data_5KF8
#
_model_server_result.job_id            C8_I9uHEqVfy0ryfrKEXHg 
_model_server_result.datetime_utc      '2024-11-24 15:11:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5kf8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":403}' 
#
_entry.id    5KF8 
#
_exptl.entry_id    5KF8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          121 
_cell.angle_gamma         90 
_cell.entry_id            5KF8 
_cell.length_a            119.267 
_cell.length_b            44.406 
_cell.length_c            74.419 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5KF8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 260 n n 
C1 C2 EDO sing 261 n n 
C1 H11 EDO sing 262 n n 
C1 H12 EDO sing 263 n n 
O1 HO1 EDO sing 264 n n 
C2 O2 EDO sing 265 n n 
C2 H21 EDO sing 266 n n 
C2 H22 EDO sing 267 n n 
O2 HO2 EDO sing 268 n n 
#
_atom_sites.entry_id                     5KF8 
_atom_sites.fract_transf_matrix[1][1]    0.008385 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005039 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.022519 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015677 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ACO A 1 401 2 ACO ACO . 
C 3 EDO A 1 402 1 EDO EDO . 
D 3 EDO A 1 403 1 EDO EDO . 
E 4 GCS A 1 404 1 GCS GCS . 
F 5 EP1 A 1 405 1 EP1 EP1 . 
G 6 COA A 1 406 1 COA JH4 . 
H 7 HOH A 1 501 211 HOH HOH . 
H 7 HOH A 2 502 176 HOH HOH . 
H 7 HOH A 3 503 262 HOH HOH . 
H 7 HOH A 4 504 48 HOH HOH . 
H 7 HOH A 5 505 8 HOH HOH . 
H 7 HOH A 6 506 255 HOH HOH . 
H 7 HOH A 7 507 10 HOH HOH . 
H 7 HOH A 8 508 3 HOH HOH . 
H 7 HOH A 9 509 165 HOH HOH . 
H 7 HOH A 10 510 261 HOH HOH . 
H 7 HOH A 11 511 109 HOH HOH . 
H 7 HOH A 12 512 243 HOH HOH . 
H 7 HOH A 13 513 74 HOH HOH . 
H 7 HOH A 14 514 239 HOH HOH . 
H 7 HOH A 15 515 212 HOH HOH . 
H 7 HOH A 16 516 127 HOH HOH . 
H 7 HOH A 17 517 83 HOH HOH . 
H 7 HOH A 18 518 67 HOH HOH . 
H 7 HOH A 19 519 52 HOH HOH . 
H 7 HOH A 20 520 139 HOH HOH . 
H 7 HOH A 21 521 178 HOH HOH . 
H 7 HOH A 22 522 226 HOH HOH . 
H 7 HOH A 23 523 210 HOH HOH . 
H 7 HOH A 24 524 55 HOH HOH . 
H 7 HOH A 25 525 231 HOH HOH . 
H 7 HOH A 26 526 50 HOH HOH . 
H 7 HOH A 27 527 96 HOH HOH . 
H 7 HOH A 28 528 256 HOH HOH . 
H 7 HOH A 29 529 250 HOH HOH . 
H 7 HOH A 30 530 22 HOH HOH . 
H 7 HOH A 31 531 149 HOH HOH . 
H 7 HOH A 32 532 43 HOH HOH . 
H 7 HOH A 33 533 219 HOH HOH . 
H 7 HOH A 34 534 81 HOH HOH . 
H 7 HOH A 35 535 193 HOH HOH . 
H 7 HOH A 36 536 167 HOH HOH . 
H 7 HOH A 37 537 122 HOH HOH . 
H 7 HOH A 38 538 12 HOH HOH . 
H 7 HOH A 39 539 56 HOH HOH . 
H 7 HOH A 40 540 53 HOH HOH . 
H 7 HOH A 41 541 259 HOH HOH . 
H 7 HOH A 42 542 14 HOH HOH . 
H 7 HOH A 43 543 95 HOH HOH . 
H 7 HOH A 44 544 179 HOH HOH . 
H 7 HOH A 45 545 78 HOH HOH . 
H 7 HOH A 46 546 75 HOH HOH . 
H 7 HOH A 47 547 264 HOH HOH . 
H 7 HOH A 48 548 125 HOH HOH . 
H 7 HOH A 49 549 8 HOH HOH . 
H 7 HOH A 50 550 214 HOH HOH . 
H 7 HOH A 51 551 59 HOH HOH . 
H 7 HOH A 52 552 27 HOH HOH . 
H 7 HOH A 53 553 23 HOH HOH . 
H 7 HOH A 54 554 238 HOH HOH . 
H 7 HOH A 55 555 58 HOH HOH . 
H 7 HOH A 56 556 119 HOH HOH . 
H 7 HOH A 57 557 72 HOH HOH . 
H 7 HOH A 58 558 260 HOH HOH . 
H 7 HOH A 59 559 10 HOH HOH . 
H 7 HOH A 60 560 222 HOH HOH . 
H 7 HOH A 61 561 2 HOH HOH . 
H 7 HOH A 62 562 246 HOH HOH . 
H 7 HOH A 63 563 112 HOH HOH . 
H 7 HOH A 64 564 19 HOH HOH . 
H 7 HOH A 65 565 92 HOH HOH . 
H 7 HOH A 66 566 132 HOH HOH . 
H 7 HOH A 67 567 7 HOH HOH . 
H 7 HOH A 68 568 154 HOH HOH . 
H 7 HOH A 69 569 151 HOH HOH . 
H 7 HOH A 70 570 86 HOH HOH . 
H 7 HOH A 71 571 114 HOH HOH . 
H 7 HOH A 72 572 129 HOH HOH . 
H 7 HOH A 73 573 6 HOH HOH . 
H 7 HOH A 74 574 220 HOH HOH . 
H 7 HOH A 75 575 124 HOH HOH . 
H 7 HOH A 76 576 229 HOH HOH . 
H 7 HOH A 77 577 45 HOH HOH . 
H 7 HOH A 78 578 191 HOH HOH . 
H 7 HOH A 79 579 63 HOH HOH . 
H 7 HOH A 80 580 85 HOH HOH . 
H 7 HOH A 81 581 205 HOH HOH . 
H 7 HOH A 82 582 28 HOH HOH . 
H 7 HOH A 83 583 24 HOH HOH . 
H 7 HOH A 84 584 185 HOH HOH . 
H 7 HOH A 85 585 91 HOH HOH . 
H 7 HOH A 86 586 108 HOH HOH . 
H 7 HOH A 87 587 88 HOH HOH . 
H 7 HOH A 88 588 216 HOH HOH . 
H 7 HOH A 89 589 254 HOH HOH . 
H 7 HOH A 90 590 161 HOH HOH . 
H 7 HOH A 91 591 90 HOH HOH . 
H 7 HOH A 92 592 36 HOH HOH . 
H 7 HOH A 93 593 110 HOH HOH . 
H 7 HOH A 94 594 29 HOH HOH . 
H 7 HOH A 95 595 9 HOH HOH . 
H 7 HOH A 96 596 1 HOH HOH . 
H 7 HOH A 97 597 38 HOH HOH . 
H 7 HOH A 98 598 251 HOH HOH . 
H 7 HOH A 99 599 35 HOH HOH . 
H 7 HOH A 100 600 252 HOH HOH . 
H 7 HOH A 101 601 42 HOH HOH . 
H 7 HOH A 102 602 248 HOH HOH . 
H 7 HOH A 103 603 160 HOH HOH . 
H 7 HOH A 104 604 31 HOH HOH . 
H 7 HOH A 105 605 21 HOH HOH . 
H 7 HOH A 106 606 249 HOH HOH . 
H 7 HOH A 107 607 237 HOH HOH . 
H 7 HOH A 108 608 37 HOH HOH . 
H 7 HOH A 109 609 199 HOH HOH . 
H 7 HOH A 110 610 98 HOH HOH . 
H 7 HOH A 111 611 62 HOH HOH . 
H 7 HOH A 112 612 64 HOH HOH . 
H 7 HOH A 113 613 70 HOH HOH . 
H 7 HOH A 114 614 60 HOH HOH . 
H 7 HOH A 115 615 30 HOH HOH . 
H 7 HOH A 116 616 77 HOH HOH . 
H 7 HOH A 117 617 16 HOH HOH . 
H 7 HOH A 118 618 159 HOH HOH . 
H 7 HOH A 119 619 5 HOH HOH . 
H 7 HOH A 120 620 7 HOH HOH . 
H 7 HOH A 121 621 234 HOH HOH . 
H 7 HOH A 122 622 73 HOH HOH . 
H 7 HOH A 123 623 120 HOH HOH . 
H 7 HOH A 124 624 107 HOH HOH . 
H 7 HOH A 125 625 244 HOH HOH . 
H 7 HOH A 126 626 247 HOH HOH . 
H 7 HOH A 127 627 134 HOH HOH . 
H 7 HOH A 128 628 4 HOH HOH . 
H 7 HOH A 129 629 33 HOH HOH . 
H 7 HOH A 130 630 233 HOH HOH . 
H 7 HOH A 131 631 116 HOH HOH . 
H 7 HOH A 132 632 18 HOH HOH . 
H 7 HOH A 133 633 87 HOH HOH . 
H 7 HOH A 134 634 57 HOH HOH . 
H 7 HOH A 135 635 136 HOH HOH . 
H 7 HOH A 136 636 39 HOH HOH . 
H 7 HOH A 137 637 245 HOH HOH . 
H 7 HOH A 138 638 17 HOH HOH . 
H 7 HOH A 139 639 82 HOH HOH . 
H 7 HOH A 140 640 183 HOH HOH . 
H 7 HOH A 141 641 11 HOH HOH . 
H 7 HOH A 142 642 258 HOH HOH . 
H 7 HOH A 143 643 117 HOH HOH . 
H 7 HOH A 144 644 6 HOH HOH . 
H 7 HOH A 145 645 47 HOH HOH . 
H 7 HOH A 146 646 46 HOH HOH . 
H 7 HOH A 147 647 137 HOH HOH . 
H 7 HOH A 148 648 223 HOH HOH . 
H 7 HOH A 149 649 172 HOH HOH . 
H 7 HOH A 150 650 13 HOH HOH . 
H 7 HOH A 151 651 121 HOH HOH . 
H 7 HOH A 152 652 69 HOH HOH . 
H 7 HOH A 153 653 80 HOH HOH . 
H 7 HOH A 154 654 32 HOH HOH . 
H 7 HOH A 155 655 215 HOH HOH . 
H 7 HOH A 156 656 94 HOH HOH . 
H 7 HOH A 157 657 1 HOH HOH . 
H 7 HOH A 158 658 51 HOH HOH . 
H 7 HOH A 159 659 5 HOH HOH . 
H 7 HOH A 160 660 241 HOH HOH . 
H 7 HOH A 161 661 225 HOH HOH . 
H 7 HOH A 162 662 227 HOH HOH . 
H 7 HOH A 163 663 207 HOH HOH . 
H 7 HOH A 164 664 235 HOH HOH . 
H 7 HOH A 165 665 224 HOH HOH . 
H 7 HOH A 166 666 104 HOH HOH . 
H 7 HOH A 167 667 190 HOH HOH . 
H 7 HOH A 168 668 232 HOH HOH . 
H 7 HOH A 169 669 34 HOH HOH . 
H 7 HOH A 170 670 44 HOH HOH . 
H 7 HOH A 171 671 54 HOH HOH . 
H 7 HOH A 172 672 253 HOH HOH . 
H 7 HOH A 173 673 153 HOH HOH . 
H 7 HOH A 174 674 208 HOH HOH . 
H 7 HOH A 175 675 189 HOH HOH . 
H 7 HOH A 176 676 79 HOH HOH . 
H 7 HOH A 177 677 26 HOH HOH . 
H 7 HOH A 178 678 236 HOH HOH . 
H 7 HOH A 179 679 218 HOH HOH . 
H 7 HOH A 180 680 213 HOH HOH . 
H 7 HOH A 181 681 144 HOH HOH . 
H 7 HOH A 182 682 197 HOH HOH . 
H 7 HOH A 183 683 115 HOH HOH . 
H 7 HOH A 184 684 230 HOH HOH . 
H 7 HOH A 185 685 221 HOH HOH . 
H 7 HOH A 186 686 180 HOH HOH . 
H 7 HOH A 187 687 203 HOH HOH . 
H 7 HOH A 188 688 257 HOH HOH . 
H 7 HOH A 189 689 68 HOH HOH . 
H 7 HOH A 190 690 206 HOH HOH . 
H 7 HOH A 191 691 242 HOH HOH . 
H 7 HOH A 192 692 209 HOH HOH . 
H 7 HOH A 193 693 265 HOH HOH . 
H 7 HOH A 194 694 105 HOH HOH . 
H 7 HOH A 195 695 4 HOH HOH . 
H 7 HOH A 196 696 240 HOH HOH . 
H 7 HOH A 197 697 100 HOH HOH . 
H 7 HOH A 198 698 157 HOH HOH . 
H 7 HOH A 199 699 188 HOH HOH . 
H 7 HOH A 200 700 263 HOH HOH . 
H 7 HOH A 201 701 118 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . D 3 -5.27 15.607 30.078 1 22.5 ? C1 EDO 403 A 1 
HETATM 2 O O1 EDO . . . D 3 -6.272 16.605 30.356 1 28.52 ? O1 EDO 403 A 1 
HETATM 3 C C2 EDO . . . D 3 -5.934 14.319 30.427 1 20.35 ? C2 EDO 403 A 1 
HETATM 4 O O2 EDO . . . D 3 -6.324 14.294 31.818 1 18.13 ? O2 EDO 403 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           4 
#