data_5KHH # _model_server_result.job_id r-56H3lUrIKpg70WsjiGYg _model_server_result.datetime_utc '2024-11-15 11:30:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5khh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 5KHH # _exptl.entry_id 5KHH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 330.191 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "Inosine-3',5'-cyclic monophosphate" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KHH _cell.length_a 96.037 _cell.length_b 96.037 _cell.length_c 115.913 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KHH _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASN 68 A ASN 507 1_555 A N CSX 69 A CSX 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 A C CSX 69 A CSX 508 1_555 A N ARG 70 A ARG 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? # _chem_comp.formula 'C10 H11 N4 O7 P' _chem_comp.formula_weight 330.191 _chem_comp.id 6SW _chem_comp.mon_nstd_flag . _chem_comp.name "Inosine-3',5'-cyclic monophosphate" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms cIMP # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O4 P 6SW doub 1 n n O1 C9 6SW doub 2 n n N1 C5 6SW doub 3 n y N1 C6 6SW sing 4 n y C5 N 6SW sing 5 n y C6 C9 6SW sing 6 n n C6 C7 6SW doub 7 n y C9 N3 6SW sing 8 n n P O6 6SW sing 9 n n P O3 6SW sing 10 n n P O5 6SW sing 11 n n O3 C2 6SW sing 12 n n C2 C3 6SW sing 13 n n C2 C1 6SW sing 14 n n N C7 6SW sing 15 n y N C4 6SW sing 16 n n C3 C4 6SW sing 17 n n C3 O2 6SW sing 18 n n N3 C8 6SW sing 19 n n C7 N2 6SW sing 20 n n O5 C 6SW sing 21 n n C4 O 6SW sing 22 n n C C1 6SW sing 23 n n C1 O 6SW sing 24 n n C8 N2 6SW doub 25 n n C8 H1 6SW sing 26 n n C5 H2 6SW sing 27 n n O6 H3 6SW sing 28 n n C2 H4 6SW sing 29 n n N3 H5 6SW sing 30 n n C4 H6 6SW sing 31 n n C H7 6SW sing 32 n n C H8 6SW sing 33 n n C3 H9 6SW sing 34 n n O2 H10 6SW sing 35 n n C1 H11 6SW sing 36 n n # _atom_sites.entry_id 5KHH _atom_sites.fract_transf_matrix[1][1] 0.010413 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010413 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008627 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6SW A 1 701 1 6SW IMP . C 3 HOH A 1 801 227 HOH HOH . C 3 HOH A 2 802 107 HOH HOH . C 3 HOH A 3 803 194 HOH HOH . C 3 HOH A 4 804 212 HOH HOH . C 3 HOH A 5 805 43 HOH HOH . C 3 HOH A 6 806 24 HOH HOH . C 3 HOH A 7 807 130 HOH HOH . C 3 HOH A 8 808 85 HOH HOH . C 3 HOH A 9 809 19 HOH HOH . C 3 HOH A 10 810 9 HOH HOH . C 3 HOH A 11 811 31 HOH HOH . C 3 HOH A 12 812 69 HOH HOH . C 3 HOH A 13 813 171 HOH HOH . C 3 HOH A 14 814 59 HOH HOH . C 3 HOH A 15 815 47 HOH HOH . C 3 HOH A 16 816 136 HOH HOH . C 3 HOH A 17 817 118 HOH HOH . C 3 HOH A 18 818 183 HOH HOH . C 3 HOH A 19 819 100 HOH HOH . C 3 HOH A 20 820 77 HOH HOH . C 3 HOH A 21 821 179 HOH HOH . C 3 HOH A 22 822 40 HOH HOH . C 3 HOH A 23 823 54 HOH HOH . C 3 HOH A 24 824 83 HOH HOH . C 3 HOH A 25 825 45 HOH HOH . C 3 HOH A 26 826 37 HOH HOH . C 3 HOH A 27 827 164 HOH HOH . C 3 HOH A 28 828 90 HOH HOH . C 3 HOH A 29 829 181 HOH HOH . C 3 HOH A 30 830 57 HOH HOH . C 3 HOH A 31 831 68 HOH HOH . C 3 HOH A 32 832 187 HOH HOH . C 3 HOH A 33 833 35 HOH HOH . C 3 HOH A 34 834 58 HOH HOH . C 3 HOH A 35 835 70 HOH HOH . C 3 HOH A 36 836 39 HOH HOH . C 3 HOH A 37 837 86 HOH HOH . C 3 HOH A 38 838 219 HOH HOH . C 3 HOH A 39 839 13 HOH HOH . C 3 HOH A 40 840 46 HOH HOH . C 3 HOH A 41 841 6 HOH HOH . C 3 HOH A 42 842 53 HOH HOH . C 3 HOH A 43 843 42 HOH HOH . C 3 HOH A 44 844 87 HOH HOH . C 3 HOH A 45 845 56 HOH HOH . C 3 HOH A 46 846 62 HOH HOH . C 3 HOH A 47 847 176 HOH HOH . C 3 HOH A 48 848 16 HOH HOH . C 3 HOH A 49 849 20 HOH HOH . C 3 HOH A 50 850 63 HOH HOH . C 3 HOH A 51 851 22 HOH HOH . C 3 HOH A 52 852 29 HOH HOH . C 3 HOH A 53 853 38 HOH HOH . C 3 HOH A 54 854 66 HOH HOH . C 3 HOH A 55 855 15 HOH HOH . C 3 HOH A 56 856 11 HOH HOH . C 3 HOH A 57 857 108 HOH HOH . C 3 HOH A 58 858 72 HOH HOH . C 3 HOH A 59 859 28 HOH HOH . C 3 HOH A 60 860 80 HOH HOH . C 3 HOH A 61 861 1 HOH HOH . C 3 HOH A 62 862 73 HOH HOH . C 3 HOH A 63 863 81 HOH HOH . C 3 HOH A 64 864 25 HOH HOH . C 3 HOH A 65 865 104 HOH HOH . C 3 HOH A 66 866 12 HOH HOH . C 3 HOH A 67 867 132 HOH HOH . C 3 HOH A 68 868 200 HOH HOH . C 3 HOH A 69 869 67 HOH HOH . C 3 HOH A 70 870 144 HOH HOH . C 3 HOH A 71 871 64 HOH HOH . C 3 HOH A 72 872 153 HOH HOH . C 3 HOH A 73 873 115 HOH HOH . C 3 HOH A 74 874 151 HOH HOH . C 3 HOH A 75 875 141 HOH HOH . C 3 HOH A 76 876 32 HOH HOH . C 3 HOH A 77 877 23 HOH HOH . C 3 HOH A 78 878 18 HOH HOH . C 3 HOH A 79 879 55 HOH HOH . C 3 HOH A 80 880 177 HOH HOH . C 3 HOH A 81 881 36 HOH HOH . C 3 HOH A 82 882 154 HOH HOH . C 3 HOH A 83 883 103 HOH HOH . C 3 HOH A 84 884 221 HOH HOH . C 3 HOH A 85 885 33 HOH HOH . C 3 HOH A 86 886 134 HOH HOH . C 3 HOH A 87 887 208 HOH HOH . C 3 HOH A 88 888 41 HOH HOH . C 3 HOH A 89 889 147 HOH HOH . C 3 HOH A 90 890 150 HOH HOH . C 3 HOH A 91 891 44 HOH HOH . C 3 HOH A 92 892 102 HOH HOH . C 3 HOH A 93 893 157 HOH HOH . C 3 HOH A 94 894 34 HOH HOH . C 3 HOH A 95 895 128 HOH HOH . C 3 HOH A 96 896 2 HOH HOH . C 3 HOH A 97 897 88 HOH HOH . C 3 HOH A 98 898 139 HOH HOH . C 3 HOH A 99 899 196 HOH HOH . C 3 HOH A 100 900 76 HOH HOH . C 3 HOH A 101 901 65 HOH HOH . C 3 HOH A 102 902 195 HOH HOH . C 3 HOH A 103 903 126 HOH HOH . C 3 HOH A 104 904 123 HOH HOH . C 3 HOH A 105 905 114 HOH HOH . C 3 HOH A 106 906 201 HOH HOH . C 3 HOH A 107 907 156 HOH HOH . C 3 HOH A 108 908 95 HOH HOH . C 3 HOH A 109 909 216 HOH HOH . C 3 HOH A 110 910 71 HOH HOH . C 3 HOH A 111 911 125 HOH HOH . C 3 HOH A 112 912 193 HOH HOH . C 3 HOH A 113 913 222 HOH HOH . C 3 HOH A 114 914 82 HOH HOH . C 3 HOH A 115 915 17 HOH HOH . C 3 HOH A 116 916 110 HOH HOH . C 3 HOH A 117 917 148 HOH HOH . C 3 HOH A 118 918 228 HOH HOH . C 3 HOH A 119 919 226 HOH HOH . C 3 HOH A 120 920 49 HOH HOH . C 3 HOH A 121 921 91 HOH HOH . C 3 HOH A 122 922 101 HOH HOH . C 3 HOH A 123 923 169 HOH HOH . C 3 HOH A 124 924 192 HOH HOH . C 3 HOH A 125 925 106 HOH HOH . C 3 HOH A 126 926 137 HOH HOH . C 3 HOH A 127 927 27 HOH HOH . C 3 HOH A 128 928 122 HOH HOH . C 3 HOH A 129 929 7 HOH HOH . C 3 HOH A 130 930 124 HOH HOH . C 3 HOH A 131 931 223 HOH HOH . C 3 HOH A 132 932 121 HOH HOH . C 3 HOH A 133 933 178 HOH HOH . C 3 HOH A 134 934 188 HOH HOH . C 3 HOH A 135 935 111 HOH HOH . C 3 HOH A 136 936 129 HOH HOH . C 3 HOH A 137 937 14 HOH HOH . C 3 HOH A 138 938 119 HOH HOH . C 3 HOH A 139 939 217 HOH HOH . C 3 HOH A 140 940 197 HOH HOH . C 3 HOH A 141 941 10 HOH HOH . C 3 HOH A 142 942 182 HOH HOH . C 3 HOH A 143 943 152 HOH HOH . C 3 HOH A 144 944 52 HOH HOH . C 3 HOH A 145 945 184 HOH HOH . C 3 HOH A 146 946 127 HOH HOH . C 3 HOH A 147 947 135 HOH HOH . C 3 HOH A 148 948 30 HOH HOH . C 3 HOH A 149 949 79 HOH HOH . C 3 HOH A 150 950 4 HOH HOH . C 3 HOH A 151 951 3 HOH HOH . C 3 HOH A 152 952 189 HOH HOH . C 3 HOH A 153 953 8 HOH HOH . C 3 HOH A 154 954 209 HOH HOH . C 3 HOH A 155 955 26 HOH HOH . C 3 HOH A 156 956 117 HOH HOH . C 3 HOH A 157 957 60 HOH HOH . C 3 HOH A 158 958 224 HOH HOH . C 3 HOH A 159 959 5 HOH HOH . C 3 HOH A 160 960 168 HOH HOH . C 3 HOH A 161 961 206 HOH HOH . C 3 HOH A 162 962 21 HOH HOH . C 3 HOH A 163 963 214 HOH HOH . C 3 HOH A 164 964 225 HOH HOH . C 3 HOH A 165 966 75 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 6SW . . . B 2 -26.108 4.788 -44.754 1 30.29 ? P 6SW 701 A 1 HETATM 2 C C8 6SW . . . B 2 -34.637 2.186 -43.015 1 43.7 ? C8 6SW 701 A 1 HETATM 3 C C5 6SW . . . B 2 -31.756 4.751 -45.206 1 35.47 ? C5 6SW 701 A 1 HETATM 4 C C6 6SW . . . B 2 -33.728 3.902 -44.972 1 38.68 ? C6 6SW 701 A 1 HETATM 5 O O6 6SW . . . B 2 -24.657 4.311 -44.707 1 28.16 ? O6 6SW 701 A 1 HETATM 6 N N1 6SW . . . B 2 -33.001 4.726 -45.73 1 37.46 ? N1 6SW 701 A 1 HETATM 7 C C2 6SW . . . B 2 -28.529 3.986 -44.33 1 29.9 ? C2 6SW 701 A 1 HETATM 8 N N3 6SW . . . B 2 -35.491 2.583 -43.989 1 41.71 ? N3 6SW 701 A 1 HETATM 9 C C4 6SW . . . B 2 -30.565 3.75 -43.244 1 30.54 ? C4 6SW 701 A 1 HETATM 10 O O4 6SW . . . B 2 -26.395 5.63 -45.945 1 29.43 ? O4 6SW 701 A 1 HETATM 11 O O5 6SW . . . B 2 -26.411 5.7 -43.431 1 29.66 ? O5 6SW 701 A 1 HETATM 12 C C 6SW . . . B 2 -27.751 6.069 -43.216 1 27.85 ? C 6SW 701 A 1 HETATM 13 O O3 6SW . . . B 2 -27.182 3.615 -44.587 1 28.6 ? O3 6SW 701 A 1 HETATM 14 C C3 6SW . . . B 2 -29.545 2.934 -44.021 1 30.3 ? C3 6SW 701 A 1 HETATM 15 O O2 6SW . . . B 2 -29.106 1.899 -43.154 1 30.54 ? O2 6SW 701 A 1 HETATM 16 O O 6SW . . . B 2 -29.941 4.97 -42.928 1 28.59 ? O 6SW 701 A 1 HETATM 17 C C1 6SW . . . B 2 -28.564 4.816 -43.062 1 28.02 ? C1 6SW 701 A 1 HETATM 18 N N 6SW . . . B 2 -31.717 3.979 -44.108 1 32.79 ? N 6SW 701 A 1 HETATM 19 C C7 6SW . . . B 2 -32.875 3.415 -43.898 1 34.19 ? C7 6SW 701 A 1 HETATM 20 N N2 6SW . . . B 2 -33.359 2.599 -42.973 1 37.02 ? N2 6SW 701 A 1 HETATM 21 C C9 6SW . . . B 2 -35.115 3.425 -44.966 1 42.27 ? C9 6SW 701 A 1 HETATM 22 O O1 6SW . . . B 2 -35.894 3.784 -45.868 1 45.1 ? O1 6SW 701 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 22 #