data_5KH4 # _model_server_result.job_id 0Lp81umrTfS6V_tUsnVUQA _model_server_result.datetime_utc '2024-11-15 00:32:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kh4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 5KH4 # _exptl.entry_id 5KH4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 382.326 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FARNESYL DIPHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.69 _cell.angle_gamma 90 _cell.entry_id 5KH4 _cell.length_a 58.107 _cell.length_b 44.55 _cell.length_c 115.542 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KH4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C15 H28 O7 P2' _chem_comp.formula_weight 382.326 _chem_comp.id FPP _chem_comp.mon_nstd_flag . _chem_comp.name 'FARNESYL DIPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 FPP sing 70 n n C1 C2 FPP sing 71 n n C1 H11 FPP sing 72 n n C1 H12A FPP sing 73 n n O1 PA FPP sing 74 n n C2 C3 FPP doub 75 e n C2 H2 FPP sing 76 n n C3 C4 FPP sing 77 n n C3 C5 FPP sing 78 n n C4 H41 FPP sing 79 n n C4 H42 FPP sing 80 n n C4 H43 FPP sing 81 n n C5 C6 FPP sing 82 n n C5 H51 FPP sing 83 n n C5 H52 FPP sing 84 n n C6 C7 FPP sing 85 n n C6 H61 FPP sing 86 n n C6 H62 FPP sing 87 n n C7 C8 FPP doub 88 e n C7 H7 FPP sing 89 n n C8 C10 FPP sing 90 n n C8 C9 FPP sing 91 n n C10 H101 FPP sing 92 n n C10 H102 FPP sing 93 n n C10 H103 FPP sing 94 n n C9 C11 FPP sing 95 n n C9 H91 FPP sing 96 n n C9 H92 FPP sing 97 n n C11 C12 FPP sing 98 n n C11 H111 FPP sing 99 n n C11 H112 FPP sing 100 n n C12 C13 FPP doub 101 n n C12 H12 FPP sing 102 n n C13 C14 FPP sing 103 n n C13 C15 FPP sing 104 n n C14 H141 FPP sing 105 n n C14 H142 FPP sing 106 n n C14 H143 FPP sing 107 n n C15 H151 FPP sing 108 n n C15 H152 FPP sing 109 n n C15 H153 FPP sing 110 n n PA O1A FPP doub 111 n n PA O2A FPP sing 112 n n PA O3A FPP sing 113 n n O2A HOA2 FPP sing 114 n n O3A PB FPP sing 115 n n PB O1B FPP doub 116 n n PB O2B FPP sing 117 n n PB O3B FPP sing 118 n n O2B HOB2 FPP sing 119 n n O3B HOB3 FPP sing 120 n n # _atom_sites.entry_id 5KH4 _atom_sites.fract_transf_matrix[1][1] 0.01721 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00263 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022447 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008755 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FPP A 1 301 2 FPP FPP . D 2 FPP B 1 301 1 FPP FPP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 FPP . . . C 2 -14.053 -10.417 125.26 1 28.28 ? C1 FPP 301 A 1 HETATM 2 O O1 FPP . . . C 2 -14.858 -10.645 126.416 1 28.28 ? O1 FPP 301 A 1 HETATM 3 C C2 FPP . . . C 2 -13.654 -8.963 125.182 1 28.28 ? C2 FPP 301 A 1 HETATM 4 C C3 FPP . . . C 2 -12.532 -8.57 124.538 1 28.28 ? C3 FPP 301 A 1 HETATM 5 C C4 FPP . . . C 2 -11.635 -9.563 123.873 1 28.28 ? C4 FPP 301 A 1 HETATM 6 C C5 FPP . . . C 2 -12.118 -7.115 124.425 1 28.28 ? C5 FPP 301 A 1 HETATM 7 C C6 FPP . . . C 2 -13.354 -6.211 124.508 1 28.28 ? C6 FPP 301 A 1 HETATM 8 C C7 FPP . . . C 2 -13.099 -4.755 124.154 1 28.28 ? C7 FPP 301 A 1 HETATM 9 C C8 FPP . . . C 2 -13.58 -4.178 123.025 1 28.28 ? C8 FPP 301 A 1 HETATM 10 C C10 FPP . . . C 2 -14.362 -4.931 121.989 1 28.28 ? C10 FPP 301 A 1 HETATM 11 C C9 FPP . . . C 2 -13.29 -2.73 122.737 1 28.28 ? C9 FPP 301 A 1 HETATM 12 C C11 FPP . . . C 2 -12.088 -2.733 121.798 1 28.28 ? C11 FPP 301 A 1 HETATM 13 C C12 FPP . . . C 2 -11.849 -1.327 121.314 1 28.28 ? C12 FPP 301 A 1 HETATM 14 C C13 FPP . . . C 2 -10.626 -0.933 120.945 1 28.28 ? C13 FPP 301 A 1 HETATM 15 C C14 FPP . . . C 2 -10.462 0.475 120.443 1 28.28 ? C14 FPP 301 A 1 HETATM 16 C C15 FPP . . . C 2 -9.462 -1.889 121.017 1 28.28 ? C15 FPP 301 A 1 HETATM 17 P PA FPP . . . C 2 -15.566 -12.087 126.66 1 28.28 ? PA FPP 301 A 1 HETATM 18 O O1A FPP . . . C 2 -17.072 -11.842 126.776 1 28.28 ? O1A FPP 301 A 1 HETATM 19 O O2A FPP . . . C 2 -15.108 -13.041 125.564 1 28.28 ? O2A FPP 301 A 1 HETATM 20 O O3A FPP . . . C 2 -14.898 -12.431 128.152 1 28.28 ? O3A FPP 301 A 1 HETATM 21 P PB FPP . . . C 2 -14.294 -13.825 128.896 1 28.28 ? PB FPP 301 A 1 HETATM 22 O O1B FPP . . . C 2 -12.743 -13.728 128.906 1 28.28 ? O1B FPP 301 A 1 HETATM 23 O O2B FPP . . . C 2 -14.857 -13.693 130.339 1 28.28 ? O2B FPP 301 A 1 HETATM 24 O O3B FPP . . . C 2 -14.821 -15.077 128.126 1 28.28 ? O3B FPP 301 A 1 HETATM 25 H H11 FPP . . . C 2 -14.612 -10.693 124.363 1 23.45 ? H11 FPP 301 A 1 HETATM 26 H H12A FPP . . . C 2 -13.159 -11.042 125.307 1 23.45 ? H12A FPP 301 A 1 HETATM 27 H H2 FPP . . . C 2 -14.284 -8.22 125.643 1 23.45 ? H2 FPP 301 A 1 HETATM 28 H H41 FPP . . . C 2 -12.161 -10.046 123.091 1 23.45 ? H41 FPP 301 A 1 HETATM 29 H H42 FPP . . . C 2 -11.317 -10.283 124.582 1 23.45 ? H42 FPP 301 A 1 HETATM 30 H H43 FPP . . . C 2 -10.79 -9.064 123.474 1 23.45 ? H43 FPP 301 A 1 HETATM 31 H H51 FPP . . . C 2 -11.606 -6.951 123.475 1 23.45 ? H51 FPP 301 A 1 HETATM 32 H H52 FPP . . . C 2 -11.426 -6.865 125.231 1 23.45 ? H52 FPP 301 A 1 HETATM 33 H H61 FPP . . . C 2 -13.756 -6.26 125.522 1 23.45 ? H61 FPP 301 A 1 HETATM 34 H H62 FPP . . . C 2 -14.121 -6.605 123.838 1 23.45 ? H62 FPP 301 A 1 HETATM 35 H H7 FPP . . . C 2 -12.542 -4.147 124.846 1 23.45 ? H7 FPP 301 A 1 HETATM 36 H H101 FPP . . . C 2 -15.192 -5.403 122.446 1 23.45 ? H101 FPP 301 A 1 HETATM 37 H H102 FPP . . . C 2 -13.741 -5.663 121.541 1 23.45 ? H102 FPP 301 A 1 HETATM 38 H H103 FPP . . . C 2 -14.704 -4.257 121.247 1 23.45 ? H103 FPP 301 A 1 HETATM 39 H H91 FPP . . . C 2 -13.054 -2.196 123.66 1 23.45 ? H91 FPP 301 A 1 HETATM 40 H H92 FPP . . . C 2 -14.149 -2.255 122.26 1 23.45 ? H92 FPP 301 A 1 HETATM 41 H H111 FPP . . . C 2 -12.281 -3.391 120.948 1 23.45 ? H111 FPP 301 A 1 HETATM 42 H H112 FPP . . . C 2 -11.205 -3.1 122.324 1 23.45 ? H112 FPP 301 A 1 HETATM 43 H H12 FPP . . . C 2 -12.675 -0.639 121.246 1 23.45 ? H12 FPP 301 A 1 HETATM 44 H H141 FPP . . . C 2 -9.448 0.644 120.189 1 23.45 ? H141 FPP 301 A 1 HETATM 45 H H142 FPP . . . C 2 -10.754 1.156 121.2 1 23.45 ? H142 FPP 301 A 1 HETATM 46 H H143 FPP . . . C 2 -11.069 0.618 119.587 1 23.45 ? H143 FPP 301 A 1 HETATM 47 H H151 FPP . . . C 2 -9.691 -2.766 120.469 1 23.45 ? H151 FPP 301 A 1 HETATM 48 H H152 FPP . . . C 2 -9.276 -2.143 122.028 1 23.45 ? H152 FPP 301 A 1 HETATM 49 H H153 FPP . . . C 2 -8.601 -1.43 120.605 1 23.45 ? H153 FPP 301 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 49 #