data_5KHP
#
_model_server_result.job_id            IDLcvBdvZd0S_Dtq53_AcA 
_model_server_result.datetime_utc      '2024-11-04 20:37:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5khp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":202}' 
#
_entry.id    5KHP 
#
_exptl.entry_id    5KHP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              746.76 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "N,N'-(butane-1,4-diyl)bis(N-{3-[(2,3-dihydroxybenzene-1-carbonyl)amino]propyl}-2,3-dihydroxybenzamide)" 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5KHP 
_cell.length_a            114.383 
_cell.length_b            114.383 
_cell.length_c            117.121 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5KHP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,G,H,I,S 1 1 
B,J,K 2 1 
C,L,M,N,O,P,Q,R,T 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 K N N 
? 3 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 78 A CYS 76 1_555 A SG CYS 177 A CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? 
disulf ? disulf2 B SG CYS 78 B CYS 76 1_555 B SG CYS 177 B CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf3 C SG CYS 78 C CYS 76 1_555 C SG CYS 177 C CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? 
#
_chem_comp.formula           'C38 H42 N4 O12' 
_chem_comp.formula_weight    746.76 
_chem_comp.id                7K9 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "N,N'-(butane-1,4-diyl)bis(N-{3-[(2,3-dihydroxybenzene-1-carbonyl)amino]propyl}-2,3-dihydroxybenzamide)" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O53 C33 7K9 doub 1 n n 
C31 C30 7K9 sing 2 n n 
C31 N32 7K9 sing 3 n n 
C30 C29 7K9 sing 4 n n 
C33 N32 7K9 sing 5 n n 
C33 C40 7K9 sing 6 n n 
C40 C41 7K9 doub 7 n y 
C40 C45 7K9 sing 8 n y 
C41 C42 7K9 sing 9 n y 
O50 C45 7K9 sing 10 n n 
C45 C44 7K9 doub 11 n y 
C42 C43 7K9 doub 12 n y 
C44 C43 7K9 sing 13 n y 
C44 O51 7K9 sing 14 n n 
C29 H1 7K9 sing 15 n n 
C30 H4 7K9 sing 16 n n 
C31 H6 7K9 sing 17 n n 
N32 H8 7K9 sing 18 n n 
O50 H13 7K9 sing 19 n n 
C29 N1 7K9 sing 20 n n 
N1 C2 7K9 sing 21 n n 
C2 C3 7K9 sing 22 n n 
N1 C4 7K9 sing 23 n n 
C4 C5 7K9 sing 24 n n 
C5 C6 7K9 sing 25 n n 
C6 C7 7K9 sing 26 n n 
C7 N2 7K9 sing 27 n n 
N2 C9 7K9 sing 28 n n 
C9 C10 7K9 sing 29 n n 
N2 C11 7K9 sing 30 n n 
C11 C12 7K9 sing 31 n n 
C12 C13 7K9 sing 32 n n 
C13 N3 7K9 sing 33 n n 
N3 C15 7K9 sing 34 n n 
C15 C16 7K9 sing 35 n n 
C3 C1 7K9 sing 36 n y 
C1 C8 7K9 doub 37 n y 
C8 C14 7K9 sing 38 n y 
C14 C17 7K9 doub 39 n y 
C17 C18 7K9 sing 40 n y 
C18 C3 7K9 doub 41 n y 
C16 C19 7K9 sing 42 n y 
C19 C20 7K9 doub 43 n y 
C20 C21 7K9 sing 44 n y 
C21 C22 7K9 doub 45 n y 
C22 C23 7K9 sing 46 n y 
C23 C16 7K9 doub 47 n y 
C2 O1 7K9 doub 48 n n 
C15 O3 7K9 doub 49 n n 
C9 O2 7K9 doub 50 n n 
C10 C24 7K9 sing 51 n y 
C24 C25 7K9 doub 52 n y 
C25 C26 7K9 sing 53 n y 
C26 C27 7K9 doub 54 n y 
C27 C28 7K9 sing 55 n y 
C28 C10 7K9 doub 56 n y 
C18 O4 7K9 sing 57 n n 
C17 O5 7K9 sing 58 n n 
C23 O6 7K9 sing 59 n n 
C22 O7 7K9 sing 60 n n 
C4 H12 7K9 sing 61 n n 
C4 H14 7K9 sing 62 n n 
C5 H15 7K9 sing 63 n n 
C5 H16 7K9 sing 64 n n 
C6 H17 7K9 sing 65 n n 
C6 H18 7K9 sing 66 n n 
C7 H19 7K9 sing 67 n n 
C7 H20 7K9 sing 68 n n 
C11 H21 7K9 sing 69 n n 
C11 H22 7K9 sing 70 n n 
C12 H23 7K9 sing 71 n n 
C12 H24 7K9 sing 72 n n 
C13 H25 7K9 sing 73 n n 
C13 H26 7K9 sing 74 n n 
N3 H27 7K9 sing 75 n n 
C1 H28 7K9 sing 76 n n 
C8 H29 7K9 sing 77 n n 
C14 H30 7K9 sing 78 n n 
C19 H31 7K9 sing 79 n n 
C20 H32 7K9 sing 80 n n 
C21 H33 7K9 sing 81 n n 
C24 H34 7K9 sing 82 n n 
C25 H35 7K9 sing 83 n n 
C26 H36 7K9 sing 84 n n 
O4 H39 7K9 sing 85 n n 
O5 H40 7K9 sing 86 n n 
O6 H41 7K9 sing 87 n n 
O7 H42 7K9 sing 88 n n 
C28 O8 7K9 sing 89 n n 
O8 H38 7K9 sing 90 n n 
C27 O9 7K9 sing 91 n n 
C29 H2 7K9 sing 92 n n 
C30 H3 7K9 sing 93 n n 
C31 H9 7K9 sing 94 n n 
C41 H5 7K9 sing 95 n n 
C42 H7 7K9 sing 96 n n 
C43 H10 7K9 sing 97 n n 
O51 H11 7K9 sing 98 n n 
O9 H37 7K9 sing 99 n n 
#
_atom_sites.entry_id                     5KHP 
_atom_sites.fract_transf_matrix[1][1]    0.008743 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008743 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008538 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 ZR A 1 201 300 ZR ZR . 
E 3 7K9 A 1 202 301 7K9 CAM . 
F 4 SO4 A 1 203 3 SO4 SO4 . 
G 4 SO4 A 1 204 5 SO4 SO4 . 
H 4 SO4 A 1 205 6 SO4 SO4 . 
I 4 SO4 A 1 206 7 SO4 SO4 . 
J 2 ZR B 1 300 300 ZR ZR . 
K 3 7K9 B 1 301 301 7K9 CAM . 
L 2 ZR C 1 201 300 ZR ZR . 
M 3 7K9 C 1 202 301 7K9 CAM . 
N 4 SO4 C 1 203 1 SO4 SO4 . 
O 4 SO4 C 1 204 2 SO4 SO4 . 
P 4 SO4 C 1 205 4 SO4 SO4 . 
Q 4 SO4 C 1 206 8 SO4 SO4 . 
R 5 GOL C 1 207 1 GOL GOL . 
S 6 HOH A 1 301 39 HOH HOH . 
S 6 HOH A 2 302 60 HOH HOH . 
S 6 HOH A 3 303 43 HOH HOH . 
S 6 HOH A 4 304 61 HOH HOH . 
S 6 HOH A 5 305 31 HOH HOH . 
S 6 HOH A 6 306 28 HOH HOH . 
S 6 HOH A 7 307 24 HOH HOH . 
S 6 HOH A 8 308 52 HOH HOH . 
S 6 HOH A 9 309 62 HOH HOH . 
S 6 HOH A 10 310 26 HOH HOH . 
S 6 HOH A 11 311 51 HOH HOH . 
S 6 HOH A 12 312 57 HOH HOH . 
S 6 HOH A 13 313 47 HOH HOH . 
S 6 HOH A 14 314 25 HOH HOH . 
S 6 HOH A 15 315 27 HOH HOH . 
S 6 HOH A 16 316 21 HOH HOH . 
S 6 HOH A 17 317 29 HOH HOH . 
S 6 HOH A 18 318 56 HOH HOH . 
S 6 HOH A 19 319 12 HOH HOH . 
S 6 HOH A 20 320 49 HOH HOH . 
S 6 HOH A 21 321 46 HOH HOH . 
S 6 HOH A 22 322 34 HOH HOH . 
T 6 HOH C 1 301 38 HOH HOH . 
T 6 HOH C 2 302 59 HOH HOH . 
T 6 HOH C 3 303 40 HOH HOH . 
T 6 HOH C 4 304 23 HOH HOH . 
T 6 HOH C 5 305 18 HOH HOH . 
T 6 HOH C 6 306 58 HOH HOH . 
T 6 HOH C 7 307 54 HOH HOH . 
T 6 HOH C 8 308 15 HOH HOH . 
T 6 HOH C 9 309 33 HOH HOH . 
T 6 HOH C 10 310 37 HOH HOH . 
T 6 HOH C 11 311 41 HOH HOH . 
T 6 HOH C 12 312 53 HOH HOH . 
T 6 HOH C 13 313 42 HOH HOH . 
T 6 HOH C 14 314 36 HOH HOH . 
T 6 HOH C 15 315 16 HOH HOH . 
T 6 HOH C 16 316 48 HOH HOH . 
T 6 HOH C 17 317 55 HOH HOH . 
T 6 HOH C 18 318 50 HOH HOH . 
T 6 HOH C 19 319 13 HOH HOH . 
T 6 HOH C 20 320 45 HOH HOH . 
T 6 HOH C 21 321 44 HOH HOH . 
T 6 HOH C 22 322 2 HOH HOH . 
T 6 HOH C 23 323 19 HOH HOH . 
T 6 HOH C 24 324 11 HOH HOH . 
T 6 HOH C 25 325 35 HOH HOH . 
T 6 HOH C 26 326 32 HOH HOH . 
T 6 HOH C 27 327 10 HOH HOH . 
T 6 HOH C 28 328 30 HOH HOH . 
T 6 HOH C 29 329 14 HOH HOH . 
T 6 HOH C 30 330 17 HOH HOH . 
T 6 HOH C 31 331 20 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C29 7K9 . . . M 3 52.973 32.968 40.55 1 66.25 ? C29 7K9 202 C 1 
HETATM 2 C C30 7K9 . . . M 3 53.551 34.189 39.83 1 78.35 ? C30 7K9 202 C 1 
HETATM 3 C C31 7K9 . . . M 3 52.478 35.223 39.461 1 82.07 ? C31 7K9 202 C 1 
HETATM 4 N N32 7K9 . . . M 3 52.522 36.35 40.4 1 71.12 ? N32 7K9 202 C 1 
HETATM 5 C C33 7K9 . . . M 3 52.164 37.616 40.151 1 66.46 ? C33 7K9 202 C 1 
HETATM 6 O O53 7K9 . . . M 3 51.763 37.942 39.052 1 64.84 ? O53 7K9 202 C 1 
HETATM 7 C C40 7K9 . . . M 3 52.237 38.672 41.228 1 70.02 ? C40 7K9 202 C 1 
HETATM 8 C C41 7K9 . . . M 3 53.402 39.414 41.42 1 61.83 ? C41 7K9 202 C 1 
HETATM 9 C C42 7K9 . . . M 3 53.467 40.376 42.428 1 63.05 ? C42 7K9 202 C 1 
HETATM 10 C C43 7K9 . . . M 3 52.362 40.617 43.241 1 78.69 ? C43 7K9 202 C 1 
HETATM 11 C C44 7K9 . . . M 3 51.18 39.895 43.039 1 92.46 ? C44 7K9 202 C 1 
HETATM 12 O O51 7K9 . . . M 3 50.099 40.145 43.849 1 74.05 ? O51 7K9 202 C 1 
HETATM 13 C C45 7K9 . . . M 3 51.122 38.936 42.017 1 80.26 ? C45 7K9 202 C 1 
HETATM 14 O O50 7K9 . . . M 3 49.983 38.212 41.804 1 85.98 ? O50 7K9 202 C 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           287 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#