data_5KHX # _model_server_result.job_id JItdtg5dHwXScCUvo8ABcw _model_server_result.datetime_utc '2024-11-22 06:17:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5khx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":4000}' # _entry.id 5KHX # _exptl.entry_id 5KHX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 295.361 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-[3-[methyl(7~{H}-pyrrolo[2,3-d]pyrimidin-4-yl)amino]cyclobutyl]methanesulfonamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KHX _cell.length_a 46.25 _cell.length_b 88.3 _cell.length_c 146.84 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KHX _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 195 A GLU 1033 1_555 A N PTR 196 A PTR 1034 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 A C PTR 196 A PTR 1034 1_555 A N PTR 197 A PTR 1035 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale3 A C PTR 197 A PTR 1035 1_555 A N THR 198 A THR 1036 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C12 H17 N5 O2 S' _chem_comp.formula_weight 295.361 _chem_comp.id 6TE _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-[3-[methyl(7~{H}-pyrrolo[2,3-d]pyrimidin-4-yl)amino]cyclobutyl]methanesulfonamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N3 C7 6TE doub 1 n y N3 C8 6TE sing 2 n y C4 N2 6TE sing 3 n n C4 C3 6TE sing 4 n n C4 C5 6TE sing 5 n n N2 S1 6TE sing 6 n n C7 N1 6TE sing 7 n n C7 C10 6TE sing 8 n y C6 S1 6TE sing 9 n n C9 N5 6TE sing 10 n y C9 N4 6TE sing 11 n y C9 C10 6TE doub 12 n y C8 N4 6TE doub 13 n y N5 C12 6TE sing 14 n y C1 N1 6TE sing 15 n n N1 C2 6TE sing 16 n n C2 C3 6TE sing 17 n n C2 C5 6TE sing 18 n n S1 O1 6TE doub 19 n n S1 O2 6TE doub 20 n n C10 C11 6TE sing 21 n y C11 C12 6TE doub 22 n y C4 H2 6TE sing 23 n n N2 H11 6TE sing 24 n n C6 H12 6TE sing 25 n n C6 H13 6TE sing 26 n n C6 H14 6TE sing 27 n n C8 H15 6TE sing 28 n n N5 H3 6TE sing 29 n n C1 H4 6TE sing 30 n n C1 H5 6TE sing 31 n n C1 H6 6TE sing 32 n n C2 H1 6TE sing 33 n n C3 H7 6TE sing 34 n n C3 H8 6TE sing 35 n n C5 H9 6TE sing 36 n n C5 H10 6TE sing 37 n n C11 H16 6TE sing 38 n n C12 H17 6TE sing 39 n n # _atom_sites.entry_id 5KHX _atom_sites.fract_transf_matrix[1][1] 0.021622 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011325 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00681 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6TE A 1 4000 4000 6TE PFE . C 3 HOH A 1 4101 95 HOH HOH . C 3 HOH A 2 4102 94 HOH HOH . C 3 HOH A 3 4103 98 HOH HOH . C 3 HOH A 4 4104 8 HOH HOH . C 3 HOH A 5 4105 11 HOH HOH . C 3 HOH A 6 4106 54 HOH HOH . C 3 HOH A 7 4107 89 HOH HOH . C 3 HOH A 8 4108 3 HOH HOH . C 3 HOH A 9 4109 90 HOH HOH . C 3 HOH A 10 4110 56 HOH HOH . C 3 HOH A 11 4111 97 HOH HOH . C 3 HOH A 12 4112 96 HOH HOH . C 3 HOH A 13 4113 27 HOH HOH . C 3 HOH A 14 4114 10 HOH HOH . C 3 HOH A 15 4115 58 HOH HOH . C 3 HOH A 16 4116 57 HOH HOH . C 3 HOH A 17 4117 5 HOH HOH . C 3 HOH A 18 4118 1 HOH HOH . C 3 HOH A 19 4119 19 HOH HOH . C 3 HOH A 20 4120 2 HOH HOH . C 3 HOH A 21 4121 55 HOH HOH . C 3 HOH A 22 4122 42 HOH HOH . C 3 HOH A 23 4123 24 HOH HOH . C 3 HOH A 24 4124 61 HOH HOH . C 3 HOH A 25 4125 25 HOH HOH . C 3 HOH A 26 4126 17 HOH HOH . C 3 HOH A 27 4127 76 HOH HOH . C 3 HOH A 28 4128 26 HOH HOH . C 3 HOH A 29 4129 88 HOH HOH . C 3 HOH A 30 4130 49 HOH HOH . C 3 HOH A 31 4131 46 HOH HOH . C 3 HOH A 32 4132 87 HOH HOH . C 3 HOH A 33 4133 39 HOH HOH . C 3 HOH A 34 4134 73 HOH HOH . C 3 HOH A 35 4135 35 HOH HOH . C 3 HOH A 36 4136 38 HOH HOH . C 3 HOH A 37 4137 21 HOH HOH . C 3 HOH A 38 4138 43 HOH HOH . C 3 HOH A 39 4139 6 HOH HOH . C 3 HOH A 40 4140 15 HOH HOH . C 3 HOH A 41 4141 92 HOH HOH . C 3 HOH A 42 4142 59 HOH HOH . C 3 HOH A 43 4143 22 HOH HOH . C 3 HOH A 44 4144 68 HOH HOH . C 3 HOH A 45 4145 62 HOH HOH . C 3 HOH A 46 4146 83 HOH HOH . C 3 HOH A 47 4147 4 HOH HOH . C 3 HOH A 48 4148 12 HOH HOH . C 3 HOH A 49 4149 7 HOH HOH . C 3 HOH A 50 4150 28 HOH HOH . C 3 HOH A 51 4151 51 HOH HOH . C 3 HOH A 52 4152 86 HOH HOH . C 3 HOH A 53 4153 33 HOH HOH . C 3 HOH A 54 4154 67 HOH HOH . C 3 HOH A 55 4155 72 HOH HOH . C 3 HOH A 56 4156 29 HOH HOH . C 3 HOH A 57 4157 36 HOH HOH . C 3 HOH A 58 4158 37 HOH HOH . C 3 HOH A 59 4159 77 HOH HOH . C 3 HOH A 60 4160 47 HOH HOH . C 3 HOH A 61 4161 32 HOH HOH . C 3 HOH A 62 4162 48 HOH HOH . C 3 HOH A 63 4163 40 HOH HOH . C 3 HOH A 64 4164 9 HOH HOH . C 3 HOH A 65 4165 44 HOH HOH . C 3 HOH A 66 4166 18 HOH HOH . C 3 HOH A 67 4167 91 HOH HOH . C 3 HOH A 68 4168 66 HOH HOH . C 3 HOH A 69 4169 64 HOH HOH . C 3 HOH A 70 4170 41 HOH HOH . C 3 HOH A 71 4171 13 HOH HOH . C 3 HOH A 72 4172 14 HOH HOH . C 3 HOH A 73 4173 53 HOH HOH . C 3 HOH A 74 4174 71 HOH HOH . C 3 HOH A 75 4175 16 HOH HOH . C 3 HOH A 76 4176 30 HOH HOH . C 3 HOH A 77 4177 74 HOH HOH . C 3 HOH A 78 4178 79 HOH HOH . C 3 HOH A 79 4179 63 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N3 6TE . . . B 2 13.957 16.309 -13.234 1 37.22 ? N3 6TE 4000 A 1 HETATM 2 C C4 6TE . . . B 2 9.945 13.711 -16.403 1 37.81 ? C4 6TE 4000 A 1 HETATM 3 N N2 6TE . . . B 2 10.177 13.321 -17.777 1 38.06 ? N2 6TE 4000 A 1 HETATM 4 C C7 6TE . . . B 2 12.745 15.661 -13.29 1 38.19 ? C7 6TE 4000 A 1 HETATM 5 C C6 6TE . . . B 2 8.574 14.843 -19.148 1 36.6 ? C6 6TE 4000 A 1 HETATM 6 C C9 6TE . . . B 2 12.653 15.81 -10.884 1 36.08 ? C9 6TE 4000 A 1 HETATM 7 C C8 6TE . . . B 2 14.422 16.656 -11.996 1 36.68 ? C8 6TE 4000 A 1 HETATM 8 N N5 6TE . . . B 2 11.845 15.44 -9.819 1 35.99 ? N5 6TE 4000 A 1 HETATM 9 C C1 6TE . . . B 2 13.274 15.442 -15.685 1 41.89 ? C1 6TE 4000 A 1 HETATM 10 N N1 6TE . . . B 2 12.333 15.296 -14.563 1 39.47 ? N1 6TE 4000 A 1 HETATM 11 C C2 6TE . . . B 2 11.028 14.726 -14.811 1 38.65 ? C2 6TE 4000 A 1 HETATM 12 C C3 6TE . . . B 2 10.266 15.201 -16.076 1 37.78 ? C3 6TE 4000 A 1 HETATM 13 C C5 6TE . . . B 2 10.984 13.26 -15.34 1 32.83 ? C5 6TE 4000 A 1 HETATM 14 S S1 6TE . . . B 2 8.969 13.244 -18.879 1 37.93 ? S1 6TE 4000 A 1 HETATM 15 O O1 6TE . . . B 2 7.839 12.625 -18.287 1 44.47 ? O1 6TE 4000 A 1 HETATM 16 O O2 6TE . . . B 2 9.544 12.705 -20.059 1 38.57 ? O2 6TE 4000 A 1 HETATM 17 N N4 6TE . . . B 2 13.865 16.454 -10.785 1 35.51 ? N4 6TE 4000 A 1 HETATM 18 C C10 6TE . . . B 2 12.025 15.386 -12.098 1 36.34 ? C10 6TE 4000 A 1 HETATM 19 C C11 6TE . . . B 2 10.809 14.736 -11.713 1 31.79 ? C11 6TE 4000 A 1 HETATM 20 C C12 6TE . . . B 2 10.72 14.777 -10.338 1 34.02 ? C12 6TE 4000 A 1 HETATM 21 H H2 6TE . . . B 2 8.905 13.425 -16.098 0 37.42 ? H2 6TE 4000 A 1 HETATM 22 H H11 6TE . . . B 2 11.16 13.15 -17.995 0 38.19 ? H11 6TE 4000 A 1 HETATM 23 H H12 6TE . . . B 2 7.52 15.029 -19.435 0 36.92 ? H12 6TE 4000 A 1 HETATM 24 H H13 6TE . . . B 2 8.688 15.556 -18.313 0 37.06 ? H13 6TE 4000 A 1 HETATM 25 H H14 6TE . . . B 2 9.113 15.344 -19.972 0 37.58 ? H14 6TE 4000 A 1 HETATM 26 H H15 6TE . . . B 2 15.392 17.181 -12.008 0 37.69 ? H15 6TE 4000 A 1 HETATM 27 H H3 6TE . . . B 2 12.045 15.613 -8.846 0 36.43 ? H3 6TE 4000 A 1 HETATM 28 H H4 6TE . . . B 2 13.4 16.502 -15.973 0 43.18 ? H4 6TE 4000 A 1 HETATM 29 H H5 6TE . . . B 2 12.94 14.889 -16.579 0 41.37 ? H5 6TE 4000 A 1 HETATM 30 H H6 6TE . . . B 2 14.28 15.051 -15.439 0 41.64 ? H6 6TE 4000 A 1 HETATM 31 H H1 6TE . . . B 2 10.359 14.856 -13.924 0 38.6 ? H1 6TE 4000 A 1 HETATM 32 H H7 6TE . . . B 2 9.395 15.843 -15.88 0 38.32 ? H7 6TE 4000 A 1 HETATM 33 H H8 6TE . . . B 2 10.857 15.739 -16.834 0 38.58 ? H8 6TE 4000 A 1 HETATM 34 H H9 6TE . . . B 2 11.934 12.862 -15.729 0 32.77 ? H9 6TE 4000 A 1 HETATM 35 H H10 6TE . . . B 2 10.625 12.51 -14.618 0 32.09 ? H10 6TE 4000 A 1 HETATM 36 H H16 6TE . . . B 2 10.087 14.276 -12.376 0 31.27 ? H16 6TE 4000 A 1 HETATM 37 H H17 6TE . . . B 2 9.943 14.386 -9.686 0 33.82 ? H17 6TE 4000 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 31 _model_server_stats.element_count 37 #