data_5KGG
#
_model_server_result.job_id            jaxFDal9ch15lD1VVLdcmQ 
_model_server_result.datetime_utc      '2024-10-16 21:31:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5kgg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":413}' 
#
_entry.id    5KGG 
#
_exptl.entry_id    5KGG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    21 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5KGG 
_cell.length_a            96.446 
_cell.length_b            96.446 
_cell.length_c            81.615 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5KGG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
? 3 M N N 
? 3 N N N 
? 3 O N N 
? 3 P N N 
? 3 Q N N 
? 3 R N N 
? 3 S N N 
? 3 T N N 
? 3 U N N 
? 3 V N N 
? 3 W N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 108 n n 
C1 C2 EDO sing 109 n n 
C1 H11 EDO sing 110 n n 
C1 H12 EDO sing 111 n n 
O1 HO1 EDO sing 112 n n 
C2 O2 EDO sing 113 n n 
C2 H21 EDO sing 114 n n 
C2 H22 EDO sing 115 n n 
O2 HO2 EDO sing 116 n n 
#
_atom_sites.entry_id                     5KGG 
_atom_sites.fract_transf_matrix[1][1]    0.010368 
_atom_sites.fract_transf_matrix[1][2]    0.005986 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011973 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012253 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CL A 1 401 1 CL CL . 
C 3 EDO A 1 402 1 EDO EDO . 
D 3 EDO A 1 403 2 EDO EDO . 
E 3 EDO A 1 404 3 EDO EDO . 
F 3 EDO A 1 405 4 EDO EDO . 
G 3 EDO A 1 406 5 EDO EDO . 
H 3 EDO A 1 407 6 EDO EDO . 
I 3 EDO A 1 408 7 EDO EDO . 
J 3 EDO A 1 409 8 EDO EDO . 
K 3 EDO A 1 410 9 EDO EDO . 
L 3 EDO A 1 411 10 EDO EDO . 
M 3 EDO A 1 412 11 EDO EDO . 
N 3 EDO A 1 413 12 EDO EDO . 
O 3 EDO A 1 414 13 EDO EDO . 
P 3 EDO A 1 415 14 EDO EDO . 
Q 3 EDO A 1 416 15 EDO EDO . 
R 3 EDO A 1 417 16 EDO EDO . 
S 3 EDO A 1 418 17 EDO EDO . 
T 3 EDO A 1 419 18 EDO EDO . 
U 3 EDO A 1 420 19 EDO EDO . 
V 3 EDO A 1 421 20 EDO EDO . 
W 3 EDO A 1 422 21 EDO EDO . 
X 4 6SO A 1 423 1 6SO INH . 
Y 5 SO4 A 1 424 1 SO4 SO4 . 
Z 5 SO4 A 1 425 2 SO4 SO4 . 
AA 6 HOH A 1 501 193 HOH HOH . 
AA 6 HOH A 2 502 196 HOH HOH . 
AA 6 HOH A 3 503 191 HOH HOH . 
AA 6 HOH A 4 504 51 HOH HOH . 
AA 6 HOH A 5 505 154 HOH HOH . 
AA 6 HOH A 6 506 187 HOH HOH . 
AA 6 HOH A 7 507 157 HOH HOH . 
AA 6 HOH A 8 508 159 HOH HOH . 
AA 6 HOH A 9 509 160 HOH HOH . 
AA 6 HOH A 10 510 65 HOH HOH . 
AA 6 HOH A 11 511 31 HOH HOH . 
AA 6 HOH A 12 512 23 HOH HOH . 
AA 6 HOH A 13 513 161 HOH HOH . 
AA 6 HOH A 14 514 109 HOH HOH . 
AA 6 HOH A 15 515 2 HOH HOH . 
AA 6 HOH A 16 516 35 HOH HOH . 
AA 6 HOH A 17 517 152 HOH HOH . 
AA 6 HOH A 18 518 222 HOH HOH . 
AA 6 HOH A 19 519 80 HOH HOH . 
AA 6 HOH A 20 520 151 HOH HOH . 
AA 6 HOH A 21 521 156 HOH HOH . 
AA 6 HOH A 22 522 139 HOH HOH . 
AA 6 HOH A 23 523 54 HOH HOH . 
AA 6 HOH A 24 524 212 HOH HOH . 
AA 6 HOH A 25 525 11 HOH HOH . 
AA 6 HOH A 26 526 42 HOH HOH . 
AA 6 HOH A 27 527 172 HOH HOH . 
AA 6 HOH A 28 528 79 HOH HOH . 
AA 6 HOH A 29 529 111 HOH HOH . 
AA 6 HOH A 30 530 53 HOH HOH . 
AA 6 HOH A 31 531 27 HOH HOH . 
AA 6 HOH A 32 532 207 HOH HOH . 
AA 6 HOH A 33 533 45 HOH HOH . 
AA 6 HOH A 34 534 198 HOH HOH . 
AA 6 HOH A 35 535 19 HOH HOH . 
AA 6 HOH A 36 536 88 HOH HOH . 
AA 6 HOH A 37 537 16 HOH HOH . 
AA 6 HOH A 38 538 155 HOH HOH . 
AA 6 HOH A 39 539 220 HOH HOH . 
AA 6 HOH A 40 540 197 HOH HOH . 
AA 6 HOH A 41 541 120 HOH HOH . 
AA 6 HOH A 42 542 70 HOH HOH . 
AA 6 HOH A 43 543 213 HOH HOH . 
AA 6 HOH A 44 544 39 HOH HOH . 
AA 6 HOH A 45 545 44 HOH HOH . 
AA 6 HOH A 46 546 209 HOH HOH . 
AA 6 HOH A 47 547 47 HOH HOH . 
AA 6 HOH A 48 548 52 HOH HOH . 
AA 6 HOH A 49 549 167 HOH HOH . 
AA 6 HOH A 50 550 61 HOH HOH . 
AA 6 HOH A 51 551 162 HOH HOH . 
AA 6 HOH A 52 552 175 HOH HOH . 
AA 6 HOH A 53 553 6 HOH HOH . 
AA 6 HOH A 54 554 15 HOH HOH . 
AA 6 HOH A 55 555 141 HOH HOH . 
AA 6 HOH A 56 556 67 HOH HOH . 
AA 6 HOH A 57 557 117 HOH HOH . 
AA 6 HOH A 58 558 150 HOH HOH . 
AA 6 HOH A 59 559 214 HOH HOH . 
AA 6 HOH A 60 560 113 HOH HOH . 
AA 6 HOH A 61 561 118 HOH HOH . 
AA 6 HOH A 62 562 62 HOH HOH . 
AA 6 HOH A 63 563 21 HOH HOH . 
AA 6 HOH A 64 564 101 HOH HOH . 
AA 6 HOH A 65 565 210 HOH HOH . 
AA 6 HOH A 66 566 56 HOH HOH . 
AA 6 HOH A 67 567 99 HOH HOH . 
AA 6 HOH A 68 568 69 HOH HOH . 
AA 6 HOH A 69 569 94 HOH HOH . 
AA 6 HOH A 70 570 43 HOH HOH . 
AA 6 HOH A 71 571 223 HOH HOH . 
AA 6 HOH A 72 572 176 HOH HOH . 
AA 6 HOH A 73 573 153 HOH HOH . 
AA 6 HOH A 74 574 192 HOH HOH . 
AA 6 HOH A 75 575 179 HOH HOH . 
AA 6 HOH A 76 576 221 HOH HOH . 
AA 6 HOH A 77 577 85 HOH HOH . 
AA 6 HOH A 78 578 218 HOH HOH . 
AA 6 HOH A 79 579 68 HOH HOH . 
AA 6 HOH A 80 580 22 HOH HOH . 
AA 6 HOH A 81 581 4 HOH HOH . 
AA 6 HOH A 82 582 90 HOH HOH . 
AA 6 HOH A 83 583 58 HOH HOH . 
AA 6 HOH A 84 584 14 HOH HOH . 
AA 6 HOH A 85 585 137 HOH HOH . 
AA 6 HOH A 86 586 166 HOH HOH . 
AA 6 HOH A 87 587 114 HOH HOH . 
AA 6 HOH A 88 588 98 HOH HOH . 
AA 6 HOH A 89 589 204 HOH HOH . 
AA 6 HOH A 90 590 163 HOH HOH . 
AA 6 HOH A 91 591 129 HOH HOH . 
AA 6 HOH A 92 592 125 HOH HOH . 
AA 6 HOH A 93 593 201 HOH HOH . 
AA 6 HOH A 94 594 18 HOH HOH . 
AA 6 HOH A 95 595 158 HOH HOH . 
AA 6 HOH A 96 596 10 HOH HOH . 
AA 6 HOH A 97 597 29 HOH HOH . 
AA 6 HOH A 98 598 82 HOH HOH . 
AA 6 HOH A 99 599 59 HOH HOH . 
AA 6 HOH A 100 600 7 HOH HOH . 
AA 6 HOH A 101 601 105 HOH HOH . 
AA 6 HOH A 102 602 72 HOH HOH . 
AA 6 HOH A 103 603 73 HOH HOH . 
AA 6 HOH A 104 604 171 HOH HOH . 
AA 6 HOH A 105 605 3 HOH HOH . 
AA 6 HOH A 106 606 64 HOH HOH . 
AA 6 HOH A 107 607 147 HOH HOH . 
AA 6 HOH A 108 608 1 HOH HOH . 
AA 6 HOH A 109 609 48 HOH HOH . 
AA 6 HOH A 110 610 96 HOH HOH . 
AA 6 HOH A 111 611 208 HOH HOH . 
AA 6 HOH A 112 612 183 HOH HOH . 
AA 6 HOH A 113 613 20 HOH HOH . 
AA 6 HOH A 114 614 148 HOH HOH . 
AA 6 HOH A 115 615 66 HOH HOH . 
AA 6 HOH A 116 616 203 HOH HOH . 
AA 6 HOH A 117 617 186 HOH HOH . 
AA 6 HOH A 118 618 71 HOH HOH . 
AA 6 HOH A 119 619 123 HOH HOH . 
AA 6 HOH A 120 620 57 HOH HOH . 
AA 6 HOH A 121 621 41 HOH HOH . 
AA 6 HOH A 122 622 205 HOH HOH . 
AA 6 HOH A 123 623 46 HOH HOH . 
AA 6 HOH A 124 624 25 HOH HOH . 
AA 6 HOH A 125 625 124 HOH HOH . 
AA 6 HOH A 126 626 49 HOH HOH . 
AA 6 HOH A 127 627 188 HOH HOH . 
AA 6 HOH A 128 628 165 HOH HOH . 
AA 6 HOH A 129 629 121 HOH HOH . 
AA 6 HOH A 130 630 92 HOH HOH . 
AA 6 HOH A 131 631 13 HOH HOH . 
AA 6 HOH A 132 632 130 HOH HOH . 
AA 6 HOH A 133 633 40 HOH HOH . 
AA 6 HOH A 134 634 8 HOH HOH . 
AA 6 HOH A 135 635 34 HOH HOH . 
AA 6 HOH A 136 636 30 HOH HOH . 
AA 6 HOH A 137 637 9 HOH HOH . 
AA 6 HOH A 138 638 116 HOH HOH . 
AA 6 HOH A 139 639 133 HOH HOH . 
AA 6 HOH A 140 640 202 HOH HOH . 
AA 6 HOH A 141 641 93 HOH HOH . 
AA 6 HOH A 142 642 104 HOH HOH . 
AA 6 HOH A 143 643 5 HOH HOH . 
AA 6 HOH A 144 644 185 HOH HOH . 
AA 6 HOH A 145 645 112 HOH HOH . 
AA 6 HOH A 146 646 108 HOH HOH . 
AA 6 HOH A 147 647 199 HOH HOH . 
AA 6 HOH A 148 648 177 HOH HOH . 
AA 6 HOH A 149 649 138 HOH HOH . 
AA 6 HOH A 150 650 164 HOH HOH . 
AA 6 HOH A 151 651 83 HOH HOH . 
AA 6 HOH A 152 652 131 HOH HOH . 
AA 6 HOH A 153 653 103 HOH HOH . 
AA 6 HOH A 154 654 143 HOH HOH . 
AA 6 HOH A 155 655 74 HOH HOH . 
AA 6 HOH A 156 656 37 HOH HOH . 
AA 6 HOH A 157 657 91 HOH HOH . 
AA 6 HOH A 158 658 36 HOH HOH . 
AA 6 HOH A 159 659 173 HOH HOH . 
AA 6 HOH A 160 660 28 HOH HOH . 
AA 6 HOH A 161 661 149 HOH HOH . 
AA 6 HOH A 162 662 136 HOH HOH . 
AA 6 HOH A 163 663 77 HOH HOH . 
AA 6 HOH A 164 664 24 HOH HOH . 
AA 6 HOH A 165 665 55 HOH HOH . 
AA 6 HOH A 166 666 17 HOH HOH . 
AA 6 HOH A 167 667 135 HOH HOH . 
AA 6 HOH A 168 668 106 HOH HOH . 
AA 6 HOH A 169 669 144 HOH HOH . 
AA 6 HOH A 170 670 189 HOH HOH . 
AA 6 HOH A 171 671 32 HOH HOH . 
AA 6 HOH A 172 672 33 HOH HOH . 
AA 6 HOH A 173 673 122 HOH HOH . 
AA 6 HOH A 174 674 181 HOH HOH . 
AA 6 HOH A 175 675 206 HOH HOH . 
AA 6 HOH A 176 676 195 HOH HOH . 
AA 6 HOH A 177 677 12 HOH HOH . 
AA 6 HOH A 178 678 190 HOH HOH . 
AA 6 HOH A 179 679 184 HOH HOH . 
AA 6 HOH A 180 680 60 HOH HOH . 
AA 6 HOH A 181 681 140 HOH HOH . 
AA 6 HOH A 182 682 102 HOH HOH . 
AA 6 HOH A 183 683 168 HOH HOH . 
AA 6 HOH A 184 684 110 HOH HOH . 
AA 6 HOH A 185 685 86 HOH HOH . 
AA 6 HOH A 186 686 50 HOH HOH . 
AA 6 HOH A 187 687 87 HOH HOH . 
AA 6 HOH A 188 688 169 HOH HOH . 
AA 6 HOH A 189 689 142 HOH HOH . 
AA 6 HOH A 190 690 126 HOH HOH . 
AA 6 HOH A 191 691 200 HOH HOH . 
AA 6 HOH A 192 692 76 HOH HOH . 
AA 6 HOH A 193 693 146 HOH HOH . 
AA 6 HOH A 194 694 97 HOH HOH . 
AA 6 HOH A 195 695 134 HOH HOH . 
AA 6 HOH A 196 696 107 HOH HOH . 
AA 6 HOH A 197 697 84 HOH HOH . 
AA 6 HOH A 198 698 119 HOH HOH . 
AA 6 HOH A 199 699 180 HOH HOH . 
AA 6 HOH A 200 700 219 HOH HOH . 
AA 6 HOH A 201 701 211 HOH HOH . 
AA 6 HOH A 202 702 194 HOH HOH . 
AA 6 HOH A 203 703 75 HOH HOH . 
AA 6 HOH A 204 704 100 HOH HOH . 
AA 6 HOH A 205 705 89 HOH HOH . 
AA 6 HOH A 206 706 115 HOH HOH . 
AA 6 HOH A 207 707 178 HOH HOH . 
AA 6 HOH A 208 708 26 HOH HOH . 
AA 6 HOH A 209 709 217 HOH HOH . 
AA 6 HOH A 210 710 38 HOH HOH . 
AA 6 HOH A 211 711 145 HOH HOH . 
AA 6 HOH A 212 712 95 HOH HOH . 
AA 6 HOH A 213 713 81 HOH HOH . 
AA 6 HOH A 214 714 78 HOH HOH . 
AA 6 HOH A 215 715 127 HOH HOH . 
AA 6 HOH A 216 716 216 HOH HOH . 
AA 6 HOH A 217 717 182 HOH HOH . 
AA 6 HOH A 218 718 170 HOH HOH . 
AA 6 HOH A 219 719 174 HOH HOH . 
AA 6 HOH A 220 720 215 HOH HOH . 
AA 6 HOH A 221 721 63 HOH HOH . 
AA 6 HOH A 222 722 128 HOH HOH . 
AA 6 HOH A 223 723 224 HOH HOH . 
AA 6 HOH A 224 724 132 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . N 3 -55.217 -20.659 -4.211 1 61.4 ? C1 EDO 413 A 1 
HETATM 2 O O1 EDO . . . N 3 -54.153 -20.359 -3.333 1 62.98 ? O1 EDO 413 A 1 
HETATM 3 C C2 EDO . . . N 3 -54.691 -20.736 -5.656 1 60.38 ? C2 EDO 413 A 1 
HETATM 4 O O2 EDO . . . N 3 -54.288 -22.066 -5.935 1 58.23 ? O2 EDO 413 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           283 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#