOH . F 5 HOH A 72 372 90 HOH HOH . F 5 HOH A 73 373 47 HOH HOH . F 5 HOH A 74 374 80 HOH HOH . F 5 HOH A 75 375 55 HOH HOH . F 5 HOH A 76 376 68 HOH HOH . F 5 HOH A 77 377 52 HOH HOH . F 5 HOH A 78 378 96 HOH HOH . F 5 HOH A 79 379 9 HOH HOH . F 5 HOH A 80 380 65 HOH HOH . F 5 HOH A 81 381 42 HOH HOH . F 5 HOH A 82 382 93 HOH HOH . F 5 HOH A 83 383 91 HOH HOH . F 5 HOH A 84 384 58 HOH HOH . F 5 HOH A 85 385 77 HOH HOH . F 5 HOH A 86 386 63 HOH HOH . F 5 HOH A 87 387 87 HOH HOH . F 5 HOH A 88 388 28 HOH HOH . F 5 HOH A 89 389 92 HOH HOH . F 5 HOH A 90 390 38 HOH HOH . F 5 HOH A 91 391 25 HOH HOH . F 5 HOH A 92 392 70 HOH HOH . F 5 HOH A 93 393 51 HOH HOH . F 5 HOH A 94 394 50 HOH HOH . F 5 HOH A 95 395 62 HOH HOH . F 5 HOH A 96 396 75 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 6RX . . . B 2 8.554 -6.432 -20.691 1 18.51 ? C10 6RX 201 A 1 HETATM 2 C C13 6RX . . . B 2 10.249 -5.104 -18.176 1 17.7 ? C13 6RX 201 A 1 HETATM 3 C C21 6RX . . . B 2 6.801 -1.713 -21.289 1 21.73 ? C21 6RX 201 A 1 HETATM 4 C C22 6RX . . . B 2 6.261 -0.442 -21.377 1 23.98 ? C22 6RX 201 A 1 HETATM 5 C C24 6RX . . . B 2 7.69 -2.21 -24.693 1 20.95 ? C24 6RX 201 A 1 HETATM 6 C C01 6RX . . . B 2 10.866 -0.654 -26.066 1 18.28 ? C01 6RX 201 A 1 HETATM 7 C C02 6RX . . . B 2 9.876 -1.189 -25.116 1 19.42 ? C02 6RX 201 A 1 HETATM 8 C C03 6RX . . . B 2 10.123 -1.209 -23.736 1 19.5 ? C03 6RX 201 A 1 HETATM 9 C C04 6RX . . . B 2 9.167 -1.72 -22.85 1 19.15 ? C04 6RX 201 A 1 HETATM 10 C C05 6RX . . . B 2 7.924 -2.228 -23.3 1 20.86 ? C05 6RX 201 A 1 HETATM 11 C C06 6RX . . . B 2 6.945 -2.765 -22.299 1 21.75 ? C06 6RX 201 A 1 HETATM 12 C C07 6RX . . . B 2 7.463 -4.078 -21.747 1 19.85 ? C07 6RX 201 A 1 HETATM 13 C C08 6RX . . . B 2 7.658 -5.247 -22.542 1 21.34 ? C08 6RX 201 A 1 HETATM 14 N N09 6RX . . . B 2 8.181 -6.377 -21.993 1 20.36 ? N09 6RX 201 A 1 HETATM 15 N N11 6RX . . . B 2 8.402 -5.337 -19.87 1 17.94 ? N11 6RX 201 A 1 HETATM 16 C C12 6RX . . . B 2 8.789 -5.466 -18.476 1 19.16 ? C12 6RX 201 A 1 HETATM 17 O O14 6RX . . . B 2 9.041 -7.519 -20.281 1 19.05 ? O14 6RX 201 A 1 HETATM 18 O O15 6RX . . . B 2 7.341 -5.306 -23.764 1 25.95 ? O15 6RX 201 A 1 HETATM 19 C C16 6RX . . . B 2 7.878 -4.165 -20.386 1 18.07 ? C16 6RX 201 A 1 HETATM 20 N N17 6RX . . . B 2 7.724 -3.056 -19.589 1 18.98 ? N17 6RX 201 A 1 HETATM 21 C C18 6RX . . . B 2 7.203 -1.899 -20.03 1 20.89 ? C18 6RX 201 A 1 HETATM 22 C C19 6RX . . . B 2 6.916 -0.75 -19.207 1 22.99 ? C19 6RX 201 A 1 HETATM 23 O O20 6RX . . . B 2 6.398 0.167 -20.178 1 25.21 ? O20 6RX 201 A 1 HETATM 24 O O23 6RX . . . B 2 5.718 0.132 -22.365 1 24.9 ? O23 6RX 201 A 1 HETATM 25 C C25 6RX . . . B 2 8.652 -1.699 -25.587 1 20.65 ? C25 6RX 201 A 1 HETATM 26 H H132 6RX . . . B 2 10.696 -4.824 -19.008 1 21.24 ? H132 6RX 201 A 1 HETATM 27 H H131 6RX . . . B 2 10.712 -5.889 -17.803 1 21.24 ? H131 6RX 201 A 1 HETATM 28 H H133 6RX . . . B 2 10.277 -4.367 -17.525 1 21.24 ? H133 6RX 201 A 1 HETATM 29 H H241 6RX . . . B 2 6.843 -2.557 -25.044 1 25.14 ? H241 6RX 201 A 1 HETATM 30 H H012 6RX . . . B 2 10.61 -0.903 -26.982 1 21.94 ? H012 6RX 201 A 1 HETATM 31 H H011 6RX . . . B 2 10.896 0.326 -25.989 1 21.94 ? H011 6RX 201 A 1 HETATM 32 H H013 6RX . . . B 2 11.751 -1.026 -25.86 1 21.94 ? H013 6RX 201 A 1 HETATM 33 H H031 6RX . . . B 2 10.971 -0.858 -23.389 1 23.4 ? H031 6RX 201 A 1 HETATM 34 H H041 6RX . . . B 2 9.361 -1.72 -21.888 1 22.98 ? H041 6RX 201 A 1 HETATM 35 H H061 6RX . . . B 2 6.153 -2.87 -22.871 1 26.1 ? H061 6RX 201 A 1 HETATM 36 H H091 6RX . . . B 2 8.292 -7.12 -22.521 1 24.43 ? H091 6RX 201 A 1 HETATM 37 H H121 6RX . . . B 2 8.637 -6.395 -18.198 1 22.99 ? H121 6RX 201 A 1 HETATM 38 H H122 6RX . . . B 2 8.209 -4.882 -17.939 1 22.99 ? H122 6RX 201 A 1 HETATM 39 H H171 6RX . . . B 2 7.969 -3.115 -18.707 1 22.78 ? H171 6RX 201 A 1 HETATM 40 H H191 6RX . . . B 2 7.637 -0.407 -18.633 1 27.59 ? H191 6RX 201 A 1 HETATM 41 H H192 6RX . . . B 2 6.231 -0.979 -18.541 1 27.59 ? H192 6RX 201 A 1 HETATM 42 H H251 6RX . . . B 2 8.462 -1.691 -26.55 1 24.78 ? H251 6RX 201 A 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 227 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 42 #