data_5KDH
#
_model_server_result.job_id            YVrnJ9Q2pks5ejuHErBfTA 
_model_server_result.datetime_utc      '2025-01-25 12:50:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5kdh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":202}' 
#
_entry.id    5KDH 
#
_exptl.entry_id    5KDH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5KDH 
_cell.length_a            42.12 
_cell.length_b            48.56 
_cell.length_c            61.6 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5KDH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 128 n n 
C1 C2 EDO sing 129 n n 
C1 H11 EDO sing 130 n n 
C1 H12 EDO sing 131 n n 
O1 HO1 EDO sing 132 n n 
C2 O2 EDO sing 133 n n 
C2 H21 EDO sing 134 n n 
C2 H22 EDO sing 135 n n 
O2 HO2 EDO sing 136 n n 
#
_atom_sites.entry_id                     5KDH 
_atom_sites.fract_transf_matrix[1][1]    0.023742 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020593 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016234 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 6RX A 1 201 1 6RX LIG . 
C 3 EDO A 1 202 1 EDO EDO . 
D 4 SO4 A 1 203 1 SO4 SO4 . 
E 4 SO4 A 1 204 2 SO4 SO4 . 
F 5 HOH A 1 301 85 HOH HOH . 
F 5 HOH A 2 302 49 HOH HOH . 
F 5 HOH A 3 303 86 HOH HOH . 
F 5 HOH A 4 304 88 HOH HOH . 
F 5 HOH A 5 305 83 HOH HOH . 
F 5 HOH A 6 306 29 HOH HOH . 
F 5 HOH A 7 307 44 HOH HOH . 
F 5 HOH A 8 308 81 HOH HOH . 
F 5 HOH A 9 309 54 HOH HOH . 
F 5 HOH A 10 310 74 HOH HOH . 
F 5 HOH A 11 311 35 HOH HOH . 
F 5 HOH A 12 312 19 HOH HOH . 
F 5 HOH A 13 313 13 HOH HOH . 
F 5 HOH A 14 314 33 HOH HOH . 
F 5 HOH A 15 315 46 HOH HOH . 
F 5 HOH A 16 316 5 HOH HOH . 
F 5 HOH A 17 317 95 HOH HOH . 
F 5 HOH A 18 318 37 HOH HOH . 
F 5 HOH A 19 319 69 HOH HOH . 
F 5 HOH A 20 320 8 HOH HOH . 
F 5 HOH A 21 321 53 HOH HOH . 
F 5 HOH A 22 322 3 HOH HOH . 
F 5 HOH A 23 323 20 HOH HOH . 
F 5 HOH A 24 324 84 HOH HOH . 
F 5 HOH A 25 325 64 HOH HOH . 
F 5 HOH A 26 326 30 HOH HOH . 
F 5 HOH A 27 327 39 HOH HOH . 
F 5 HOH A 28 328 94 HOH HOH . 
F 5 HOH A 29 329 31 HOH HOH . 
F 5 HOH A 30 330 78 HOH HOH . 
F 5 HOH A 31 331 7 HOH HOH . 
F 5 HOH A 32 332 10 HOH HOH . 
F 5 HOH A 33 333 4 HOH HOH . 
F 5 HOH A 34 334 36 HOH HOH . 
F 5 HOH A 35 335 2 HOH HOH . 
F 5 HOH A 36 336 6 HOH HOH . 
F 5 HOH A 37 337 21 HOH HOH . 
F 5 HOH A 38 338 14 HOH HOH . 
F 5 HOH A 39 339 40 HOH HOH . 
F 5 HOH A 40 340 24 HOH HOH . 
F 5 HOH A 41 341 72 HOH HOH . 
F 5 HOH A 42 342 11 HOH HOH . 
F 5 HOH A 43 343 48 HOH HOH . 
F 5 HOH A 44 344 16 HOH HOH . 
F 5 HOH A 45 345 22 HOH HOH . 
F 5 HOH A 46 346 43 HOH HOH . 
F 5 HOH A 47 347 60 HOH HOH . 
F 5 HOH A 48 348 26 HOH HOH . 
F 5 HOH A 49 349 66 HOH HOH . 
F 5 HOH A 50 350 27 HOH HOH . 
F 5 HOH A 51 351 34 HOH HOH . 
F 5 HOH A 52 352 61 HOH HOH . 
F 5 HOH A 53 353 1 HOH HOH . 
F 5 HOH A 54 354 57 HOH HOH . 
F 5 HOH A 55 355 82 HOH HOH . 
F 5 HOH A 56 356 67 HOH HOH . 
F 5 HOH A 57 357 59 HOH HOH . 
F 5 HOH A 58 358 17 HOH HOH . 
F 5 HOH A 59 359 76 HOH HOH . 
F 5 HOH A 60 360 32 HOH HOH . 
F 5 HOH A 61 361 73 HOH HOH . 
F 5 HOH A 62 362 12 HOH HOH . 
F 5 HOH A 63 363 71 HOH HOH . 
F 5 HOH A 64 364 15 HOH HOH . 
F 5 HOH A 65 365 56 HOH HOH . 
F 5 HOH A 66 366 89 HOH HOH . 
F 5 HOH A 67 367 41 HOH HOH . 
F 5 HOH A 68 368 23 HOH HOH . 
F 5 HOH A 69 369 45 HOH HOH . 
F 5 HOH A 70 370 79 HOH HOH . 
F 5 HOH A 71 371 18 HOH HOH . 
F 5 HOH A 72 372 90 HOH HOH . 
F 5 HOH A 73 373 47 HOH HOH . 
F 5 HOH A 74 374 80 HOH HOH . 
F 5 HOH A 75 375 55 HOH HOH . 
F 5 HOH A 76 376 68 HOH HOH . 
F 5 HOH A 77 377 52 HOH HOH . 
F 5 HOH A 78 378 96 HOH HOH . 
F 5 HOH A 79 379 9 HOH HOH . 
F 5 HOH A 80 380 65 HOH HOH . 
F 5 HOH A 81 381 42 HOH HOH . 
F 5 HOH A 82 382 93 HOH HOH . 
F 5 HOH A 83 383 91 HOH HOH . 
F 5 HOH A 84 384 58 HOH HOH . 
F 5 HOH A 85 385 77 HOH HOH . 
F 5 HOH A 86 386 63 HOH HOH . 
F 5 HOH A 87 387 87 HOH HOH . 
F 5 HOH A 88 388 28 HOH HOH . 
F 5 HOH A 89 389 92 HOH HOH . 
F 5 HOH A 90 390 38 HOH HOH . 
F 5 HOH A 91 391 25 HOH HOH . 
F 5 HOH A 92 392 70 HOH HOH . 
F 5 HOH A 93 393 51 HOH HOH . 
F 5 HOH A 94 394 50 HOH HOH . 
F 5 HOH A 95 395 62 HOH HOH . 
F 5 HOH A 96 396 75 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . C 3 14.757 -4.148 8.153 1 23.65 ? C1 EDO 202 A 1 
HETATM 2 O O1 EDO . . . C 3 15.423 -5.21 8.851 1 26.24 ? O1 EDO 202 A 1 
HETATM 3 C C2 EDO . . . C 3 15.285 -4.035 6.727 1 21.46 ? C2 EDO 202 A 1 
HETATM 4 O O2 EDO . . . C 3 14.995 -5.228 6.005 1 18.83 ? O2 EDO 202 A 1 
HETATM 5 H H11 EDO . . . C 3 14.919 -3.205 8.68 1 28.38 ? H11 EDO 202 A 1 
HETATM 6 H H12 EDO . . . C 3 13.682 -4.342 8.131 1 28.38 ? H12 EDO 202 A 1 
HETATM 7 H HO1 EDO . . . C 3 15.079 -5.27 9.752 1 31.49 ? HO1 EDO 202 A 1 
HETATM 8 H H21 EDO . . . C 3 14.82 -3.182 6.229 1 25.75 ? H21 EDO 202 A 1 
HETATM 9 H H22 EDO . . . C 3 16.364 -3.87 6.747 1 25.75 ? H22 EDO 202 A 1 
HETATM 10 H HO2 EDO . . . C 3 15.333 -5.148 5.103 1 22.6 ? HO2 EDO 202 A 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           244 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           10 
#