data_5KGD
#
_model_server_result.job_id            Eg1yHGBK6qogOBgMnG3q0g 
_model_server_result.datetime_utc      '2024-10-16 21:32:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5kgd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":412}' 
#
_entry.id    5KGD 
#
_exptl.entry_id    5KGD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    19 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5KGD 
_cell.length_a            97.585 
_cell.length_b            97.585 
_cell.length_c            80.962 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5KGD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
? 2 Q N N 
? 2 R N N 
? 2 S N N 
? 2 T N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 109 n n 
C1 C2 EDO sing 110 n n 
C1 H11 EDO sing 111 n n 
C1 H12 EDO sing 112 n n 
O1 HO1 EDO sing 113 n n 
C2 O2 EDO sing 114 n n 
C2 H21 EDO sing 115 n n 
C2 H22 EDO sing 116 n n 
O2 HO2 EDO sing 117 n n 
#
_atom_sites.entry_id                     5KGD 
_atom_sites.fract_transf_matrix[1][1]    0.010247 
_atom_sites.fract_transf_matrix[1][2]    0.005916 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011833 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012351 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 EDO A 1 401 1 EDO EDO . 
C 2 EDO A 1 402 2 EDO EDO . 
D 2 EDO A 1 403 3 EDO EDO . 
E 2 EDO A 1 404 4 EDO EDO . 
F 2 EDO A 1 405 5 EDO EDO . 
G 2 EDO A 1 406 6 EDO EDO . 
H 2 EDO A 1 407 7 EDO EDO . 
I 2 EDO A 1 408 8 EDO EDO . 
J 2 EDO A 1 409 9 EDO EDO . 
K 2 EDO A 1 410 10 EDO EDO . 
L 2 EDO A 1 411 11 EDO EDO . 
M 2 EDO A 1 412 12 EDO EDO . 
N 2 EDO A 1 413 13 EDO EDO . 
O 2 EDO A 1 414 14 EDO EDO . 
P 2 EDO A 1 415 15 EDO EDO . 
Q 2 EDO A 1 416 16 EDO EDO . 
R 2 EDO A 1 417 17 EDO EDO . 
S 2 EDO A 1 418 19 EDO EDO . 
T 2 EDO A 1 419 20 EDO EDO . 
U 3 6SL A 1 420 1 6SL INH . 
V 4 SO4 A 1 421 1 SO4 SO4 . 
W 4 SO4 A 1 422 2 SO4 SO4 . 
X 5 HOH A 1 501 20 HOH HOH . 
X 5 HOH A 2 502 95 HOH HOH . 
X 5 HOH A 3 503 121 HOH HOH . 
X 5 HOH A 4 504 28 HOH HOH . 
X 5 HOH A 5 505 91 HOH HOH . 
X 5 HOH A 6 506 124 HOH HOH . 
X 5 HOH A 7 507 112 HOH HOH . 
X 5 HOH A 8 508 93 HOH HOH . 
X 5 HOH A 9 509 70 HOH HOH . 
X 5 HOH A 10 510 39 HOH HOH . 
X 5 HOH A 11 511 2 HOH HOH . 
X 5 HOH A 12 512 7 HOH HOH . 
X 5 HOH A 13 513 34 HOH HOH . 
X 5 HOH A 14 514 36 HOH HOH . 
X 5 HOH A 15 515 26 HOH HOH . 
X 5 HOH A 16 516 6 HOH HOH . 
X 5 HOH A 17 517 100 HOH HOH . 
X 5 HOH A 18 518 13 HOH HOH . 
X 5 HOH A 19 519 8 HOH HOH . 
X 5 HOH A 20 520 128 HOH HOH . 
X 5 HOH A 21 521 21 HOH HOH . 
X 5 HOH A 22 522 90 HOH HOH . 
X 5 HOH A 23 523 56 HOH HOH . 
X 5 HOH A 24 524 125 HOH HOH . 
X 5 HOH A 25 525 40 HOH HOH . 
X 5 HOH A 26 526 58 HOH HOH . 
X 5 HOH A 27 527 65 HOH HOH . 
X 5 HOH A 28 528 35 HOH HOH . 
X 5 HOH A 29 529 55 HOH HOH . 
X 5 HOH A 30 530 80 HOH HOH . 
X 5 HOH A 31 531 29 HOH HOH . 
X 5 HOH A 32 532 108 HOH HOH . 
X 5 HOH A 33 533 27 HOH HOH . 
X 5 HOH A 34 534 75 HOH HOH . 
X 5 HOH A 35 535 87 HOH HOH . 
X 5 HOH A 36 536 105 HOH HOH . 
X 5 HOH A 37 537 82 HOH HOH . 
X 5 HOH A 38 538 32 HOH HOH . 
X 5 HOH A 39 539 119 HOH HOH . 
X 5 HOH A 40 540 37 HOH HOH . 
X 5 HOH A 41 541 98 HOH HOH . 
X 5 HOH A 42 542 4 HOH HOH . 
X 5 HOH A 43 543 84 HOH HOH . 
X 5 HOH A 44 544 61 HOH HOH . 
X 5 HOH A 45 545 111 HOH HOH . 
X 5 HOH A 46 546 101 HOH HOH . 
X 5 HOH A 47 547 68 HOH HOH . 
X 5 HOH A 48 548 78 HOH HOH . 
X 5 HOH A 49 549 51 HOH HOH . 
X 5 HOH A 50 550 47 HOH HOH . 
X 5 HOH A 51 551 15 HOH HOH . 
X 5 HOH A 52 552 96 HOH HOH . 
X 5 HOH A 53 553 118 HOH HOH . 
X 5 HOH A 54 554 89 HOH HOH . 
X 5 HOH A 55 555 85 HOH HOH . 
X 5 HOH A 56 556 1 HOH HOH . 
X 5 HOH A 57 557 9 HOH HOH . 
X 5 HOH A 58 558 69 HOH HOH . 
X 5 HOH A 59 559 64 HOH HOH . 
X 5 HOH A 60 560 106 HOH HOH . 
X 5 HOH A 61 561 11 HOH HOH . 
X 5 HOH A 62 562 31 HOH HOH . 
X 5 HOH A 63 563 30 HOH HOH . 
X 5 HOH A 64 564 109 HOH HOH . 
X 5 HOH A 65 565 23 HOH HOH . 
X 5 HOH A 66 566 22 HOH HOH . 
X 5 HOH A 67 567 83 HOH HOH . 
X 5 HOH A 68 568 24 HOH HOH . 
X 5 HOH A 69 569 53 HOH HOH . 
X 5 HOH A 70 570 45 HOH HOH . 
X 5 HOH A 71 571 43 HOH HOH . 
X 5 HOH A 72 572 72 HOH HOH . 
X 5 HOH A 73 573 115 HOH HOH . 
X 5 HOH A 74 574 3 HOH HOH . 
X 5 HOH A 75 575 99 HOH HOH . 
X 5 HOH A 76 576 73 HOH HOH . 
X 5 HOH A 77 577 49 HOH HOH . 
X 5 HOH A 78 578 97 HOH HOH . 
X 5 HOH A 79 579 107 HOH HOH . 
X 5 HOH A 80 580 12 HOH HOH . 
X 5 HOH A 81 581 63 HOH HOH . 
X 5 HOH A 82 582 17 HOH HOH . 
X 5 HOH A 83 583 50 HOH HOH . 
X 5 HOH A 84 584 116 HOH HOH . 
X 5 HOH A 85 585 57 HOH HOH . 
X 5 HOH A 86 586 52 HOH HOH . 
X 5 HOH A 87 587 18 HOH HOH . 
X 5 HOH A 88 588 103 HOH HOH . 
X 5 HOH A 89 589 104 HOH HOH . 
X 5 HOH A 90 590 88 HOH HOH . 
X 5 HOH A 91 591 92 HOH HOH . 
X 5 HOH A 92 592 38 HOH HOH . 
X 5 HOH A 93 593 5 HOH HOH . 
X 5 HOH A 94 594 79 HOH HOH . 
X 5 HOH A 95 595 76 HOH HOH . 
X 5 HOH A 96 596 41 HOH HOH . 
X 5 HOH A 97 597 122 HOH HOH . 
X 5 HOH A 98 598 10 HOH HOH . 
X 5 HOH A 99 599 60 HOH HOH . 
X 5 HOH A 100 600 117 HOH HOH . 
X 5 HOH A 101 601 62 HOH HOH . 
X 5 HOH A 102 602 74 HOH HOH . 
X 5 HOH A 103 603 33 HOH HOH . 
X 5 HOH A 104 604 127 HOH HOH . 
X 5 HOH A 105 605 25 HOH HOH . 
X 5 HOH A 106 606 113 HOH HOH . 
X 5 HOH A 107 607 16 HOH HOH . 
X 5 HOH A 108 608 46 HOH HOH . 
X 5 HOH A 109 609 110 HOH HOH . 
X 5 HOH A 110 610 102 HOH HOH . 
X 5 HOH A 111 611 77 HOH HOH . 
X 5 HOH A 112 612 81 HOH HOH . 
X 5 HOH A 113 613 42 HOH HOH . 
X 5 HOH A 114 614 67 HOH HOH . 
X 5 HOH A 115 615 114 HOH HOH . 
X 5 HOH A 116 616 86 HOH HOH . 
X 5 HOH A 117 617 66 HOH HOH . 
X 5 HOH A 118 618 126 HOH HOH . 
X 5 HOH A 119 619 59 HOH HOH . 
X 5 HOH A 120 620 94 HOH HOH . 
X 5 HOH A 121 621 19 HOH HOH . 
X 5 HOH A 122 622 71 HOH HOH . 
X 5 HOH A 123 623 123 HOH HOH . 
X 5 HOH A 124 624 14 HOH HOH . 
X 5 HOH A 125 625 120 HOH HOH . 
X 5 HOH A 126 626 48 HOH HOH . 
X 5 HOH A 127 627 54 HOH HOH . 
X 5 HOH A 128 628 44 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . M 2 -6.827 63.819 -3.85 1 75.04 ? C1 EDO 412 A 1 
HETATM 2 O O1 EDO . . . M 2 -5.723 64.108 -3.008 1 75.74 ? O1 EDO 412 A 1 
HETATM 3 C C2 EDO . . . M 2 -6.363 63.775 -5.319 1 74.95 ? C2 EDO 412 A 1 
HETATM 4 O O2 EDO . . . M 2 -5.999 62.449 -5.65 1 74.34 ? O2 EDO 412 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           278 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#