data_5KIC # _model_server_result.job_id KnS68DFNf_Q4wpC0kfZKBg _model_server_result.datetime_utc '2024-11-25 21:27:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kic # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":202}' # _entry.id 5KIC # _exptl.entry_id 5KIC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 750.712 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N,N'-butane-1,4-diylbis[1-hydroxy-N-(3-{[(1-hydroxy-6-oxo-1,6-dihydropyridin-2-yl)carbonyl]amino}propyl)-6-oxo-1,6-dihydropyridine-2-carboxamide]" _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KIC _cell.length_a 119.574 _cell.length_b 119.574 _cell.length_c 108.839 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KIC _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,P 1 1 B,G,H,I,Q 2 1 C,J,K,L,M,N,O,R 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N ? 3 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 78 A CYS 76 1_555 A SG CYS 177 A CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? disulf ? disulf2 B SG CYS 78 B CYS 76 1_555 B SG CYS 177 B CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? disulf ? disulf3 C SG CYS 78 C CYS 76 1_555 C SG CYS 177 C CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? # _chem_comp.formula 'C34 H38 N8 O12' _chem_comp.formula_weight 750.712 _chem_comp.id 4OL _chem_comp.mon_nstd_flag . _chem_comp.name "N,N'-butane-1,4-diylbis[1-hydroxy-N-(3-{[(1-hydroxy-6-oxo-1,6-dihydropyridin-2-yl)carbonyl]amino}propyl)-6-oxo-1,6-dihydropyridine-2-carboxamide]" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O55 C28 4OL doub 1 n n C18 C17 4OL sing 2 n n C18 C19 4OL sing 3 n n C20 C19 4OL sing 4 n n C20 N21 4OL sing 5 n n C17 N15 4OL sing 6 n n C28 N21 4OL sing 7 n n C28 C34 4OL sing 8 n n N21 C29 4OL sing 9 n n C39 C34 4OL doub 10 n n C39 C38 4OL sing 11 n n N15 C14 4OL sing 12 n n N15 C16 4OL sing 13 n n C34 N35 4OL sing 14 n n C14 C13 4OL sing 15 n n C13 C12 4OL sing 16 n n C30 C29 4OL sing 17 n n C30 C31 4OL sing 18 n n O54 C16 4OL doub 19 n n C12 N9 4OL sing 20 n n C38 C37 4OL doub 21 n n C16 C22 4OL sing 22 n n N35 O46 4OL sing 23 n n N35 C36 4OL sing 24 n n C31 N32 4OL sing 25 n n N9 C1 4OL sing 26 n n C37 C36 4OL sing 27 n n C22 C23 4OL doub 28 n n C22 N27 4OL sing 29 n n C36 O47 4OL doub 30 n n C23 C24 4OL sing 31 n n O48 N27 4OL sing 32 n n N32 C33 4OL sing 33 n n C1 O8 4OL doub 34 n n C1 C2 4OL sing 35 n n N27 C26 4OL sing 36 n n O10 N3 4OL sing 37 n n O50 N45 4OL sing 38 n n C33 O53 4OL doub 39 n n C33 C40 4OL sing 40 n n C24 C25 4OL doub 41 n n C2 N3 4OL sing 42 n n C2 C7 4OL doub 43 n n N3 C4 4OL sing 44 n n C26 C25 4OL sing 45 n n C26 O49 4OL doub 46 n n N45 C40 4OL sing 47 n n N45 C44 4OL sing 48 n n C40 C41 4OL doub 49 n n C7 C6 4OL sing 50 n n C4 O9 4OL doub 51 n n C4 C5 4OL sing 52 n n O51 C44 4OL doub 53 n n C44 C43 4OL sing 54 n n C41 C42 4OL sing 55 n n C6 C5 4OL doub 56 n n C43 C42 4OL doub 57 n n C6 H1 4OL sing 58 n n C5 H2 4OL sing 59 n n C7 H3 4OL sing 60 n n C12 H4 4OL sing 61 n n C12 H5 4OL sing 62 n n C13 H6 4OL sing 63 n n C13 H7 4OL sing 64 n n C14 H8 4OL sing 65 n n C14 H9 4OL sing 66 n n C17 H10 4OL sing 67 n n C17 H11 4OL sing 68 n n C18 H12 4OL sing 69 n n C18 H13 4OL sing 70 n n C20 H14 4OL sing 71 n n C20 H15 4OL sing 72 n n C23 H16 4OL sing 73 n n C24 H17 4OL sing 74 n n C25 H18 4OL sing 75 n n C39 H19 4OL sing 76 n n C38 H20 4OL sing 77 n n C37 H21 4OL sing 78 n n O46 H22 4OL sing 79 n n C29 H23 4OL sing 80 n n C29 H24 4OL sing 81 n n C30 H25 4OL sing 82 n n C30 H26 4OL sing 83 n n C31 H27 4OL sing 84 n n C31 H28 4OL sing 85 n n N32 H29 4OL sing 86 n n O50 H30 4OL sing 87 n n C43 H31 4OL sing 88 n n C42 H32 4OL sing 89 n n C41 H33 4OL sing 90 n n C19 H34 4OL sing 91 n n C19 H35 4OL sing 92 n n O48 H36 4OL sing 93 n n N9 H37 4OL sing 94 n n O10 H38 4OL sing 95 n n # _atom_sites.entry_id 5KIC _atom_sites.fract_transf_matrix[1][1] 0.008363 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008363 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009188 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 CF A 1 201 300 CF CF . E 3 4OL A 1 202 301 4OL HOP . F 4 CL A 1 203 1 CL CL . G 2 CF B 1 201 300 CF CF . H 3 4OL B 1 202 301 4OL HOP . I 4 CL B 1 203 3 CL CL . J 2 CF C 1 201 300 CF CF . K 3 4OL C 1 202 301 4OL HOP . L 4 CL C 1 203 2 CL CL . M 5 SO4 C 1 204 1 SO4 SO4 . N 5 SO4 C 1 205 2 SO4 SO4 . O 5 SO4 C 1 206 3 SO4 SO4 . P 6 HOH A 1 301 8 HOH HOH . P 6 HOH A 2 302 15 HOH HOH . P 6 HOH A 3 303 7 HOH HOH . P 6 HOH A 4 304 13 HOH HOH . P 6 HOH A 5 305 21 HOH HOH . P 6 HOH A 6 306 24 HOH HOH . P 6 HOH A 7 307 16 HOH HOH . P 6 HOH A 8 308 32 HOH HOH . P 6 HOH A 9 309 38 HOH HOH . P 6 HOH A 10 310 41 HOH HOH . P 6 HOH A 11 311 4 HOH HOH . P 6 HOH A 12 312 17 HOH HOH . Q 6 HOH B 1 301 9 HOH HOH . Q 6 HOH B 2 302 31 HOH HOH . Q 6 HOH B 3 303 39 HOH HOH . Q 6 HOH B 4 304 10 HOH HOH . Q 6 HOH B 5 305 29 HOH HOH . Q 6 HOH B 6 306 40 HOH HOH . Q 6 HOH B 7 307 37 HOH HOH . Q 6 HOH B 8 308 27 HOH HOH . Q 6 HOH B 9 309 6 HOH HOH . Q 6 HOH B 10 310 3 HOH HOH . R 6 HOH C 1 301 26 HOH HOH . R 6 HOH C 2 302 20 HOH HOH . R 6 HOH C 3 303 30 HOH HOH . R 6 HOH C 4 304 34 HOH HOH . R 6 HOH C 5 305 14 HOH HOH . R 6 HOH C 6 306 43 HOH HOH . R 6 HOH C 7 307 19 HOH HOH . R 6 HOH C 8 308 35 HOH HOH . R 6 HOH C 9 309 36 HOH HOH . R 6 HOH C 10 310 28 HOH HOH . R 6 HOH C 11 311 11 HOH HOH . R 6 HOH C 12 312 42 HOH HOH . R 6 HOH C 13 313 33 HOH HOH . R 6 HOH C 14 314 23 HOH HOH . R 6 HOH C 15 315 25 HOH HOH . R 6 HOH C 16 316 12 HOH HOH . R 6 HOH C 17 317 18 HOH HOH . R 6 HOH C 18 318 22 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 4OL . . . H 3 58.974 105.854 42.184 1 92.7 ? C1 4OL 202 B 1 HETATM 2 C C2 4OL . . . H 3 60.189 105.539 41.35 1 89.55 ? C2 4OL 202 B 1 HETATM 3 C C6 4OL . . . H 3 62.407 104.596 41.117 1 80.03 ? C6 4OL 202 B 1 HETATM 4 C C5 4OL . . . H 3 62.455 104.986 39.785 1 83.21 ? C5 4OL 202 B 1 HETATM 5 C C4 4OL . . . H 3 61.391 105.654 39.208 1 80.87 ? C4 4OL 202 B 1 HETATM 6 C C7 4OL . . . H 3 61.285 104.867 41.899 1 86.65 ? C7 4OL 202 B 1 HETATM 7 C C12 4OL . . . H 3 56.523 106.223 42.364 1 109.51 ? C12 4OL 202 B 1 HETATM 8 C C13 4OL . . . H 3 56.217 107.703 42.575 1 115.25 ? C13 4OL 202 B 1 HETATM 9 C C14 4OL . . . H 3 55.972 108.391 41.231 1 120.76 ? C14 4OL 202 B 1 HETATM 10 C C16 4OL . . . H 3 56.556 110.747 41.443 1 131.17 ? C16 4OL 202 B 1 HETATM 11 C C17 4OL . . . H 3 54.194 110.122 41.669 1 114.88 ? C17 4OL 202 B 1 HETATM 12 C C18 4OL . . . H 3 53.402 110.005 40.36 1 110.97 ? C18 4OL 202 B 1 HETATM 13 C C20 4OL . . . H 3 52.899 111.082 38.07 1 109.68 ? C20 4OL 202 B 1 HETATM 14 C C23 4OL . . . H 3 57.053 111.62 43.737 1 151.06 ? C23 4OL 202 B 1 HETATM 15 C C24 4OL . . . H 3 57.875 111.74 44.864 1 150.88 ? C24 4OL 202 B 1 HETATM 16 C C25 4OL . . . H 3 59.116 111.094 44.9 1 151.2 ? C25 4OL 202 B 1 HETATM 17 C C26 4OL . . . H 3 59.541 110.321 43.81 1 143.73 ? C26 4OL 202 B 1 HETATM 18 O O55 4OL . . . H 3 52.845 108.358 37.571 1 97.16 ? O55 4OL 202 B 1 HETATM 19 C C28 4OL . . . H 3 53.738 109.003 37.033 1 104.17 ? C28 4OL 202 B 1 HETATM 20 C C34 4OL . . . H 3 54.588 108.168 36.107 1 102.86 ? C34 4OL 202 B 1 HETATM 21 C C39 4OL . . . H 3 53.99 107.599 34.984 1 101.55 ? C39 4OL 202 B 1 HETATM 22 C C38 4OL . . . H 3 54.723 106.799 34.108 1 99.01 ? C38 4OL 202 B 1 HETATM 23 C C37 4OL . . . H 3 56.067 106.537 34.329 1 93.67 ? C37 4OL 202 B 1 HETATM 24 C C36 4OL . . . H 3 56.692 107.085 35.434 1 96.05 ? C36 4OL 202 B 1 HETATM 25 O O47 4OL . . . H 3 57.898 106.819 35.589 1 90.05 ? O47 4OL 202 B 1 HETATM 26 N N35 4OL . . . H 3 55.956 107.905 36.345 1 102.02 ? N35 4OL 202 B 1 HETATM 27 O O46 4OL . . . H 3 56.573 108.468 37.507 1 113.98 ? O46 4OL 202 B 1 HETATM 28 N N21 4OL . . . H 3 53.902 110.329 37.289 1 107.64 ? N21 4OL 202 B 1 HETATM 29 C C29 4OL . . . H 3 55.052 111.153 36.88 1 103.35 ? C29 4OL 202 B 1 HETATM 30 C C30 4OL . . . H 3 55.121 111.283 35.362 1 104.32 ? C30 4OL 202 B 1 HETATM 31 C C31 4OL . . . H 3 56.1 112.386 34.964 1 106.99 ? C31 4OL 202 B 1 HETATM 32 N N32 4OL . . . H 3 57.473 112.097 35.359 1 104.34 ? N32 4OL 202 B 1 HETATM 33 C C33 4OL . . . H 3 58.491 112.938 35.137 1 103.9 ? C33 4OL 202 B 1 HETATM 34 O O53 4OL . . . H 3 58.326 114.003 34.567 1 106.99 ? O53 4OL 202 B 1 HETATM 35 C C40 4OL . . . H 3 59.891 112.564 35.565 1 107.81 ? C40 4OL 202 B 1 HETATM 36 N N45 4OL . . . H 3 60.216 111.209 35.802 1 105.33 ? N45 4OL 202 B 1 HETATM 37 O O50 4OL . . . H 3 59.186 110.228 35.646 1 109.92 ? O50 4OL 202 B 1 HETATM 38 C C44 4OL . . . H 3 61.526 110.828 36.191 1 104.52 ? C44 4OL 202 B 1 HETATM 39 O O51 4OL . . . H 3 61.809 109.632 36.396 1 91.86 ? O51 4OL 202 B 1 HETATM 40 C C43 4OL . . . H 3 62.509 111.801 36.347 1 109.96 ? C43 4OL 202 B 1 HETATM 41 C C42 4OL . . . H 3 62.191 113.143 36.113 1 116.14 ? C42 4OL 202 B 1 HETATM 42 C C41 4OL . . . H 3 60.897 113.526 35.724 1 114.45 ? C41 4OL 202 B 1 HETATM 43 C C19 4OL . . . H 3 53.403 111.282 39.513 1 111.1 ? C19 4OL 202 B 1 HETATM 44 N N15 4OL . . . H 3 55.61 109.801 41.444 1 123.23 ? N15 4OL 202 B 1 HETATM 45 O O54 4OL . . . H 3 56.719 111.521 40.511 1 126.45 ? O54 4OL 202 B 1 HETATM 46 C C22 4OL . . . H 3 57.464 110.856 42.635 1 141.26 ? C22 4OL 202 B 1 HETATM 47 N N27 4OL . . . H 3 58.725 110.189 42.663 1 138.29 ? N27 4OL 202 B 1 HETATM 48 O O48 4OL . . . H 3 59.202 109.382 41.57 1 114.05 ? O48 4OL 202 B 1 HETATM 49 O O49 4OL . . . H 3 60.645 109.743 43.838 1 140.19 ? O49 4OL 202 B 1 HETATM 50 N N9 4OL . . . H 3 57.76 105.98 41.624 1 102.53 ? N9 4OL 202 B 1 HETATM 51 O O8 4OL . . . H 3 59.156 106 43.375 1 97.33 ? O8 4OL 202 B 1 HETATM 52 N N3 4OL . . . H 3 60.248 105.931 39.997 1 87.08 ? N3 4OL 202 B 1 HETATM 53 O O9 4OL . . . H 3 61.476 105.979 38 1 75.67 ? O9 4OL 202 B 1 HETATM 54 O O10 4OL . . . H 3 59.122 106.616 39.438 1 110.78 ? O10 4OL 202 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 54 #