data_5KEF # _model_server_result.job_id L2rW-AjziS9slShE34Z7Cw _model_server_result.datetime_utc '2024-12-22 06:19:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kef # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":203}' # _entry.id 5KEF # _exptl.entry_id 5KEF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 59.044 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KEF _cell.length_a 91.867 _cell.length_b 92.611 _cell.length_c 95.259 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KEF _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 41 A GLU 40 1_555 E ZN ZN . B ZN 201 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc2 A NE2 HIS 45 A HIS 44 1_555 E ZN ZN . B ZN 201 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc3 A NE2 HIS 59 A HIS 58 1_555 C ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? metalc ? metalc4 A NE2 HIS 144 A HIS 143 1_555 D ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc5 C ZN ZN . A ZN 201 7_545 B OE1 GLU 41 B GLU 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? metalc ? metalc6 C ZN ZN . A ZN 201 7_545 B NE2 HIS 45 B HIS 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc7 B NE2 HIS 59 B HIS 58 1_555 E ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? metalc ? metalc8 B OE1 GLU 61 B GLU 60 1_555 E ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? metalc ? metalc9 B NE2 HIS 144 B HIS 143 1_555 F ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? # _chem_comp.formula 'C2 H3 O2 -1' _chem_comp.formula_weight 59.044 _chem_comp.id ACT _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O ACT doub 1 n n C OXT ACT sing 2 n n C CH3 ACT sing 3 n n CH3 H1 ACT sing 4 n n CH3 H2 ACT sing 5 n n CH3 H3 ACT sing 6 n n # _atom_sites.entry_id 5KEF _atom_sites.fract_transf_matrix[1][1] 0.010885 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010798 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010498 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 201 1 ZN ZN . D 2 ZN A 1 202 4 ZN ZN . E 2 ZN B 1 201 2 ZN ZN . F 2 ZN B 1 202 3 ZN ZN . G 3 ACT B 1 203 1 ACT ACT . H 4 HOH A 1 301 48 HOH HOH . H 4 HOH A 2 302 52 HOH HOH . H 4 HOH A 3 303 6 HOH HOH . H 4 HOH A 4 304 3 HOH HOH . H 4 HOH A 5 305 30 HOH HOH . H 4 HOH A 6 306 43 HOH HOH . H 4 HOH A 7 307 37 HOH HOH . H 4 HOH A 8 308 5 HOH HOH . H 4 HOH A 9 309 28 HOH HOH . H 4 HOH A 10 310 29 HOH HOH . H 4 HOH A 11 311 10 HOH HOH . H 4 HOH A 12 312 9 HOH HOH . H 4 HOH A 13 313 11 HOH HOH . H 4 HOH A 14 314 38 HOH HOH . H 4 HOH A 15 315 8 HOH HOH . H 4 HOH A 16 316 2 HOH HOH . H 4 HOH A 17 317 45 HOH HOH . H 4 HOH A 18 318 26 HOH HOH . H 4 HOH A 19 319 51 HOH HOH . H 4 HOH A 20 320 23 HOH HOH . H 4 HOH A 21 321 46 HOH HOH . H 4 HOH A 22 322 4 HOH HOH . H 4 HOH A 23 323 7 HOH HOH . H 4 HOH A 24 324 24 HOH HOH . H 4 HOH A 25 325 49 HOH HOH . H 4 HOH A 26 326 42 HOH HOH . H 4 HOH A 27 327 50 HOH HOH . I 4 HOH B 1 301 1 HOH HOH . I 4 HOH B 2 302 15 HOH HOH . I 4 HOH B 3 303 20 HOH HOH . I 4 HOH B 4 304 36 HOH HOH . I 4 HOH B 5 305 21 HOH HOH . I 4 HOH B 6 306 35 HOH HOH . I 4 HOH B 7 307 13 HOH HOH . I 4 HOH B 8 308 39 HOH HOH . I 4 HOH B 9 309 19 HOH HOH . I 4 HOH B 10 310 32 HOH HOH . I 4 HOH B 11 311 34 HOH HOH . I 4 HOH B 12 312 17 HOH HOH . I 4 HOH B 13 313 22 HOH HOH . I 4 HOH B 14 314 12 HOH HOH . I 4 HOH B 15 315 16 HOH HOH . I 4 HOH B 16 316 25 HOH HOH . I 4 HOH B 17 317 18 HOH HOH . I 4 HOH B 18 318 27 HOH HOH . I 4 HOH B 19 319 53 HOH HOH . I 4 HOH B 20 320 14 HOH HOH . I 4 HOH B 21 321 44 HOH HOH . I 4 HOH B 22 322 33 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ACT . . . G 3 26.646 25.201 24.959 1 87.13 ? C ACT 203 B 1 HETATM 2 O O ACT . . . G 3 27.543 26.102 24.819 1 85.27 ? O ACT 203 B 1 HETATM 3 O OXT ACT . . . G 3 25.391 25.375 24.922 1 86.99 ? OXT ACT 203 B 1 HETATM 4 C CH3 ACT . . . G 3 27.108 23.751 25.197 1 87.12 ? CH3 ACT 203 B 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 220 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 4 #