data_5KH7 # _model_server_result.job_id o-yZDiOp54BBqnYQpJEllw _model_server_result.datetime_utc '2024-11-08 07:06:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kh7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1304}' # _entry.id 5KH7 # _exptl.entry_id 5KH7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 245.234 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-(6-oxidanylidene-3-pyridin-3-yl-pyridazin-1-yl)propanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KH7 _cell.length_a 40.719 _cell.length_b 43.776 _cell.length_c 55.924 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KH7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 7 A CYS 1113 1_555 D ZN ZN . A ZN 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc2 A ND1 HIS 9 A HIS 1115 1_555 D ZN ZN . A ZN 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc3 A SG CYS 27 A CYS 1133 1_555 C ZN ZN . A ZN 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc4 A SG CYS 30 A CYS 1136 1_555 C ZN ZN . A ZN 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc5 A SG CYS 39 A CYS 1145 1_555 B ZN ZN . A ZN 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc6 A SG CYS 42 A CYS 1148 1_555 B ZN ZN . A ZN 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc7 A SG CYS 47 A CYS 1153 1_555 C ZN ZN . A ZN 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc8 A ND1 HIS 54 A HIS 1160 1_555 C ZN ZN . A ZN 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc9 A NE2 HIS 58 A HIS 1164 1_555 B ZN ZN . A ZN 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc10 A ND1 HIS 64 A HIS 1170 1_555 B ZN ZN . A ZN 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc11 A SG CYS 77 A CYS 1183 1_555 D ZN ZN . A ZN 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc12 A SG CYS 80 A CYS 1186 1_555 D ZN ZN . A ZN 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? # _chem_comp.formula 'C12 H11 N3 O3' _chem_comp.formula_weight 245.234 _chem_comp.id 6T7 _chem_comp.mon_nstd_flag . _chem_comp.name '3-(6-oxidanylidene-3-pyridin-3-yl-pyridazin-1-yl)propanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4 C 6T7 doub 1 n y C4 N 6T7 sing 2 n y C C1 6T7 sing 3 n y N C3 6T7 doub 4 n y C1 C2 6T7 doub 5 n y C3 C2 6T7 sing 6 n y C2 C5 6T7 sing 7 n n C5 N1 6T7 doub 8 n n C5 C8 6T7 sing 9 n n N1 N2 6T7 sing 10 n n C8 C7 6T7 doub 11 n n O1 C11 6T7 doub 12 n n C10 C11 6T7 sing 13 n n C10 C9 6T7 sing 14 n n N2 C9 6T7 sing 15 n n N2 C6 6T7 sing 16 n n C11 O2 6T7 sing 17 n n C7 C6 6T7 sing 18 n n C6 O 6T7 doub 19 n n C4 H3 6T7 sing 20 n n C7 H4 6T7 sing 21 n n C8 H5 6T7 sing 22 n n C9 H7 6T7 sing 23 n n C9 H6 6T7 sing 24 n n C10 H9 6T7 sing 25 n n C10 H8 6T7 sing 26 n n O2 H10 6T7 sing 27 n n C1 H1 6T7 sing 28 n n C3 H2 6T7 sing 29 n n C H 6T7 sing 30 n n # _atom_sites.entry_id 5KH7 _atom_sites.fract_transf_matrix[1][1] 0.024559 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022844 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017881 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 1301 1301 ZN ZN . C 2 ZN A 1 1302 1302 ZN ZN . D 2 ZN A 1 1303 1303 ZN ZN . E 3 6T7 A 1 1304 1 6T7 XXX . F 4 UNX A 1 1305 1 UNX UNX . G 4 UNX A 1 1306 2 UNX UNX . H 4 UNX A 1 1307 3 UNX UNX . I 4 UNX A 1 1308 4 UNX UNX . J 4 UNX A 1 1309 5 UNX UNX . K 4 UNX A 1 1310 6 UNX UNX . L 4 UNX A 1 1311 8 UNX UNX . M 4 UNX A 1 1312 9 UNX UNX . N 4 UNX A 1 1313 10 UNX UNX . O 4 UNX A 1 1314 12 UNX UNX . P 4 UNX A 1 1315 13 UNX UNX . Q 4 UNX A 1 1316 14 UNX UNX . R 4 UNX A 1 1317 15 UNX UNX . S 4 UNX A 1 1318 16 UNX UNX . T 4 UNX A 1 1319 18 UNX UNX . U 5 HOH A 1 1401 92 HOH HOH . U 5 HOH A 2 1402 51 HOH HOH . U 5 HOH A 3 1403 80 HOH HOH . U 5 HOH A 4 1404 54 HOH HOH . U 5 HOH A 5 1405 19 HOH HOH . U 5 HOH A 6 1406 115 HOH HOH . U 5 HOH A 7 1407 41 HOH HOH . U 5 HOH A 8 1408 36 HOH HOH . U 5 HOH A 9 1409 2 HOH HOH . U 5 HOH A 10 1410 49 HOH HOH . U 5 HOH A 11 1411 26 HOH HOH . U 5 HOH A 12 1412 37 HOH HOH . U 5 HOH A 13 1413 5 HOH HOH . U 5 HOH A 14 1414 15 HOH HOH . U 5 HOH A 15 1415 105 HOH HOH . U 5 HOH A 16 1416 6 HOH HOH . U 5 HOH A 17 1417 25 HOH HOH . U 5 HOH A 18 1418 61 HOH HOH . U 5 HOH A 19 1419 120 HOH HOH . U 5 HOH A 20 1420 109 HOH HOH . U 5 HOH A 21 1421 11 HOH HOH . U 5 HOH A 22 1422 58 HOH HOH . U 5 HOH A 23 1423 112 HOH HOH . U 5 HOH A 24 1424 118 HOH HOH . U 5 HOH A 25 1425 100 HOH HOH . U 5 HOH A 26 1426 93 HOH HOH . U 5 HOH A 27 1427 7 HOH HOH . U 5 HOH A 28 1428 91 HOH HOH . U 5 HOH A 29 1429 124 HOH HOH . U 5 HOH A 30 1430 1 HOH HOH . U 5 HOH A 31 1431 14 HOH HOH . U 5 HOH A 32 1432 3 HOH HOH . U 5 HOH A 33 1433 107 HOH HOH . U 5 HOH A 34 1434 60 HOH HOH . U 5 HOH A 35 1435 75 HOH HOH . U 5 HOH A 36 1436 30 HOH HOH . U 5 HOH A 37 1437 48 HOH HOH . U 5 HOH A 38 1438 13 HOH HOH . U 5 HOH A 39 1439 57 HOH HOH . U 5 HOH A 40 1440 44 HOH HOH . U 5 HOH A 41 1441 20 HOH HOH . U 5 HOH A 42 1442 79 HOH HOH . U 5 HOH A 43 1443 46 HOH HOH . U 5 HOH A 44 1444 27 HOH HOH . U 5 HOH A 45 1445 62 HOH HOH . U 5 HOH A 46 1446 63 HOH HOH . U 5 HOH A 47 1447 9 HOH HOH . U 5 HOH A 48 1448 8 HOH HOH . U 5 HOH A 49 1449 38 HOH HOH . U 5 HOH A 50 1450 39 HOH HOH . U 5 HOH A 51 1451 55 HOH HOH . U 5 HOH A 52 1452 16 HOH HOH . U 5 HOH A 53 1453 117 HOH HOH . U 5 HOH A 54 1454 98 HOH HOH . U 5 HOH A 55 1455 113 HOH HOH . U 5 HOH A 56 1456 22 HOH HOH . U 5 HOH A 57 1457 33 HOH HOH . U 5 HOH A 58 1458 4 HOH HOH . U 5 HOH A 59 1459 122 HOH HOH . U 5 HOH A 60 1460 65 HOH HOH . U 5 HOH A 61 1461 40 HOH HOH . U 5 HOH A 62 1462 34 HOH HOH . U 5 HOH A 63 1463 32 HOH HOH . U 5 HOH A 64 1464 125 HOH HOH . U 5 HOH A 65 1465 66 HOH HOH . U 5 HOH A 66 1466 10 HOH HOH . U 5 HOH A 67 1467 83 HOH HOH . U 5 HOH A 68 1468 116 HOH HOH . U 5 HOH A 69 1469 24 HOH HOH . U 5 HOH A 70 1470 28 HOH HOH . U 5 HOH A 71 1471 31 HOH HOH . U 5 HOH A 72 1472 74 HOH HOH . U 5 HOH A 73 1473 17 HOH HOH . U 5 HOH A 74 1474 56 HOH HOH . U 5 HOH A 75 1475 106 HOH HOH . U 5 HOH A 76 1476 103 HOH HOH . U 5 HOH A 77 1477 47 HOH HOH . U 5 HOH A 78 1478 87 HOH HOH . U 5 HOH A 79 1479 68 HOH HOH . U 5 HOH A 80 1480 21 HOH HOH . U 5 HOH A 81 1481 71 HOH HOH . U 5 HOH A 82 1482 53 HOH HOH . U 5 HOH A 83 1483 102 HOH HOH . U 5 HOH A 84 1484 111 HOH HOH . U 5 HOH A 85 1485 90 HOH HOH . U 5 HOH A 86 1486 89 HOH HOH . U 5 HOH A 87 1487 121 HOH HOH . U 5 HOH A 88 1488 50 HOH HOH . U 5 HOH A 89 1489 59 HOH HOH . U 5 HOH A 90 1490 88 HOH HOH . U 5 HOH A 91 1491 110 HOH HOH . U 5 HOH A 92 1492 45 HOH HOH . U 5 HOH A 93 1493 119 HOH HOH . U 5 HOH A 94 1494 67 HOH HOH . U 5 HOH A 95 1495 69 HOH HOH . U 5 HOH A 96 1496 94 HOH HOH . U 5 HOH A 97 1497 77 HOH HOH . U 5 HOH A 98 1498 99 HOH HOH . U 5 HOH A 99 1499 97 HOH HOH . U 5 HOH A 100 1500 84 HOH HOH . U 5 HOH A 101 1501 18 HOH HOH . U 5 HOH A 102 1502 73 HOH HOH . U 5 HOH A 103 1503 104 HOH HOH . U 5 HOH A 104 1504 108 HOH HOH . U 5 HOH A 105 1505 101 HOH HOH . U 5 HOH A 106 1506 95 HOH HOH . U 5 HOH A 107 1507 43 HOH HOH . U 5 HOH A 108 1508 114 HOH HOH . U 5 HOH A 109 1509 86 HOH HOH . U 5 HOH A 110 1510 78 HOH HOH . U 5 HOH A 111 1511 85 HOH HOH . U 5 HOH A 112 1512 81 HOH HOH . U 5 HOH A 113 1513 123 HOH HOH . U 5 HOH A 114 1514 82 HOH HOH . U 5 HOH A 115 1515 76 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 6T7 . . . E 3 -0.466 6.704 3.39 1 19.83 ? C4 6T7 1304 A 1 HETATM 2 C C5 6T7 . . . E 3 -0.494 3.795 6.419 1 15.08 ? C5 6T7 1304 A 1 HETATM 3 C C6 6T7 . . . E 3 -0.581 1.905 8.483 1 14.89 ? C6 6T7 1304 A 1 HETATM 4 N N1 6T7 . . . E 3 0.661 3.299 6.809 1 14.54 ? N1 6T7 1304 A 1 HETATM 5 C C7 6T7 . . . E 3 -1.766 2.499 8.006 1 14.17 ? C7 6T7 1304 A 1 HETATM 6 C C8 6T7 . . . E 3 -1.743 3.396 7.015 1 14.59 ? C8 6T7 1304 A 1 HETATM 7 N N2 6T7 . . . E 3 0.607 2.355 7.836 1 14.27 ? N2 6T7 1304 A 1 HETATM 8 C C9 6T7 . . . E 3 1.885 1.847 8.348 1 14.14 ? C9 6T7 1304 A 1 HETATM 9 C C10 6T7 . . . E 3 3.102 2.326 7.592 1 12.65 ? C10 6T7 1304 A 1 HETATM 10 C C11 6T7 . . . E 3 3.589 3.7 7.966 1 11.37 ? C11 6T7 1304 A 1 HETATM 11 O O1 6T7 . . . E 3 4.329 4.291 7.236 1 10.37 ? O1 6T7 1304 A 1 HETATM 12 O O2 6T7 . . . E 3 3.127 4.201 9.077 1 10.67 ? O2 6T7 1304 A 1 HETATM 13 O O 6T7 . . . E 3 -0.513 1.086 9.371 1 15.48 ? O 6T7 1304 A 1 HETATM 14 C C2 6T7 . . . E 3 -0.437 4.834 5.373 1 17.21 ? C2 6T7 1304 A 1 HETATM 15 C C1 6T7 . . . E 3 0.604 4.884 4.457 1 17.84 ? C1 6T7 1304 A 1 HETATM 16 C C3 6T7 . . . E 3 -1.46 5.763 5.227 1 18.76 ? C3 6T7 1304 A 1 HETATM 17 N N 6T7 . . . E 3 -1.495 6.672 4.248 1 20.06 ? N 6T7 1304 A 1 HETATM 18 C C 6T7 . . . E 3 0.604 5.845 3.464 1 19.98 ? C 6T7 1304 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 18 #