data_5KH9 # _model_server_result.job_id nInX9vNtZ0YYXE-n-ALx-A _model_server_result.datetime_utc '2024-11-24 01:28:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kh9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1305}' # _entry.id 5KH9 # _exptl.entry_id 5KH9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 244.292 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-methyl-5-[(4-propan-2-ylphenyl)amino]-2~{H}-1,2,4-triazin-3-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KH9 _cell.length_a 41.434 _cell.length_b 44.157 _cell.length_c 56.549 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KH9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 7 A CYS 1113 1_555 D ZN ZN . A ZN 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc2 A ND1 HIS 9 A HIS 1115 1_555 D ZN ZN . A ZN 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc3 A SG CYS 27 A CYS 1133 1_555 C ZN ZN . A ZN 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc4 A SG CYS 30 A CYS 1136 1_555 C ZN ZN . A ZN 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc5 A SG CYS 39 A CYS 1145 1_555 B ZN ZN . A ZN 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc6 A SG CYS 47 A CYS 1153 1_555 C ZN ZN . A ZN 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc7 A O TYR 50 A TYR 1156 1_555 NA NA NA . A NA 1339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.902 ? metalc ? metalc8 A O ILE 51 A ILE 1157 1_555 NA NA NA . A NA 1339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc9 A ND1 HIS 54 A HIS 1160 1_555 C ZN ZN . A ZN 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc10 A NE2 HIS 58 A HIS 1164 1_555 B ZN ZN . A ZN 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc11 A ND1 HIS 64 A HIS 1170 1_555 B ZN ZN . A ZN 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc12 A SG CYS 77 A CYS 1183 1_555 D ZN ZN . A ZN 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc13 A SG CYS 80 A CYS 1186 1_555 D ZN ZN . A ZN 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? metalc ? metalc14 NA NA NA . A NA 1339 1_555 OA O HOH . A HOH 1458 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? # _chem_comp.formula 'C13 H16 N4 O' _chem_comp.formula_weight 244.292 _chem_comp.id 6T5 _chem_comp.mon_nstd_flag . _chem_comp.name 6-methyl-5-[(4-propan-2-ylphenyl)amino]-2~{H}-1,2,4-triazin-3-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O C3 6T5 doub 1 n n N1 C3 6T5 sing 2 n n N1 N2 6T5 sing 3 n n C3 N 6T5 sing 4 n n N2 C1 6T5 doub 5 n n N C2 6T5 doub 6 n n C5 C6 6T5 doub 7 n y C5 C4 6T5 sing 8 n y C1 C2 6T5 sing 9 n n C1 C 6T5 sing 10 n n C2 N3 6T5 sing 11 n n C6 C7 6T5 sing 12 n y C11 C10 6T5 sing 13 n n N3 C4 6T5 sing 14 n n C4 C9 6T5 doub 15 n y C7 C10 6T5 sing 16 n n C7 C8 6T5 doub 17 n y C10 C12 6T5 sing 18 n n C9 C8 6T5 sing 19 n y N1 H1 6T5 sing 20 n n C H2 6T5 sing 21 n n C H3 6T5 sing 22 n n C H4 6T5 sing 23 n n N3 H5 6T5 sing 24 n n C9 H6 6T5 sing 25 n n C8 H7 6T5 sing 26 n n C10 H8 6T5 sing 27 n n C12 H9 6T5 sing 28 n n C12 H10 6T5 sing 29 n n C12 H11 6T5 sing 30 n n C11 H12 6T5 sing 31 n n C11 H13 6T5 sing 32 n n C11 H14 6T5 sing 33 n n C6 H15 6T5 sing 34 n n C5 H16 6T5 sing 35 n n # _atom_sites.entry_id 5KH9 _atom_sites.fract_transf_matrix[1][1] 0.024135 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022646 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017684 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 1301 201 ZN ZN . C 2 ZN A 1 1302 202 ZN ZN . D 2 ZN A 1 1303 203 ZN ZN . E 3 FMT A 1 1304 1 FMT FMT . F 4 6T5 A 1 1305 1 6T5 469 . G 5 UNX A 1 1306 1 UNX UNX . H 5 UNX A 1 1307 2 UNX UNX . I 5 UNX A 1 1308 8 UNX UNX . J 5 UNX A 1 1309 10 UNX UNX . K 5 UNX A 1 1310 1 UNX UNX . L 5 UNX A 1 1311 2 UNX UNX . M 5 UNX A 1 1312 3 UNX UNX . N 5 UNX A 1 1313 4 UNX UNX . O 5 UNX A 1 1314 5 UNX UNX . P 5 UNX A 1 1315 6 UNX UNX . Q 5 UNX A 1 1316 7 UNX UNX . R 5 UNX A 1 1317 8 UNX UNX . S 5 UNX A 1 1318 10 UNX UNX . T 5 UNX A 1 1319 11 UNX UNX . U 5 UNX A 1 1320 13 UNX UNX . V 5 UNX A 1 1321 14 UNX UNX . W 5 UNX A 1 1322 16 UNX UNX . X 5 UNX A 1 1323 17 UNX UNX . Y 5 UNX A 1 1324 18 UNX UNX . Z 5 UNX A 1 1325 19 UNX UNX . AA 5 UNX A 1 1326 20 UNX UNX . BA 5 UNX A 1 1327 21 UNX UNX . CA 5 UNX A 1 1328 22 UNX UNX . DA 5 UNX A 1 1329 23 UNX UNX . EA 5 UNX A 1 1330 24 UNX UNX . FA 5 UNX A 1 1331 25 UNX UNX . GA 5 UNX A 1 1332 26 UNX UNX . HA 5 UNX A 1 1333 27 UNX UNX . IA 5 UNX A 1 1334 28 UNX UNX . JA 5 UNX A 1 1335 29 UNX UNX . KA 5 UNX A 1 1336 30 UNX UNX . LA 5 UNX A 1 1337 31 UNX UNX . MA 5 UNX A 1 1338 32 UNX UNX . NA 6 NA A 1 1339 1 NA NA . OA 7 HOH A 1 1401 92 HOH HOH . OA 7 HOH A 2 1402 61 HOH HOH . OA 7 HOH A 3 1403 99 HOH HOH . OA 7 HOH A 4 1404 32 HOH HOH . OA 7 HOH A 5 1405 270 HOH HOH . OA 7 HOH A 6 1406 248 HOH HOH . OA 7 HOH A 7 1407 33 HOH HOH . OA 7 HOH A 8 1408 212 HOH HOH . OA 7 HOH A 9 1409 216 HOH HOH . OA 7 HOH A 10 1410 41 HOH HOH . OA 7 HOH A 11 1411 252 HOH HOH . OA 7 HOH A 12 1412 209 HOH HOH . OA 7 HOH A 13 1413 235 HOH HOH . OA 7 HOH A 14 1414 63 HOH HOH . OA 7 HOH A 15 1415 30 HOH HOH . OA 7 HOH A 16 1416 34 HOH HOH . OA 7 HOH A 17 1417 305 HOH HOH . OA 7 HOH A 18 1418 211 HOH HOH . OA 7 HOH A 19 1419 43 HOH HOH . OA 7 HOH A 20 1420 100 HOH HOH . OA 7 HOH A 21 1421 232 HOH HOH . OA 7 HOH A 22 1422 204 HOH HOH . OA 7 HOH A 23 1423 255 HOH HOH . OA 7 HOH A 24 1424 244 HOH HOH . OA 7 HOH A 25 1425 262 HOH HOH . OA 7 HOH A 26 1426 341 HOH HOH . OA 7 HOH A 27 1427 214 HOH HOH . OA 7 HOH A 28 1428 340 HOH HOH . OA 7 HOH A 29 1429 206 HOH HOH . OA 7 HOH A 30 1430 233 HOH HOH . OA 7 HOH A 31 1431 276 HOH HOH . OA 7 HOH A 32 1432 98 HOH HOH . OA 7 HOH A 33 1433 258 HOH HOH . OA 7 HOH A 34 1434 238 HOH HOH . OA 7 HOH A 35 1435 20 HOH HOH . OA 7 HOH A 36 1436 331 HOH HOH . OA 7 HOH A 37 1437 42 HOH HOH . OA 7 HOH A 38 1438 225 HOH HOH . OA 7 HOH A 39 1439 228 HOH HOH . OA 7 HOH A 40 1440 207 HOH HOH . OA 7 HOH A 41 1441 249 HOH HOH . OA 7 HOH A 42 1442 93 HOH HOH . OA 7 HOH A 43 1443 44 HOH HOH . OA 7 HOH A 44 1444 237 HOH HOH . OA 7 HOH A 45 1445 241 HOH HOH . OA 7 HOH A 46 1446 280 HOH HOH . OA 7 HOH A 47 1447 37 HOH HOH . OA 7 HOH A 48 1448 40 HOH HOH . OA 7 HOH A 49 1449 347 HOH HOH . OA 7 HOH A 50 1450 88 HOH HOH . OA 7 HOH A 51 1451 218 HOH HOH . OA 7 HOH A 52 1452 59 HOH HOH . OA 7 HOH A 53 1453 210 HOH HOH . OA 7 HOH A 54 1454 240 HOH HOH . OA 7 HOH A 55 1455 250 HOH HOH . OA 7 HOH A 56 1456 283 HOH HOH . OA 7 HOH A 57 1457 101 HOH HOH . OA 7 HOH A 58 1458 297 HOH HOH . OA 7 HOH A 59 1459 239 HOH HOH . OA 7 HOH A 60 1460 2 HOH HOH . OA 7 HOH A 61 1461 327 HOH HOH . OA 7 HOH A 62 1462 261 HOH HOH . OA 7 HOH A 63 1463 221 HOH HOH . OA 7 HOH A 64 1464 95 HOH HOH . OA 7 HOH A 65 1465 76 HOH HOH . OA 7 HOH A 66 1466 91 HOH HOH . OA 7 HOH A 67 1467 277 HOH HOH . OA 7 HOH A 68 1468 97 HOH HOH . OA 7 HOH A 69 1469 58 HOH HOH . OA 7 HOH A 70 1470 38 HOH HOH . OA 7 HOH A 71 1471 279 HOH HOH . OA 7 HOH A 72 1472 342 HOH HOH . OA 7 HOH A 73 1473 344 HOH HOH . OA 7 HOH A 74 1474 356 HOH HOH . OA 7 HOH A 75 1475 36 HOH HOH . OA 7 HOH A 76 1476 45 HOH HOH . OA 7 HOH A 77 1477 94 HOH HOH . OA 7 HOH A 78 1478 4 HOH HOH . OA 7 HOH A 79 1479 31 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O 6T5 . . . F 4 -2.552 5.217 6.263 0.85 22.78 ? O 6T5 1305 A 1 HETATM 2 C C3 6T5 . . . F 4 -2.188 4.259 6.976 0.85 19.73 ? C3 6T5 1305 A 1 HETATM 3 N N1 6T5 . . . F 4 -0.881 3.896 6.961 0.85 17.5 ? N1 6T5 1305 A 1 HETATM 4 N N2 6T5 . . . F 4 -0.348 2.881 7.718 0.85 16.42 ? N2 6T5 1305 A 1 HETATM 5 C C1 6T5 . . . F 4 -1.156 2.196 8.454 0.85 15.81 ? C1 6T5 1305 A 1 HETATM 6 C C 6T5 . . . F 4 -0.58 1.082 9.258 0.85 14.87 ? C 6T5 1305 A 1 HETATM 7 N N 6T5 . . . F 4 -3.05 3.553 7.778 0.85 17.9 ? N 6T5 1305 A 1 HETATM 8 C C2 6T5 . . . F 4 -2.57 2.526 8.494 0.85 16.43 ? C2 6T5 1305 A 1 HETATM 9 N N3 6T5 . . . F 4 -3.441 2.025 9.393 0.85 16.84 ? N3 6T5 1305 A 1 HETATM 10 C C4 6T5 . . . F 4 -4.854 2.124 9.49 0.85 16.88 ? C4 6T5 1305 A 1 HETATM 11 C C9 6T5 . . . F 4 -5.434 1.806 10.717 0.85 17.59 ? C9 6T5 1305 A 1 HETATM 12 C C8 6T5 . . . F 4 -6.805 1.898 10.883 0.85 19.25 ? C8 6T5 1305 A 1 HETATM 13 C C7 6T5 . . . F 4 -7.636 2.258 9.824 0.85 20.41 ? C7 6T5 1305 A 1 HETATM 14 C C10 6T5 . . . F 4 -9.141 2.352 10.053 0.85 24.22 ? C10 6T5 1305 A 1 HETATM 15 C C12 6T5 . . . F 4 -9.59 3.786 10.369 0.85 25.23 ? C12 6T5 1305 A 1 HETATM 16 C C11 6T5 . . . F 4 -9.969 1.728 8.924 0.85 29.83 ? C11 6T5 1305 A 1 HETATM 17 C C6 6T5 . . . F 4 -7.053 2.507 8.583 0.85 20.03 ? C6 6T5 1305 A 1 HETATM 18 C C5 6T5 . . . F 4 -5.682 2.429 8.407 0.85 17.09 ? C5 6T5 1305 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 32 _model_server_stats.element_count 18 #