data_5KGK # _model_server_result.job_id ja-OBXlRJ1f5CIUr_GN7WQ _model_server_result.datetime_utc '2024-12-02 14:39:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kgk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5KGK # _exptl.entry_id 5KGK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5KGK _cell.length_a 98.33 _cell.length_b 98.33 _cell.length_c 81.795 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KGK _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 109 n n C1 C2 EDO sing 110 n n C1 H11 EDO sing 111 n n C1 H12 EDO sing 112 n n O1 HO1 EDO sing 113 n n C2 O2 EDO sing 114 n n C2 H21 EDO sing 115 n n C2 H22 EDO sing 116 n n O2 HO2 EDO sing 117 n n # _atom_sites.entry_id 5KGK _atom_sites.fract_transf_matrix[1][1] 0.01017 _atom_sites.fract_transf_matrix[1][2] 0.005872 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011743 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012226 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 401 1 EDO EDO . C 2 EDO A 1 402 2 EDO EDO . D 2 EDO A 1 403 3 EDO EDO . E 2 EDO A 1 404 4 EDO EDO . F 2 EDO A 1 405 12 EDO EDO . G 2 EDO A 1 406 20 EDO EDO . H 3 6SD A 1 407 1 6SD INH . I 4 SO4 A 1 408 1 SO4 SO4 . J 4 SO4 A 1 409 2 SO4 SO4 . K 5 HOH A 1 501 15 HOH HOH . K 5 HOH A 2 502 27 HOH HOH . K 5 HOH A 3 503 3 HOH HOH . K 5 HOH A 4 504 5 HOH HOH . K 5 HOH A 5 505 4 HOH HOH . K 5 HOH A 6 506 12 HOH HOH . K 5 HOH A 7 507 21 HOH HOH . K 5 HOH A 8 508 6 HOH HOH . K 5 HOH A 9 509 13 HOH HOH . K 5 HOH A 10 510 2 HOH HOH . K 5 HOH A 11 511 1 HOH HOH . K 5 HOH A 12 512 7 HOH HOH . K 5 HOH A 13 513 8 HOH HOH . K 5 HOH A 14 514 10 HOH HOH . K 5 HOH A 15 515 25 HOH HOH . K 5 HOH A 16 516 16 HOH HOH . K 5 HOH A 17 517 29 HOH HOH . K 5 HOH A 18 518 9 HOH HOH . K 5 HOH A 19 519 11 HOH HOH . K 5 HOH A 20 520 22 HOH HOH . K 5 HOH A 21 521 28 HOH HOH . K 5 HOH A 22 522 18 HOH HOH . K 5 HOH A 23 523 17 HOH HOH . K 5 HOH A 24 524 24 HOH HOH . K 5 HOH A 25 525 14 HOH HOH . K 5 HOH A 26 526 19 HOH HOH . K 5 HOH A 27 527 20 HOH HOH . K 5 HOH A 28 528 26 HOH HOH . K 5 HOH A 29 529 23 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . B 2 32.622 28.668 -14.026 1 87.98 ? C1 EDO 401 A 1 HETATM 2 O O1 EDO . . . B 2 32.396 28.834 -15.41 1 86.71 ? O1 EDO 401 A 1 HETATM 3 C C2 EDO . . . B 2 32.276 29.984 -13.312 1 89.23 ? C2 EDO 401 A 1 HETATM 4 O O2 EDO . . . B 2 33.03 30.058 -12.121 1 90.81 ? O2 EDO 401 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 4 #