data_5KF8 # _model_server_result.job_id UVUmNaJPgfBirKwgUeHOPQ _model_server_result.datetime_utc '2024-11-24 14:36:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kf8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":405}' # _entry.id 5KF8 # _exptl.entry_id 5KF8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 252.331 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-[4-(2-HYDROXYETHYL)PIPERAZIN-1-YL]PROPANE-1-SULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 121 _cell.angle_gamma 90 _cell.entry_id 5KF8 _cell.length_a 119.267 _cell.length_b 44.406 _cell.length_c 74.419 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KF8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C9 H20 N2 O4 S' _chem_comp.formula_weight 252.331 _chem_comp.id EP1 _chem_comp.mon_nstd_flag . _chem_comp.name '3-[4-(2-HYDROXYETHYL)PIPERAZIN-1-YL]PROPANE-1-SULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2S S EP1 doub 269 n n S O3S EP1 doub 270 n n S O1S EP1 sing 271 n n S C11 EP1 sing 272 n n O1S H1S EP1 sing 273 n n C11 C10 EP1 sing 274 n n C11 H111 EP1 sing 275 n n C11 H112 EP1 sing 276 n n C10 C9 EP1 sing 277 n n C10 H101 EP1 sing 278 n n C10 H102 EP1 sing 279 n n C9 N1 EP1 sing 280 n n C9 H91 EP1 sing 281 n n C9 H92 EP1 sing 282 n n N1 C2 EP1 sing 283 n n N1 C6 EP1 sing 284 n n C2 C3 EP1 sing 285 n n C2 H21 EP1 sing 286 n n C2 H22 EP1 sing 287 n n C3 N4 EP1 sing 288 n n C3 H31 EP1 sing 289 n n C3 H32 EP1 sing 290 n n N4 C5 EP1 sing 291 n n N4 C7 EP1 sing 292 n n C5 C6 EP1 sing 293 n n C5 H51 EP1 sing 294 n n C5 H52 EP1 sing 295 n n C6 H61 EP1 sing 296 n n C6 H62 EP1 sing 297 n n C7 C8 EP1 sing 298 n n C7 H71 EP1 sing 299 n n C7 H72 EP1 sing 300 n n C8 O8 EP1 sing 301 n n C8 H81 EP1 sing 302 n n C8 H82 EP1 sing 303 n n O8 HO8 EP1 sing 304 n n # _atom_sites.entry_id 5KF8 _atom_sites.fract_transf_matrix[1][1] 0.008385 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005039 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022519 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015677 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACO A 1 401 2 ACO ACO . C 3 EDO A 1 402 1 EDO EDO . D 3 EDO A 1 403 1 EDO EDO . E 4 GCS A 1 404 1 GCS GCS . F 5 EP1 A 1 405 1 EP1 EP1 . G 6 COA A 1 406 1 COA JH4 . H 7 HOH A 1 501 211 HOH HOH . H 7 HOH A 2 502 176 HOH HOH . H 7 HOH A 3 503 262 HOH HOH . H 7 HOH A 4 504 48 HOH HOH . H 7 HOH A 5 505 8 HOH HOH . H 7 HOH A 6 506 255 HOH HOH . H 7 HOH A 7 507 10 HOH HOH . H 7 HOH A 8 508 3 HOH HOH . H 7 HOH A 9 509 165 HOH HOH . H 7 HOH A 10 510 261 HOH HOH . H 7 HOH A 11 511 109 HOH HOH . H 7 HOH A 12 512 243 HOH HOH . H 7 HOH A 13 513 74 HOH HOH . H 7 HOH A 14 514 239 HOH HOH . H 7 HOH A 15 515 212 HOH HOH . H 7 HOH A 16 516 127 HOH HOH . H 7 HOH A 17 517 83 HOH HOH . H 7 HOH A 18 518 67 HOH HOH . H 7 HOH A 19 519 52 HOH HOH . H 7 HOH A 20 520 139 HOH HOH . H 7 HOH A 21 521 178 HOH HOH . H 7 HOH A 22 522 226 HOH HOH . H 7 HOH A 23 523 210 HOH HOH . H 7 HOH A 24 524 55 HOH HOH . H 7 HOH A 25 525 231 HOH HOH . H 7 HOH A 26 526 50 HOH HOH . H 7 HOH A 27 527 96 HOH HOH . H 7 HOH A 28 528 256 HOH HOH . H 7 HOH A 29 529 250 HOH HOH . H 7 HOH A 30 530 22 HOH HOH . H 7 HOH A 31 531 149 HOH HOH . H 7 HOH A 32 532 43 HOH HOH . H 7 HOH A 33 533 219 HOH HOH . H 7 HOH A 34 534 81 HOH HOH . H 7 HOH A 35 535 193 HOH HOH . H 7 HOH A 36 536 167 HOH HOH . H 7 HOH A 37 537 122 HOH HOH . H 7 HOH A 38 538 12 HOH HOH . H 7 HOH A 39 539 56 HOH HOH . H 7 HOH A 40 540 53 HOH HOH . H 7 HOH A 41 541 259 HOH HOH . H 7 HOH A 42 542 14 HOH HOH . H 7 HOH A 43 543 95 HOH HOH . H 7 HOH A 44 544 179 HOH HOH . H 7 HOH A 45 545 78 HOH HOH . H 7 HOH A 46 546 75 HOH HOH . H 7 HOH A 47 547 264 HOH HOH . H 7 HOH A 48 548 125 HOH HOH . H 7 HOH A 49 549 8 HOH HOH . H 7 HOH A 50 550 214 HOH HOH . H 7 HOH A 51 551 59 HOH HOH . H 7 HOH A 52 552 27 HOH HOH . H 7 HOH A 53 553 23 HOH HOH . H 7 HOH A 54 554 238 HOH HOH . H 7 HOH A 55 555 58 HOH HOH . H 7 HOH A 56 556 119 HOH HOH . H 7 HOH A 57 557 72 HOH HOH . H 7 HOH A 58 558 260 HOH HOH . H 7 HOH A 59 559 10 HOH HOH . H 7 HOH A 60 560 222 HOH HOH . H 7 HOH A 61 561 2 HOH HOH . H 7 HOH A 62 562 246 HOH HOH . H 7 HOH A 63 563 112 HOH HOH . H 7 HOH A 64 564 19 HOH HOH . H 7 HOH A 65 565 92 HOH HOH . H 7 HOH A 66 566 132 HOH HOH . H 7 HOH A 67 567 7 HOH HOH . H 7 HOH A 68 568 154 HOH HOH . H 7 HOH A 69 569 151 HOH HOH . H 7 HOH A 70 570 86 HOH HOH . H 7 HOH A 71 571 114 HOH HOH . H 7 HOH A 72 572 129 HOH HOH . H 7 HOH A 73 573 6 HOH HOH . H 7 HOH A 74 574 220 HOH HOH . H 7 HOH A 75 575 124 HOH HOH . H 7 HOH A 76 576 229 HOH HOH . H 7 HOH A 77 577 45 HOH HOH . H 7 HOH A 78 578 191 HOH HOH . H 7 HOH A 79 579 63 HOH HOH . H 7 HOH A 80 580 85 HOH HOH . H 7 HOH A 81 581 205 HOH HOH . H 7 HOH A 82 582 28 HOH HOH . H 7 HOH A 83 583 24 HOH HOH . H 7 HOH A 84 584 185 HOH HOH . H 7 HOH A 85 585 91 HOH HOH . H 7 HOH A 86 586 108 HOH HOH . H 7 HOH A 87 587 88 HOH HOH . H 7 HOH A 88 588 216 HOH HOH . H 7 HOH A 89 589 254 HOH HOH . H 7 HOH A 90 590 161 HOH HOH . H 7 HOH A 91 591 90 HOH HOH . H 7 HOH A 92 592 36 HOH HOH . H 7 HOH A 93 593 110 HOH HOH . H 7 HOH A 94 594 29 HOH HOH . H 7 HOH A 95 595 9 HOH HOH . H 7 HOH A 96 596 1 HOH HOH . H 7 HOH A 97 597 38 HOH HOH . H 7 HOH A 98 598 251 HOH HOH . H 7 HOH A 99 599 35 HOH HOH . H 7 HOH A 100 600 252 HOH HOH . H 7 HOH A 101 601 42 HOH HOH . H 7 HOH A 102 602 248 HOH HOH . H 7 HOH A 103 603 160 HOH HOH . H 7 HOH A 104 604 31 HOH HOH . H 7 HOH A 105 605 21 HOH HOH . H 7 HOH A 106 606 249 HOH HOH . H 7 HOH A 107 607 237 HOH HOH . H 7 HOH A 108 608 37 HOH HOH . H 7 HOH A 109 609 199 HOH HOH . H 7 HOH A 110 610 98 HOH HOH . H 7 HOH A 111 611 62 HOH HOH . H 7 HOH A 112 612 64 HOH HOH . H 7 HOH A 113 613 70 HOH HOH . H 7 HOH A 114 614 60 HOH HOH . H 7 HOH A 115 615 30 HOH HOH . H 7 HOH A 116 616 77 HOH HOH . H 7 HOH A 117 617 16 HOH HOH . H 7 HOH A 118 618 159 HOH HOH . H 7 HOH A 119 619 5 HOH HOH . H 7 HOH A 120 620 7 HOH HOH . H 7 HOH A 121 621 234 HOH HOH . H 7 HOH A 122 622 73 HOH HOH . H 7 HOH A 123 623 120 HOH HOH . H 7 HOH A 124 624 107 HOH HOH . H 7 HOH A 125 625 244 HOH HOH . H 7 HOH A 126 626 247 HOH HOH . H 7 HOH A 127 627 134 HOH HOH . H 7 HOH A 128 628 4 HOH HOH . H 7 HOH A 129 629 33 HOH HOH . H 7 HOH A 130 630 233 HOH HOH . H 7 HOH A 131 631 116 HOH HOH . H 7 HOH A 132 632 18 HOH HOH . H 7 HOH A 133 633 87 HOH HOH . H 7 HOH A 134 634 57 HOH HOH . H 7 HOH A 135 635 136 HOH HOH . H 7 HOH A 136 636 39 HOH HOH . H 7 HOH A 137 637 245 HOH HOH . H 7 HOH A 138 638 17 HOH HOH . H 7 HOH A 139 639 82 HOH HOH . H 7 HOH A 140 640 183 HOH HOH . H 7 HOH A 141 641 11 HOH HOH . H 7 HOH A 142 642 258 HOH HOH . H 7 HOH A 143 643 117 HOH HOH . H 7 HOH A 144 644 6 HOH HOH . H 7 HOH A 145 645 47 HOH HOH . H 7 HOH A 146 646 46 HOH HOH . H 7 HOH A 147 647 137 HOH HOH . H 7 HOH A 148 648 223 HOH HOH . H 7 HOH A 149 649 172 HOH HOH . H 7 HOH A 150 650 13 HOH HOH . H 7 HOH A 151 651 121 HOH HOH . H 7 HOH A 152 652 69 HOH HOH . H 7 HOH A 153 653 80 HOH HOH . H 7 HOH A 154 654 32 HOH HOH . H 7 HOH A 155 655 215 HOH HOH . H 7 HOH A 156 656 94 HOH HOH . H 7 HOH A 157 657 1 HOH HOH . H 7 HOH A 158 658 51 HOH HOH . H 7 HOH A 159 659 5 HOH HOH . H 7 HOH A 160 660 241 HOH HOH . H 7 HOH A 161 661 225 HOH HOH . H 7 HOH A 162 662 227 HOH HOH . H 7 HOH A 163 663 207 HOH HOH . H 7 HOH A 164 664 235 HOH HOH . H 7 HOH A 165 665 224 HOH HOH . H 7 HOH A 166 666 104 HOH HOH . H 7 HOH A 167 667 190 HOH HOH . H 7 HOH A 168 668 232 HOH HOH . H 7 HOH A 169 669 34 HOH HOH . H 7 HOH A 170 670 44 HOH HOH . H 7 HOH A 171 671 54 HOH HOH . H 7 HOH A 172 672 253 HOH HOH . H 7 HOH A 173 673 153 HOH HOH . H 7 HOH A 174 674 208 HOH HOH . H 7 HOH A 175 675 189 HOH HOH . H 7 HOH A 176 676 79 HOH HOH . H 7 HOH A 177 677 26 HOH HOH . H 7 HOH A 178 678 236 HOH HOH . H 7 HOH A 179 679 218 HOH HOH . H 7 HOH A 180 680 213 HOH HOH . H 7 HOH A 181 681 144 HOH HOH . H 7 HOH A 182 682 197 HOH HOH . H 7 HOH A 183 683 115 HOH HOH . H 7 HOH A 184 684 230 HOH HOH . H 7 HOH A 185 685 221 HOH HOH . H 7 HOH A 186 686 180 HOH HOH . H 7 HOH A 187 687 203 HOH HOH . H 7 HOH A 188 688 257 HOH HOH . H 7 HOH A 189 689 68 HOH HOH . H 7 HOH A 190 690 206 HOH HOH . H 7 HOH A 191 691 242 HOH HOH . H 7 HOH A 192 692 209 HOH HOH . H 7 HOH A 193 693 265 HOH HOH . H 7 HOH A 194 694 105 HOH HOH . H 7 HOH A 195 695 4 HOH HOH . H 7 HOH A 196 696 240 HOH HOH . H 7 HOH A 197 697 100 HOH HOH . H 7 HOH A 198 698 157 HOH HOH . H 7 HOH A 199 699 188 HOH HOH . H 7 HOH A 200 700 263 HOH HOH . H 7 HOH A 201 701 118 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2S EP1 . . . F 5 16.351 15.687 20.82 1 28.76 ? O2S EP1 405 A 1 HETATM 2 S S EP1 . . . F 5 16.251 17.019 20.306 1 28.11 ? S EP1 405 A 1 HETATM 3 O O3S EP1 . . . F 5 14.95 17.46 20.718 1 33.78 ? O3S EP1 405 A 1 HETATM 4 O O1S EP1 . . . F 5 17.369 18.033 20.9 1 37.33 ? O1S EP1 405 A 1 HETATM 5 C C11 EP1 . . . F 5 16.513 17.131 18.672 1 31.64 ? C11 EP1 405 A 1 HETATM 6 C C10 EP1 . . . F 5 15.157 17.211 18.013 1 31.51 ? C10 EP1 405 A 1 HETATM 7 C C9 EP1 . . . F 5 15.408 17.222 16.518 1 34.88 ? C9 EP1 405 A 1 HETATM 8 N N1 EP1 . . . F 5 14.15 17.018 15.772 1 32.57 ? N1 EP1 405 A 1 HETATM 9 C C2 EP1 . . . F 5 12.869 16.916 16.526 1 31.75 ? C2 EP1 405 A 1 HETATM 10 C C3 EP1 . . . F 5 11.702 16.494 15.636 1 33.17 ? C3 EP1 405 A 1 HETATM 11 N N4 EP1 . . . F 5 11.676 17.31 14.382 1 37.93 ? N4 EP1 405 A 1 HETATM 12 C C5 EP1 . . . F 5 12.977 17.693 13.767 1 35.2 ? C5 EP1 405 A 1 HETATM 13 C C6 EP1 . . . F 5 14.124 18.01 14.714 1 31.4 ? C6 EP1 405 A 1 HETATM 14 C C7 EP1 . . . F 5 10.687 16.811 13.411 1 31.15 ? C7 EP1 405 A 1 HETATM 15 C C8 EP1 . . . F 5 10.863 17.312 11.984 1 27.71 ? C8 EP1 405 A 1 HETATM 16 O O8 EP1 . . . F 5 11.536 16.319 11.225 1 20.19 ? O8 EP1 405 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 16 #