data_5KGJ # _model_server_result.job_id s-JR4AxauVTkPLwi1BfZrg _model_server_result.datetime_utc '2024-11-30 20:17:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kgj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5KGJ # _exptl.entry_id 5KGJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 120.81 _cell.angle_gamma 90 _cell.entry_id 5KGJ _cell.length_a 119.076 _cell.length_b 43.84 _cell.length_c 74.169 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KGJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 161 n y N1A C6A COA doub 162 n y C2A N3A COA doub 163 n y C2A H2A COA sing 164 n n N3A C4A COA sing 165 n y C4A C5A COA doub 166 n y C4A N9A COA sing 167 n y C5A C6A COA sing 168 n y C5A N7A COA sing 169 n y C6A N6A COA sing 170 n n N6A H61A COA sing 171 n n N6A H62A COA sing 172 n n N7A C8A COA doub 173 n y C8A N9A COA sing 174 n y C8A H8A COA sing 175 n n N9A C1B COA sing 176 n n C1B C2B COA sing 177 n n C1B O4B COA sing 178 n n C1B H1B COA sing 179 n n C2B O2B COA sing 180 n n C2B C3B COA sing 181 n n C2B H2B COA sing 182 n n O2B HO2A COA sing 183 n n C3B O3B COA sing 184 n n C3B C4B COA sing 185 n n C3B H3B COA sing 186 n n O3B P3B COA sing 187 n n P3B O7A COA doub 188 n n P3B O8A COA sing 189 n n P3B O9A COA sing 190 n n O8A HOA8 COA sing 191 n n O9A HOA9 COA sing 192 n n C4B O4B COA sing 193 n n C4B C5B COA sing 194 n n C4B H4B COA sing 195 n n C5B O5B COA sing 196 n n C5B H51A COA sing 197 n n C5B H52A COA sing 198 n n O5B P1A COA sing 199 n n P1A O1A COA doub 200 n n P1A O2A COA sing 201 n n P1A O3A COA sing 202 n n O2A HOA2 COA sing 203 n n O3A P2A COA sing 204 n n P2A O4A COA doub 205 n n P2A O5A COA sing 206 n n P2A O6A COA sing 207 n n O5A HOA5 COA sing 208 n n O6A CCP COA sing 209 n n CBP CCP COA sing 210 n n CBP CDP COA sing 211 n n CBP CEP COA sing 212 n n CBP CAP COA sing 213 n n CCP H121 COA sing 214 n n CCP H122 COA sing 215 n n CDP H131 COA sing 216 n n CDP H132 COA sing 217 n n CDP H133 COA sing 218 n n CEP H141 COA sing 219 n n CEP H142 COA sing 220 n n CEP H143 COA sing 221 n n CAP OAP COA sing 222 n n CAP C9P COA sing 223 n n CAP H10 COA sing 224 n n OAP HO1 COA sing 225 n n C9P O9P COA doub 226 n n C9P N8P COA sing 227 n n N8P C7P COA sing 228 n n N8P HN8 COA sing 229 n n C7P C6P COA sing 230 n n C7P H71 COA sing 231 n n C7P H72 COA sing 232 n n C6P C5P COA sing 233 n n C6P H61 COA sing 234 n n C6P H62 COA sing 235 n n C5P O5P COA doub 236 n n C5P N4P COA sing 237 n n N4P C3P COA sing 238 n n N4P HN4 COA sing 239 n n C3P C2P COA sing 240 n n C3P H31 COA sing 241 n n C3P H32 COA sing 242 n n C2P S1P COA sing 243 n n C2P H21 COA sing 244 n n C2P H22 COA sing 245 n n S1P HS1 COA sing 246 n n # _atom_sites.entry_id 5KGJ _atom_sites.fract_transf_matrix[1][1] 0.008398 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005009 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02281 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015699 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 COA A 1 401 1 COA C0F . C 3 X6X A 1 402 401 X6X X6X . D 4 ACO A 1 403 2 ACO ACO . E 5 EDO A 1 404 1 EDO EDO . F 5 EDO A 1 405 2 EDO EDO . G 5 EDO A 1 406 1 EDO EDO . H 6 EP1 A 1 407 1 EP1 EP1 . I 7 HOH A 1 501 249 HOH HOH . I 7 HOH A 2 502 176 HOH HOH . I 7 HOH A 3 503 267 HOH HOH . I 7 HOH A 4 504 48 HOH HOH . I 7 HOH A 5 505 244 HOH HOH . I 7 HOH A 6 506 10 HOH HOH . I 7 HOH A 7 507 125 HOH HOH . I 7 HOH A 8 508 165 HOH HOH . I 7 HOH A 9 509 270 HOH HOH . I 7 HOH A 10 510 217 HOH HOH . I 7 HOH A 11 511 78 HOH HOH . I 7 HOH A 12 512 260 HOH HOH . I 7 HOH A 13 513 122 HOH HOH . I 7 HOH A 14 514 179 HOH HOH . I 7 HOH A 15 515 221 HOH HOH . I 7 HOH A 16 516 74 HOH HOH . I 7 HOH A 17 517 210 HOH HOH . I 7 HOH A 18 518 139 HOH HOH . I 7 HOH A 19 519 268 HOH HOH . I 7 HOH A 20 520 252 HOH HOH . I 7 HOH A 21 521 238 HOH HOH . I 7 HOH A 22 522 119 HOH HOH . I 7 HOH A 23 523 52 HOH HOH . I 7 HOH A 24 524 83 HOH HOH . I 7 HOH A 25 525 27 HOH HOH . I 7 HOH A 26 526 124 HOH HOH . I 7 HOH A 27 527 22 HOH HOH . I 7 HOH A 28 528 231 HOH HOH . I 7 HOH A 29 529 55 HOH HOH . I 7 HOH A 30 530 273 HOH HOH . I 7 HOH A 31 531 262 HOH HOH . I 7 HOH A 32 532 91 HOH HOH . I 7 HOH A 33 533 96 HOH HOH . I 7 HOH A 34 534 24 HOH HOH . I 7 HOH A 35 535 127 HOH HOH . I 7 HOH A 36 536 132 HOH HOH . I 7 HOH A 37 537 50 HOH HOH . I 7 HOH A 38 538 72 HOH HOH . I 7 HOH A 39 539 56 HOH HOH . I 7 HOH A 40 540 81 HOH HOH . I 7 HOH A 41 541 114 HOH HOH . I 7 HOH A 42 542 251 HOH HOH . I 7 HOH A 43 543 253 HOH HOH . I 7 HOH A 44 544 58 HOH HOH . I 7 HOH A 45 545 241 HOH HOH . I 7 HOH A 46 546 126 HOH HOH . I 7 HOH A 47 547 53 HOH HOH . I 7 HOH A 48 548 7 HOH HOH . I 7 HOH A 49 549 255 HOH HOH . I 7 HOH A 50 550 269 HOH HOH . I 7 HOH A 51 551 14 HOH HOH . I 7 HOH A 52 552 108 HOH HOH . I 7 HOH A 53 553 19 HOH HOH . I 7 HOH A 54 554 28 HOH HOH . I 7 HOH A 55 555 43 HOH HOH . I 7 HOH A 56 556 8 HOH HOH . I 7 HOH A 57 557 23 HOH HOH . I 7 HOH A 58 558 63 HOH HOH . I 7 HOH A 59 559 21 HOH HOH . I 7 HOH A 60 560 45 HOH HOH . I 7 HOH A 61 561 129 HOH HOH . I 7 HOH A 62 562 261 HOH HOH . I 7 HOH A 63 563 109 HOH HOH . I 7 HOH A 64 564 161 HOH HOH . I 7 HOH A 65 565 242 HOH HOH . I 7 HOH A 66 566 6 HOH HOH . I 7 HOH A 67 567 16 HOH HOH . I 7 HOH A 68 568 75 HOH HOH . I 7 HOH A 69 569 59 HOH HOH . I 7 HOH A 70 570 86 HOH HOH . I 7 HOH A 71 571 248 HOH HOH . I 7 HOH A 72 572 265 HOH HOH . I 7 HOH A 73 573 258 HOH HOH . I 7 HOH A 74 574 36 HOH HOH . I 7 HOH A 75 575 30 HOH HOH . I 7 HOH A 76 576 12 HOH HOH . I 7 HOH A 77 577 5 HOH HOH . I 7 HOH A 78 578 256 HOH HOH . I 7 HOH A 79 579 229 HOH HOH . I 7 HOH A 80 580 236 HOH HOH . I 7 HOH A 81 581 134 HOH HOH . I 7 HOH A 82 582 92 HOH HOH . I 7 HOH A 83 583 240 HOH HOH . I 7 HOH A 84 584 232 HOH HOH . I 7 HOH A 85 585 1 HOH HOH . I 7 HOH A 86 586 185 HOH HOH . I 7 HOH A 87 587 4 HOH HOH . I 7 HOH A 88 588 9 HOH HOH . I 7 HOH A 89 589 90 HOH HOH . I 7 HOH A 90 590 191 HOH HOH . I 7 HOH A 91 591 29 HOH HOH . I 7 HOH A 92 592 17 HOH HOH . I 7 HOH A 93 593 95 HOH HOH . I 7 HOH A 94 594 271 HOH HOH . I 7 HOH A 95 595 47 HOH HOH . I 7 HOH A 96 596 84 HOH HOH . I 7 HOH A 97 597 243 HOH HOH . I 7 HOH A 98 598 60 HOH HOH . I 7 HOH A 99 599 39 HOH HOH . I 7 HOH A 100 600 31 HOH HOH . I 7 HOH A 101 601 259 HOH HOH . I 7 HOH A 102 602 38 HOH HOH . I 7 HOH A 103 603 33 HOH HOH . I 7 HOH A 104 604 35 HOH HOH . I 7 HOH A 105 605 140 HOH HOH . I 7 HOH A 106 606 207 HOH HOH . I 7 HOH A 107 607 199 HOH HOH . I 7 HOH A 108 608 136 HOH HOH . I 7 HOH A 109 609 98 HOH HOH . I 7 HOH A 110 610 70 HOH HOH . I 7 HOH A 111 611 235 HOH HOH . I 7 HOH A 112 612 62 HOH HOH . I 7 HOH A 113 613 73 HOH HOH . I 7 HOH A 114 614 116 HOH HOH . I 7 HOH A 115 615 64 HOH HOH . I 7 HOH A 116 616 152 HOH HOH . I 7 HOH A 117 617 151 HOH HOH . I 7 HOH A 118 618 160 HOH HOH . I 7 HOH A 119 619 208 HOH HOH . I 7 HOH A 120 620 87 HOH HOH . I 7 HOH A 121 621 212 HOH HOH . I 7 HOH A 122 622 263 HOH HOH . I 7 HOH A 123 623 215 HOH HOH . I 7 HOH A 124 624 18 HOH HOH . I 7 HOH A 125 625 11 HOH HOH . I 7 HOH A 126 626 211 HOH HOH . I 7 HOH A 127 627 219 HOH HOH . I 7 HOH A 128 628 77 HOH HOH . I 7 HOH A 129 629 13 HOH HOH . I 7 HOH A 130 630 94 HOH HOH . I 7 HOH A 131 631 237 HOH HOH . I 7 HOH A 132 632 220 HOH HOH . I 7 HOH A 133 633 34 HOH HOH . I 7 HOH A 134 634 130 HOH HOH . I 7 HOH A 135 635 57 HOH HOH . I 7 HOH A 136 636 46 HOH HOH . I 7 HOH A 137 637 227 HOH HOH . I 7 HOH A 138 638 69 HOH HOH . I 7 HOH A 139 639 245 HOH HOH . I 7 HOH A 140 640 264 HOH HOH . I 7 HOH A 141 641 233 HOH HOH . I 7 HOH A 142 642 51 HOH HOH . I 7 HOH A 143 643 32 HOH HOH . I 7 HOH A 144 644 213 HOH HOH . I 7 HOH A 145 645 224 HOH HOH . I 7 HOH A 146 646 226 HOH HOH . I 7 HOH A 147 647 230 HOH HOH . I 7 HOH A 148 648 225 HOH HOH . I 7 HOH A 149 649 54 HOH HOH . I 7 HOH A 150 650 153 HOH HOH . I 7 HOH A 151 651 218 HOH HOH . I 7 HOH A 152 652 222 HOH HOH . I 7 HOH A 153 653 228 HOH HOH . I 7 HOH A 154 654 104 HOH HOH . I 7 HOH A 155 655 183 HOH HOH . I 7 HOH A 156 656 209 HOH HOH . I 7 HOH A 157 657 189 HOH HOH . I 7 HOH A 158 658 272 HOH HOH . I 7 HOH A 159 659 254 HOH HOH . I 7 HOH A 160 660 26 HOH HOH . I 7 HOH A 161 661 246 HOH HOH . I 7 HOH A 162 662 239 HOH HOH . I 7 HOH A 163 663 234 HOH HOH . I 7 HOH A 164 664 79 HOH HOH . I 7 HOH A 165 665 68 HOH HOH . I 7 HOH A 166 666 247 HOH HOH . I 7 HOH A 167 667 115 HOH HOH . I 7 HOH A 168 668 203 HOH HOH . I 7 HOH A 169 669 206 HOH HOH . I 7 HOH A 170 670 144 HOH HOH . I 7 HOH A 171 671 223 HOH HOH . I 7 HOH A 172 672 175 HOH HOH . I 7 HOH A 173 673 214 HOH HOH . I 7 HOH A 174 674 105 HOH HOH . I 7 HOH A 175 675 266 HOH HOH . I 7 HOH A 176 676 188 HOH HOH . I 7 HOH A 177 677 157 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O5B COA . . . B 2 26.573 14.091 5.024 1 30.1 ? O5B COA 401 A 1 HETATM 2 P P1A COA . . . B 2 25.966 15.507 4.617 1 27.65 ? P1A COA 401 A 1 HETATM 3 O O1A COA . . . B 2 24.996 15.218 3.528 1 37.47 ? O1A COA 401 A 1 HETATM 4 O O2A COA . . . B 2 26.991 16.593 4.662 1 29.89 ? O2A COA 401 A 1 HETATM 5 O O3A COA . . . B 2 25.029 16.021 5.805 1 30.34 ? O3A COA 401 A 1 HETATM 6 P P2A COA . . . B 2 25.314 16.206 7.364 1 31.82 ? P2A COA 401 A 1 HETATM 7 O O4A COA . . . B 2 25.008 17.595 7.807 1 29.54 ? O4A COA 401 A 1 HETATM 8 O O5A COA . . . B 2 26.565 15.578 7.938 1 33.68 ? O5A COA 401 A 1 HETATM 9 O O6A COA . . . B 2 24.098 15.24 7.78 1 26.83 ? O6A COA 401 A 1 HETATM 10 C CBP COA . . . B 2 21.965 15.349 8.912 1 23.1 ? CBP COA 401 A 1 HETATM 11 C CCP COA . . . B 2 22.714 15.552 7.627 1 23.28 ? CCP COA 401 A 1 HETATM 12 C CDP COA . . . B 2 22.308 14.041 9.567 1 24.72 ? CDP COA 401 A 1 HETATM 13 C CEP COA . . . B 2 20.476 15.291 8.825 1 23.43 ? CEP COA 401 A 1 HETATM 14 C CAP COA . . . B 2 22.491 16.391 9.935 1 23.02 ? CAP COA 401 A 1 HETATM 15 O OAP COA . . . B 2 22.458 17.688 9.371 1 24.91 ? OAP COA 401 A 1 HETATM 16 C C9P COA . . . B 2 21.832 16.448 11.293 1 25.27 ? C9P COA 401 A 1 HETATM 17 O O9P COA . . . B 2 22.106 15.592 12.118 1 23.87 ? O9P COA 401 A 1 HETATM 18 N N8P COA . . . B 2 20.951 17.417 11.587 1 23.9 ? N8P COA 401 A 1 HETATM 19 C C7P COA . . . B 2 20.17 17.426 12.809 1 25.1 ? C7P COA 401 A 1 HETATM 20 C C6P COA . . . B 2 19.196 16.248 12.884 1 24.92 ? C6P COA 401 A 1 HETATM 21 C C5P COA . . . B 2 18.15 16.111 11.774 1 27.66 ? C5P COA 401 A 1 HETATM 22 O O5P COA . . . B 2 17.543 17.132 11.481 1 26.37 ? O5P COA 401 A 1 HETATM 23 N N4P COA . . . B 2 17.9 14.901 11.182 1 25.49 ? N4P COA 401 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 227 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #