data_5KH3 # _model_server_result.job_id BLdBgiUd4Rm6h4VGLz_V8Q _model_server_result.datetime_utc '2024-10-18 04:21:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kh3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":1315}' # _entry.id 5KH3 # _exptl.entry_id 5KH3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'UNKNOWN ATOM OR ION' _entity.pdbx_number_of_molecules 13 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KH3 _cell.length_a 40.7 _cell.length_b 44.027 _cell.length_c 55.895 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KH3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 O N N ? 3 P N N ? 3 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 7 A CYS 1113 1_555 D ZN ZN . A ZN 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc2 A ND1 HIS 9 A HIS 1115 1_555 D ZN ZN . A ZN 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc3 A SG CYS 27 A CYS 1133 1_555 C ZN ZN . A ZN 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc4 A SG CYS 30 A CYS 1136 1_555 C ZN ZN . A ZN 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc5 A SG CYS 39 A CYS 1145 1_555 B ZN ZN . A ZN 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc6 A SG CYS 42 A CYS 1148 1_555 B ZN ZN . A ZN 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc7 A SG CYS 47 A CYS 1153 1_555 C ZN ZN . A ZN 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc8 A ND1 HIS 54 A HIS 1160 1_555 C ZN ZN . A ZN 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc9 A NE2 HIS 58 A HIS 1164 1_555 B ZN ZN . A ZN 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc10 A ND1 HIS 64 A HIS 1170 1_555 B ZN ZN . A ZN 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc11 A SG CYS 77 A CYS 1183 1_555 D ZN ZN . A ZN 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc12 A SG CYS 80 A CYS 1186 1_555 D ZN ZN . A ZN 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? # _chem_comp.formula ? _chem_comp.formula_weight ? _chem_comp.id UNX _chem_comp.mon_nstd_flag . _chem_comp.name 'UNKNOWN ATOM OR ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5KH3 _atom_sites.fract_transf_matrix[1][1] 0.02457 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022713 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017891 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 1301 201 ZN ZN . C 2 ZN A 1 1302 202 ZN ZN . D 2 ZN A 1 1303 203 ZN ZN . E 3 UNX A 1 1304 1 UNX UNX . F 3 UNX A 1 1305 2 UNX UNX . G 3 UNX A 1 1306 4 UNX UNX . H 3 UNX A 1 1307 5 UNX UNX . I 3 UNX A 1 1308 6 UNX UNX . J 3 UNX A 1 1309 7 UNX UNX . K 3 UNX A 1 1310 8 UNX UNX . L 3 UNX A 1 1311 9 UNX UNX . M 3 UNX A 1 1312 10 UNX UNX . N 3 UNX A 1 1313 12 UNX UNX . O 3 UNX A 1 1314 13 UNX UNX . P 3 UNX A 1 1315 14 UNX UNX . Q 3 UNX A 1 1316 18 UNX UNX . R 4 6U6 A 1 1317 1 6U6 94A . S 5 HOH A 1 1401 90 HOH HOH . S 5 HOH A 2 1402 45 HOH HOH . S 5 HOH A 3 1403 50 HOH HOH . S 5 HOH A 4 1404 19 HOH HOH . S 5 HOH A 5 1405 52 HOH HOH . S 5 HOH A 6 1406 40 HOH HOH . S 5 HOH A 7 1407 21 HOH HOH . S 5 HOH A 8 1408 30 HOH HOH . S 5 HOH A 9 1409 1 HOH HOH . S 5 HOH A 10 1410 28 HOH HOH . S 5 HOH A 11 1411 56 HOH HOH . S 5 HOH A 12 1412 27 HOH HOH . S 5 HOH A 13 1413 10 HOH HOH . S 5 HOH A 14 1414 74 HOH HOH . S 5 HOH A 15 1415 61 HOH HOH . S 5 HOH A 16 1416 42 HOH HOH . S 5 HOH A 17 1417 62 HOH HOH . S 5 HOH A 18 1418 9 HOH HOH . S 5 HOH A 19 1419 35 HOH HOH . S 5 HOH A 20 1420 3 HOH HOH . S 5 HOH A 21 1421 16 HOH HOH . S 5 HOH A 22 1422 49 HOH HOH . S 5 HOH A 23 1423 68 HOH HOH . S 5 HOH A 24 1424 23 HOH HOH . S 5 HOH A 25 1425 2 HOH HOH . S 5 HOH A 26 1426 69 HOH HOH . S 5 HOH A 27 1427 51 HOH HOH . S 5 HOH A 28 1428 22 HOH HOH . S 5 HOH A 29 1429 73 HOH HOH . S 5 HOH A 30 1430 57 HOH HOH . S 5 HOH A 31 1431 72 HOH HOH . S 5 HOH A 32 1432 46 HOH HOH . S 5 HOH A 33 1433 34 HOH HOH . S 5 HOH A 34 1434 25 HOH HOH . S 5 HOH A 35 1435 26 HOH HOH . S 5 HOH A 36 1436 18 HOH HOH . S 5 HOH A 37 1437 20 HOH HOH . S 5 HOH A 38 1438 55 HOH HOH . S 5 HOH A 39 1439 87 HOH HOH . S 5 HOH A 40 1440 8 HOH HOH . S 5 HOH A 41 1441 41 HOH HOH . S 5 HOH A 42 1442 75 HOH HOH . S 5 HOH A 43 1443 6 HOH HOH . S 5 HOH A 44 1444 14 HOH HOH . S 5 HOH A 45 1445 48 HOH HOH . S 5 HOH A 46 1446 43 HOH HOH . S 5 HOH A 47 1447 29 HOH HOH . S 5 HOH A 48 1448 66 HOH HOH . S 5 HOH A 49 1449 67 HOH HOH . S 5 HOH A 50 1450 63 HOH HOH . S 5 HOH A 51 1451 53 HOH HOH . S 5 HOH A 52 1452 81 HOH HOH . S 5 HOH A 53 1453 70 HOH HOH . S 5 HOH A 54 1454 60 HOH HOH . S 5 HOH A 55 1455 44 HOH HOH . S 5 HOH A 56 1456 59 HOH HOH . S 5 HOH A 57 1457 32 HOH HOH . S 5 HOH A 58 1458 11 HOH HOH . S 5 HOH A 59 1459 12 HOH HOH . S 5 HOH A 60 1460 7 HOH HOH . S 5 HOH A 61 1461 31 HOH HOH . S 5 HOH A 62 1462 4 HOH HOH . S 5 HOH A 63 1463 64 HOH HOH . S 5 HOH A 64 1464 85 HOH HOH . S 5 HOH A 65 1465 58 HOH HOH . S 5 HOH A 66 1466 79 HOH HOH . S 5 HOH A 67 1467 71 HOH HOH . S 5 HOH A 68 1468 33 HOH HOH . S 5 HOH A 69 1469 88 HOH HOH . S 5 HOH A 70 1470 39 HOH HOH . S 5 HOH A 71 1471 83 HOH HOH . S 5 HOH A 72 1472 77 HOH HOH . S 5 HOH A 73 1473 76 HOH HOH . S 5 HOH A 74 1474 84 HOH HOH . S 5 HOH A 75 1475 65 HOH HOH . S 5 HOH A 76 1476 89 HOH HOH . S 5 HOH A 77 1477 82 HOH HOH . S 5 HOH A 78 1478 13 HOH HOH . S 5 HOH A 79 1479 80 HOH HOH . S 5 HOH A 80 1480 36 HOH HOH . S 5 HOH A 81 1481 86 HOH HOH . S 5 HOH A 82 1482 78 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol X _atom_site.label_atom_id UNK _atom_site.label_comp_id UNX _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id P _atom_site.label_entity_id 3 _atom_site.Cartn_x 14.901 _atom_site.Cartn_y 6.034 _atom_site.Cartn_z 4.09 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 28.95 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id UNK _atom_site.auth_comp_id UNX _atom_site.auth_seq_id 1315 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #