data_5KE3 # _model_server_result.job_id NqXwyDM-GCdJItIEE6JIBg _model_server_result.datetime_utc '2025-01-02 16:13:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ke3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 5KE3 # _exptl.entry_id 5KE3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KE3 _cell.length_a 54.3 _cell.length_b 63.342 _cell.length_c 69.187 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KE3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 196 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 385 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id S2 _struct_conn.ptnr2_label_comp_id BME _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id BME _struct_conn.ptnr2_auth_seq_id 502 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.06 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 354 n n S O2 SO4 doub 355 n n S O3 SO4 sing 356 n n S O4 SO4 sing 357 n n # _atom_sites.entry_id 5KE3 _atom_sites.fract_transf_matrix[1][1] 0.018416 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015787 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014454 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6S5 A 1 501 1 6S5 XXX . C 3 BME A 1 502 1 BME BME . D 4 SO4 A 1 503 1 SO4 SO4 . E 4 SO4 A 1 504 2 SO4 SO4 . F 4 SO4 A 1 505 3 SO4 SO4 . G 4 SO4 A 1 506 4 SO4 SO4 . H 5 UNX A 1 507 1001 UNX UNX . I 5 UNX A 1 508 1002 UNX UNX . J 5 UNX A 1 509 1003 UNX UNX . K 5 UNX A 1 510 1004 UNX UNX . L 5 UNX A 1 511 1005 UNX UNX . M 5 UNX A 1 512 1006 UNX UNX . N 5 UNX A 1 513 1007 UNX UNX . O 5 UNX A 1 514 1009 UNX UNX . P 5 UNX A 1 515 1010 UNX UNX . Q 5 UNX A 1 516 1011 UNX UNX . R 6 HOH A 1 601 223 HOH HOH . R 6 HOH A 2 602 240 HOH HOH . R 6 HOH A 3 603 43 HOH HOH . R 6 HOH A 4 604 138 HOH HOH . R 6 HOH A 5 605 241 HOH HOH . R 6 HOH A 6 606 70 HOH HOH . R 6 HOH A 7 607 102 HOH HOH . R 6 HOH A 8 608 84 HOH HOH . R 6 HOH A 9 609 76 HOH HOH . R 6 HOH A 10 610 157 HOH HOH . R 6 HOH A 11 611 83 HOH HOH . R 6 HOH A 12 612 216 HOH HOH . R 6 HOH A 13 613 60 HOH HOH . R 6 HOH A 14 614 45 HOH HOH . R 6 HOH A 15 615 65 HOH HOH . R 6 HOH A 16 616 128 HOH HOH . R 6 HOH A 17 617 210 HOH HOH . R 6 HOH A 18 618 169 HOH HOH . R 6 HOH A 19 619 107 HOH HOH . R 6 HOH A 20 620 81 HOH HOH . R 6 HOH A 21 621 129 HOH HOH . R 6 HOH A 22 622 188 HOH HOH . R 6 HOH A 23 623 9 HOH HOH . R 6 HOH A 24 624 147 HOH HOH . R 6 HOH A 25 625 35 HOH HOH . R 6 HOH A 26 626 78 HOH HOH . R 6 HOH A 27 627 221 HOH HOH . R 6 HOH A 28 628 75 HOH HOH . R 6 HOH A 29 629 228 HOH HOH . R 6 HOH A 30 630 68 HOH HOH . R 6 HOH A 31 631 17 HOH HOH . R 6 HOH A 32 632 25 HOH HOH . R 6 HOH A 33 633 242 HOH HOH . R 6 HOH A 34 634 6 HOH HOH . R 6 HOH A 35 635 110 HOH HOH . R 6 HOH A 36 636 20 HOH HOH . R 6 HOH A 37 637 175 HOH HOH . R 6 HOH A 38 638 4 HOH HOH . R 6 HOH A 39 639 15 HOH HOH . R 6 HOH A 40 640 202 HOH HOH . R 6 HOH A 41 641 136 HOH HOH . R 6 HOH A 42 642 144 HOH HOH . R 6 HOH A 43 643 29 HOH HOH . R 6 HOH A 44 644 204 HOH HOH . R 6 HOH A 45 645 86 HOH HOH . R 6 HOH A 46 646 101 HOH HOH . R 6 HOH A 47 647 87 HOH HOH . R 6 HOH A 48 648 47 HOH HOH . R 6 HOH A 49 649 51 HOH HOH . R 6 HOH A 50 650 125 HOH HOH . R 6 HOH A 51 651 14 HOH HOH . R 6 HOH A 52 652 18 HOH HOH . R 6 HOH A 53 653 237 HOH HOH . R 6 HOH A 54 654 205 HOH HOH . R 6 HOH A 55 655 203 HOH HOH . R 6 HOH A 56 656 211 HOH HOH . R 6 HOH A 57 657 212 HOH HOH . R 6 HOH A 58 658 16 HOH HOH . R 6 HOH A 59 659 46 HOH HOH . R 6 HOH A 60 660 7 HOH HOH . R 6 HOH A 61 661 71 HOH HOH . R 6 HOH A 62 662 2 HOH HOH . R 6 HOH A 63 663 91 HOH HOH . R 6 HOH A 64 664 42 HOH HOH . R 6 HOH A 65 665 48 HOH HOH . R 6 HOH A 66 666 192 HOH HOH . R 6 HOH A 67 667 21 HOH HOH . R 6 HOH A 68 668 96 HOH HOH . R 6 HOH A 69 669 54 HOH HOH . R 6 HOH A 70 670 164 HOH HOH . R 6 HOH A 71 671 152 HOH HOH . R 6 HOH A 72 672 52 HOH HOH . R 6 HOH A 73 673 26 HOH HOH . R 6 HOH A 74 674 10 HOH HOH . R 6 HOH A 75 675 33 HOH HOH . R 6 HOH A 76 676 230 HOH HOH . R 6 HOH A 77 677 3 HOH HOH . R 6 HOH A 78 678 194 HOH HOH . R 6 HOH A 79 679 1 HOH HOH . R 6 HOH A 80 680 120 HOH HOH . R 6 HOH A 81 681 37 HOH HOH . R 6 HOH A 82 682 38 HOH HOH . R 6 HOH A 83 683 11 HOH HOH . R 6 HOH A 84 684 8 HOH HOH . R 6 HOH A 85 685 56 HOH HOH . R 6 HOH A 86 686 66 HOH HOH . R 6 HOH A 87 687 69 HOH HOH . R 6 HOH A 88 688 62 HOH HOH . R 6 HOH A 89 689 74 HOH HOH . R 6 HOH A 90 690 28 HOH HOH . R 6 HOH A 91 691 199 HOH HOH . R 6 HOH A 92 692 22 HOH HOH . R 6 HOH A 93 693 103 HOH HOH . R 6 HOH A 94 694 233 HOH HOH . R 6 HOH A 95 695 12 HOH HOH . R 6 HOH A 96 696 122 HOH HOH . R 6 HOH A 97 697 53 HOH HOH . R 6 HOH A 98 698 109 HOH HOH . R 6 HOH A 99 699 95 HOH HOH . R 6 HOH A 100 700 238 HOH HOH . R 6 HOH A 101 701 191 HOH HOH . R 6 HOH A 102 702 97 HOH HOH . R 6 HOH A 103 703 225 HOH HOH . R 6 HOH A 104 704 130 HOH HOH . R 6 HOH A 105 705 121 HOH HOH . R 6 HOH A 106 706 67 HOH HOH . R 6 HOH A 107 707 196 HOH HOH . R 6 HOH A 108 708 90 HOH HOH . R 6 HOH A 109 709 80 HOH HOH . R 6 HOH A 110 710 206 HOH HOH . R 6 HOH A 111 711 55 HOH HOH . R 6 HOH A 112 712 23 HOH HOH . R 6 HOH A 113 713 82 HOH HOH . R 6 HOH A 114 714 111 HOH HOH . R 6 HOH A 115 715 49 HOH HOH . R 6 HOH A 116 716 198 HOH HOH . R 6 HOH A 117 717 63 HOH HOH . R 6 HOH A 118 718 154 HOH HOH . R 6 HOH A 119 719 39 HOH HOH . R 6 HOH A 120 720 19 HOH HOH . R 6 HOH A 121 721 57 HOH HOH . R 6 HOH A 122 722 72 HOH HOH . R 6 HOH A 123 723 41 HOH HOH . R 6 HOH A 124 724 36 HOH HOH . R 6 HOH A 125 725 59 HOH HOH . R 6 HOH A 126 726 176 HOH HOH . R 6 HOH A 127 727 146 HOH HOH . R 6 HOH A 128 728 141 HOH HOH . R 6 HOH A 129 729 31 HOH HOH . R 6 HOH A 130 730 92 HOH HOH . R 6 HOH A 131 731 40 HOH HOH . R 6 HOH A 132 732 218 HOH HOH . R 6 HOH A 133 733 88 HOH HOH . R 6 HOH A 134 734 229 HOH HOH . R 6 HOH A 135 735 200 HOH HOH . R 6 HOH A 136 736 195 HOH HOH . R 6 HOH A 137 737 117 HOH HOH . R 6 HOH A 138 738 113 HOH HOH . R 6 HOH A 139 739 5 HOH HOH . R 6 HOH A 140 740 112 HOH HOH . R 6 HOH A 141 741 89 HOH HOH . R 6 HOH A 142 742 50 HOH HOH . R 6 HOH A 143 743 94 HOH HOH . R 6 HOH A 144 744 239 HOH HOH . R 6 HOH A 145 745 137 HOH HOH . R 6 HOH A 146 746 219 HOH HOH . R 6 HOH A 147 747 118 HOH HOH . R 6 HOH A 148 748 44 HOH HOH . R 6 HOH A 149 749 58 HOH HOH . R 6 HOH A 150 750 24 HOH HOH . R 6 HOH A 151 751 114 HOH HOH . R 6 HOH A 152 752 13 HOH HOH . R 6 HOH A 153 753 61 HOH HOH . R 6 HOH A 154 754 201 HOH HOH . R 6 HOH A 155 755 32 HOH HOH . R 6 HOH A 156 756 193 HOH HOH . R 6 HOH A 157 757 127 HOH HOH . R 6 HOH A 158 758 85 HOH HOH . R 6 HOH A 159 759 235 HOH HOH . R 6 HOH A 160 760 167 HOH HOH . R 6 HOH A 161 761 173 HOH HOH . R 6 HOH A 162 762 189 HOH HOH . R 6 HOH A 163 763 115 HOH HOH . R 6 HOH A 164 764 208 HOH HOH . R 6 HOH A 165 765 214 HOH HOH . R 6 HOH A 166 766 132 HOH HOH . R 6 HOH A 167 767 139 HOH HOH . R 6 HOH A 168 768 79 HOH HOH . R 6 HOH A 169 769 64 HOH HOH . R 6 HOH A 170 770 98 HOH HOH . R 6 HOH A 171 771 27 HOH HOH . R 6 HOH A 172 772 184 HOH HOH . R 6 HOH A 173 773 227 HOH HOH . R 6 HOH A 174 774 181 HOH HOH . R 6 HOH A 175 775 149 HOH HOH . R 6 HOH A 176 776 220 HOH HOH . R 6 HOH A 177 777 209 HOH HOH . R 6 HOH A 178 778 234 HOH HOH . R 6 HOH A 179 779 236 HOH HOH . R 6 HOH A 180 780 151 HOH HOH . R 6 HOH A 181 781 224 HOH HOH . R 6 HOH A 182 782 232 HOH HOH . R 6 HOH A 183 783 207 HOH HOH . R 6 HOH A 184 784 172 HOH HOH . R 6 HOH A 185 785 77 HOH HOH . R 6 HOH A 186 786 187 HOH HOH . R 6 HOH A 187 787 215 HOH HOH . R 6 HOH A 188 788 213 HOH HOH . R 6 HOH A 189 789 197 HOH HOH . R 6 HOH A 190 790 179 HOH HOH . R 6 HOH A 191 791 222 HOH HOH . R 6 HOH A 192 792 217 HOH HOH . R 6 HOH A 193 793 171 HOH HOH . R 6 HOH A 194 794 226 HOH HOH . R 6 HOH A 195 795 108 HOH HOH . R 6 HOH A 196 796 231 HOH HOH . R 6 HOH A 197 797 186 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . D 4 6.279 39.335 12.776 1 38.91 ? S SO4 503 A 1 HETATM 2 O O1 SO4 . . . D 4 6.994 38.51 11.787 1 38.83 ? O1 SO4 503 A 1 HETATM 3 O O2 SO4 . . . D 4 6.152 40.72 12.27 1 36.14 ? O2 SO4 503 A 1 HETATM 4 O O3 SO4 . . . D 4 4.913 38.852 13.097 1 42.6 ? O3 SO4 503 A 1 HETATM 5 O O4 SO4 . . . D 4 7.052 39.322 14.021 1 41.3 ? O4 SO4 503 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 441 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 5 #