data_5KDT
#
_model_server_result.job_id            P4QYCNXCjetUWKqUnU_Tpw 
_model_server_result.datetime_utc      '2024-11-08 06:18:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5kdt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":301}' 
#
_entry.id    5KDT 
#
_exptl.entry_id    5KDT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              75.067 
_entity.id                          6 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5KDT 
_cell.length_a            55.325 
_cell.length_b            90.127 
_cell.length_c            123.185 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5KDT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 31 A CYS 31 1_555 A SG CYS 57 A CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
disulf ? disulf2 A SG CYS 38 A CYS 38 1_555 A SG CYS 58 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
disulf ? disulf3 A SG CYS 228 A CYS 228 1_555 A SG CYS 283 A CYS 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf4 B SG CYS 29 B CYS 29 1_555 B SG CYS 63 B CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf5 B SG CYS 45 B CYS 45 1_555 B SG CYS 64 B CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
#
_chem_comp.formula           'C2 H5 N O2' 
_chem_comp.formula_weight    75.067 
_chem_comp.id                GLY 
_chem_comp.mon_nstd_flag     y 
_chem_comp.name              GLYCINE 
_chem_comp.type              'peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA GLY sing 167 n n 
N H GLY sing 168 n n 
N H2 GLY sing 169 n n 
CA C GLY sing 170 n n 
CA HA2 GLY sing 171 n n 
CA HA3 GLY sing 172 n n 
C O GLY doub 173 n n 
C OXT GLY sing 174 n n 
OXT HXT GLY sing 175 n n 
#
_atom_sites.entry_id                     5KDT 
_atom_sites.fract_transf_matrix[1][1]    0.018075 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011095 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008118 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 ACT A 1 301 1 ACT ACT . 
D 4 GLU A 1 302 1 GLU GLU . 
E 5 6RV A 1 303 1 6RV DRG . 
F 6 GLY B 1 301 1 GLY GLY . 
G 7 HOH A 1 401 33 HOH HOH . 
G 7 HOH A 2 402 148 HOH HOH . 
G 7 HOH A 3 403 152 HOH HOH . 
G 7 HOH A 4 404 3 HOH HOH . 
G 7 HOH A 5 405 41 HOH HOH . 
G 7 HOH A 6 406 73 HOH HOH . 
G 7 HOH A 7 407 72 HOH HOH . 
G 7 HOH A 8 408 143 HOH HOH . 
G 7 HOH A 9 409 13 HOH HOH . 
G 7 HOH A 10 410 44 HOH HOH . 
G 7 HOH A 11 411 2 HOH HOH . 
G 7 HOH A 12 412 139 HOH HOH . 
G 7 HOH A 13 413 5 HOH HOH . 
G 7 HOH A 14 414 1 HOH HOH . 
G 7 HOH A 15 415 103 HOH HOH . 
G 7 HOH A 16 416 34 HOH HOH . 
G 7 HOH A 17 417 19 HOH HOH . 
G 7 HOH A 18 418 59 HOH HOH . 
G 7 HOH A 19 419 10 HOH HOH . 
G 7 HOH A 20 420 91 HOH HOH . 
G 7 HOH A 21 421 8 HOH HOH . 
G 7 HOH A 22 422 145 HOH HOH . 
G 7 HOH A 23 423 52 HOH HOH . 
G 7 HOH A 24 424 78 HOH HOH . 
G 7 HOH A 25 425 21 HOH HOH . 
G 7 HOH A 26 426 18 HOH HOH . 
G 7 HOH A 27 427 49 HOH HOH . 
G 7 HOH A 28 428 153 HOH HOH . 
G 7 HOH A 29 429 93 HOH HOH . 
G 7 HOH A 30 430 97 HOH HOH . 
G 7 HOH A 31 431 53 HOH HOH . 
G 7 HOH A 32 432 36 HOH HOH . 
G 7 HOH A 33 433 11 HOH HOH . 
G 7 HOH A 34 434 29 HOH HOH . 
G 7 HOH A 35 435 55 HOH HOH . 
G 7 HOH A 36 436 119 HOH HOH . 
G 7 HOH A 37 437 81 HOH HOH . 
G 7 HOH A 38 438 31 HOH HOH . 
G 7 HOH A 39 439 61 HOH HOH . 
G 7 HOH A 40 440 116 HOH HOH . 
G 7 HOH A 41 441 131 HOH HOH . 
G 7 HOH A 42 442 64 HOH HOH . 
G 7 HOH A 43 443 125 HOH HOH . 
G 7 HOH A 44 444 66 HOH HOH . 
G 7 HOH A 45 445 46 HOH HOH . 
G 7 HOH A 46 446 133 HOH HOH . 
G 7 HOH A 47 447 138 HOH HOH . 
G 7 HOH A 48 448 27 HOH HOH . 
G 7 HOH A 49 449 12 HOH HOH . 
G 7 HOH A 50 450 108 HOH HOH . 
G 7 HOH A 51 451 14 HOH HOH . 
G 7 HOH A 52 452 4 HOH HOH . 
G 7 HOH A 53 453 16 HOH HOH . 
G 7 HOH A 54 454 67 HOH HOH . 
G 7 HOH A 55 455 17 HOH HOH . 
G 7 HOH A 56 456 69 HOH HOH . 
G 7 HOH A 57 457 82 HOH HOH . 
G 7 HOH A 58 458 75 HOH HOH . 
G 7 HOH A 59 459 89 HOH HOH . 
G 7 HOH A 60 460 9 HOH HOH . 
G 7 HOH A 61 461 28 HOH HOH . 
G 7 HOH A 62 462 102 HOH HOH . 
G 7 HOH A 63 463 54 HOH HOH . 
G 7 HOH A 64 464 100 HOH HOH . 
G 7 HOH A 65 465 38 HOH HOH . 
G 7 HOH A 66 466 56 HOH HOH . 
G 7 HOH A 67 467 137 HOH HOH . 
G 7 HOH A 68 468 24 HOH HOH . 
G 7 HOH A 69 469 151 HOH HOH . 
G 7 HOH A 70 470 25 HOH HOH . 
G 7 HOH A 71 471 37 HOH HOH . 
G 7 HOH A 72 472 68 HOH HOH . 
G 7 HOH A 73 473 63 HOH HOH . 
G 7 HOH A 74 474 87 HOH HOH . 
G 7 HOH A 75 475 120 HOH HOH . 
G 7 HOH A 76 476 23 HOH HOH . 
G 7 HOH A 77 477 150 HOH HOH . 
G 7 HOH A 78 478 40 HOH HOH . 
G 7 HOH A 79 479 126 HOH HOH . 
G 7 HOH A 80 480 99 HOH HOH . 
G 7 HOH A 81 481 71 HOH HOH . 
G 7 HOH A 82 482 6 HOH HOH . 
G 7 HOH A 83 483 110 HOH HOH . 
G 7 HOH A 84 484 124 HOH HOH . 
G 7 HOH A 85 485 147 HOH HOH . 
G 7 HOH A 86 486 48 HOH HOH . 
G 7 HOH A 87 487 134 HOH HOH . 
G 7 HOH A 88 488 115 HOH HOH . 
G 7 HOH A 89 489 47 HOH HOH . 
G 7 HOH A 90 490 62 HOH HOH . 
G 7 HOH A 91 491 85 HOH HOH . 
G 7 HOH A 92 492 98 HOH HOH . 
G 7 HOH A 93 493 104 HOH HOH . 
G 7 HOH A 94 494 123 HOH HOH . 
G 7 HOH A 95 495 135 HOH HOH . 
H 7 HOH B 1 401 149 HOH HOH . 
H 7 HOH B 2 402 140 HOH HOH . 
H 7 HOH B 3 403 105 HOH HOH . 
H 7 HOH B 4 404 141 HOH HOH . 
H 7 HOH B 5 405 7 HOH HOH . 
H 7 HOH B 6 406 83 HOH HOH . 
H 7 HOH B 7 407 76 HOH HOH . 
H 7 HOH B 8 408 142 HOH HOH . 
H 7 HOH B 9 409 26 HOH HOH . 
H 7 HOH B 10 410 121 HOH HOH . 
H 7 HOH B 11 411 15 HOH HOH . 
H 7 HOH B 12 412 117 HOH HOH . 
H 7 HOH B 13 413 146 HOH HOH . 
H 7 HOH B 14 414 144 HOH HOH . 
H 7 HOH B 15 415 92 HOH HOH . 
H 7 HOH B 16 416 77 HOH HOH . 
H 7 HOH B 17 417 80 HOH HOH . 
H 7 HOH B 18 418 113 HOH HOH . 
H 7 HOH B 19 419 154 HOH HOH . 
H 7 HOH B 20 420 20 HOH HOH . 
H 7 HOH B 21 421 130 HOH HOH . 
H 7 HOH B 22 422 79 HOH HOH . 
H 7 HOH B 23 423 57 HOH HOH . 
H 7 HOH B 24 424 39 HOH HOH . 
H 7 HOH B 25 425 86 HOH HOH . 
H 7 HOH B 26 426 122 HOH HOH . 
H 7 HOH B 27 427 95 HOH HOH . 
H 7 HOH B 28 428 96 HOH HOH . 
H 7 HOH B 29 429 101 HOH HOH . 
H 7 HOH B 30 430 107 HOH HOH . 
H 7 HOH B 31 431 30 HOH HOH . 
H 7 HOH B 32 432 60 HOH HOH . 
H 7 HOH B 33 433 132 HOH HOH . 
H 7 HOH B 34 434 84 HOH HOH . 
H 7 HOH B 35 435 32 HOH HOH . 
H 7 HOH B 36 436 129 HOH HOH . 
H 7 HOH B 37 437 94 HOH HOH . 
H 7 HOH B 38 438 65 HOH HOH . 
H 7 HOH B 39 439 58 HOH HOH . 
H 7 HOH B 40 440 51 HOH HOH . 
H 7 HOH B 41 441 42 HOH HOH . 
H 7 HOH B 42 442 90 HOH HOH . 
H 7 HOH B 43 443 74 HOH HOH . 
H 7 HOH B 44 444 111 HOH HOH . 
H 7 HOH B 45 445 127 HOH HOH . 
H 7 HOH B 46 446 106 HOH HOH . 
H 7 HOH B 47 447 114 HOH HOH . 
H 7 HOH B 48 448 43 HOH HOH . 
H 7 HOH B 49 449 136 HOH HOH . 
H 7 HOH B 50 450 50 HOH HOH . 
H 7 HOH B 51 451 35 HOH HOH . 
H 7 HOH B 52 452 109 HOH HOH . 
H 7 HOH B 53 453 112 HOH HOH . 
H 7 HOH B 54 454 118 HOH HOH . 
H 7 HOH B 55 455 70 HOH HOH . 
H 7 HOH B 56 456 88 HOH HOH . 
H 7 HOH B 57 457 45 HOH HOH . 
H 7 HOH B 58 458 128 HOH HOH . 
H 7 HOH B 59 459 22 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N GLY . . . F 6 8.96 -11.373 -38.18 1 34.13 ? N GLY 301 B 1 
HETATM 2 C CA GLY . . . F 6 8.858 -10.417 -39.289 1 34.53 ? CA GLY 301 B 1 
HETATM 3 C C GLY . . . F 6 8.52 -9.023 -38.779 1 43.01 ? C GLY 301 B 1 
HETATM 4 O O GLY . . . F 6 8.561 -8.079 -39.577 1 54.5 ? O GLY 301 B 1 
HETATM 5 O OXT GLY . . . F 6 8.159 -8.871 -37.6 1 44.05 ? OXT GLY 301 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           5 
#