data_5KGE
#
_model_server_result.job_id            uouVt-xzr3NDCBq3a5dlbQ 
_model_server_result.datetime_utc      '2024-12-02 11:50:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5kge 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":408}' 
#
_entry.id    5KGE 
#
_exptl.entry_id    5KGE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    15 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5KGE 
_cell.length_a            96.86 
_cell.length_b            96.86 
_cell.length_c            80.783 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5KGE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 105 n n 
C1 C2 EDO sing 106 n n 
C1 H11 EDO sing 107 n n 
C1 H12 EDO sing 108 n n 
O1 HO1 EDO sing 109 n n 
C2 O2 EDO sing 110 n n 
C2 H21 EDO sing 111 n n 
C2 H22 EDO sing 112 n n 
O2 HO2 EDO sing 113 n n 
#
_atom_sites.entry_id                     5KGE 
_atom_sites.fract_transf_matrix[1][1]    0.010324 
_atom_sites.fract_transf_matrix[1][2]    0.005961 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011921 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012379 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 EDO A 1 401 1 EDO EDO . 
C 2 EDO A 1 402 3 EDO EDO . 
D 2 EDO A 1 403 4 EDO EDO . 
E 2 EDO A 1 404 5 EDO EDO . 
F 2 EDO A 1 405 6 EDO EDO . 
G 2 EDO A 1 406 7 EDO EDO . 
H 2 EDO A 1 407 8 EDO EDO . 
I 2 EDO A 1 408 9 EDO EDO . 
J 2 EDO A 1 409 12 EDO EDO . 
K 2 EDO A 1 410 15 EDO EDO . 
L 2 EDO A 1 411 16 EDO EDO . 
M 2 EDO A 1 412 17 EDO EDO . 
N 2 EDO A 1 413 18 EDO EDO . 
O 2 EDO A 1 414 19 EDO EDO . 
P 2 EDO A 1 415 20 EDO EDO . 
Q 3 6SN A 1 416 1 6SN INH . 
R 4 SO4 A 1 417 1 SO4 SO4 . 
S 4 SO4 A 1 418 2 SO4 SO4 . 
T 5 HOH A 1 501 18 HOH HOH . 
T 5 HOH A 2 502 19 HOH HOH . 
T 5 HOH A 3 503 10 HOH HOH . 
T 5 HOH A 4 504 25 HOH HOH . 
T 5 HOH A 5 505 1 HOH HOH . 
T 5 HOH A 6 506 12 HOH HOH . 
T 5 HOH A 7 507 26 HOH HOH . 
T 5 HOH A 8 508 55 HOH HOH . 
T 5 HOH A 9 509 16 HOH HOH . 
T 5 HOH A 10 510 45 HOH HOH . 
T 5 HOH A 11 511 11 HOH HOH . 
T 5 HOH A 12 512 51 HOH HOH . 
T 5 HOH A 13 513 37 HOH HOH . 
T 5 HOH A 14 514 6 HOH HOH . 
T 5 HOH A 15 515 28 HOH HOH . 
T 5 HOH A 16 516 39 HOH HOH . 
T 5 HOH A 17 517 47 HOH HOH . 
T 5 HOH A 18 518 3 HOH HOH . 
T 5 HOH A 19 519 4 HOH HOH . 
T 5 HOH A 20 520 8 HOH HOH . 
T 5 HOH A 21 521 23 HOH HOH . 
T 5 HOH A 22 522 41 HOH HOH . 
T 5 HOH A 23 523 5 HOH HOH . 
T 5 HOH A 24 524 36 HOH HOH . 
T 5 HOH A 25 525 24 HOH HOH . 
T 5 HOH A 26 526 44 HOH HOH . 
T 5 HOH A 27 527 17 HOH HOH . 
T 5 HOH A 28 528 52 HOH HOH . 
T 5 HOH A 29 529 27 HOH HOH . 
T 5 HOH A 30 530 48 HOH HOH . 
T 5 HOH A 31 531 20 HOH HOH . 
T 5 HOH A 32 532 2 HOH HOH . 
T 5 HOH A 33 533 35 HOH HOH . 
T 5 HOH A 34 534 56 HOH HOH . 
T 5 HOH A 35 535 40 HOH HOH . 
T 5 HOH A 36 536 43 HOH HOH . 
T 5 HOH A 37 537 54 HOH HOH . 
T 5 HOH A 38 538 33 HOH HOH . 
T 5 HOH A 39 539 13 HOH HOH . 
T 5 HOH A 40 540 32 HOH HOH . 
T 5 HOH A 41 541 9 HOH HOH . 
T 5 HOH A 42 542 22 HOH HOH . 
T 5 HOH A 43 543 15 HOH HOH . 
T 5 HOH A 44 544 14 HOH HOH . 
T 5 HOH A 45 545 42 HOH HOH . 
T 5 HOH A 46 546 53 HOH HOH . 
T 5 HOH A 47 547 34 HOH HOH . 
T 5 HOH A 48 548 7 HOH HOH . 
T 5 HOH A 49 549 38 HOH HOH . 
T 5 HOH A 50 550 29 HOH HOH . 
T 5 HOH A 51 551 31 HOH HOH . 
T 5 HOH A 52 552 46 HOH HOH . 
T 5 HOH A 53 553 50 HOH HOH . 
T 5 HOH A 54 554 49 HOH HOH . 
T 5 HOH A 55 555 30 HOH HOH . 
T 5 HOH A 56 556 21 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . I 2 14.012 -20.577 -3.706 1 74.53 ? C1 EDO 408 A 1 
HETATM 2 O O1 EDO . . . I 2 14.222 -19.325 -3.063 1 74.89 ? O1 EDO 408 A 1 
HETATM 3 C C2 EDO . . . I 2 15.274 -21.014 -4.501 1 74.12 ? C2 EDO 408 A 1 
HETATM 4 O O2 EDO . . . I 2 15.401 -20.269 -5.708 1 73.55 ? O2 EDO 408 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           330 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#