data_5KID # _model_server_result.job_id cvzeyOVAmHt9Zq-8wUvS8Q _model_server_result.datetime_utc '2024-11-08 17:41:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kid # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":207}' # _entry.id 5KID # _exptl.entry_id 5KID _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KID _cell.length_a 115.547 _cell.length_b 115.547 _cell.length_c 118.028 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KID _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,I,J,Q 1 1 B,K,L,R 2 1 C,M,N,O,P,S 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 I N N ? 6 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 78 A CYS 76 1_555 A SG CYS 177 A CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? disulf ? disulf2 B SG CYS 78 B CYS 76 1_555 B SG CYS 177 B CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? disulf ? disulf3 C SG CYS 78 C CYS 76 1_555 C SG CYS 177 C CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 228 n n C1 C2 GOL sing 229 n n C1 H11 GOL sing 230 n n C1 H12 GOL sing 231 n n O1 HO1 GOL sing 232 n n C2 O2 GOL sing 233 n n C2 C3 GOL sing 234 n n C2 H2 GOL sing 235 n n O2 HO2 GOL sing 236 n n C3 O3 GOL sing 237 n n C3 H31 GOL sing 238 n n C3 H32 GOL sing 239 n n O3 HO3 GOL sing 240 n n # _atom_sites.entry_id 5KID _atom_sites.fract_transf_matrix[1][1] 0.008654 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008654 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008473 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 TH A 1 201 300 TH TH . E 3 7K9 A 1 202 301 7K9 CAM . F 4 SO4 A 1 203 2 SO4 SO4 . G 4 SO4 A 1 204 3 SO4 SO4 . H 5 CL A 1 205 2 CL CL . I 6 GOL A 1 206 1 GOL GOL . J 6 GOL A 1 207 2 GOL GOL . K 2 TH B 1 300 300 TH TH . L 3 7K9 B 1 301 301 7K9 CAM . M 2 TH C 1 201 300 TH TH . N 3 7K9 C 1 202 301 7K9 CAM . O 4 SO4 C 1 203 4 SO4 SO4 . P 5 CL C 1 204 1 CL CL . Q 7 HOH A 1 301 44 HOH HOH . Q 7 HOH A 2 302 82 HOH HOH . Q 7 HOH A 3 303 51 HOH HOH . Q 7 HOH A 4 304 69 HOH HOH . Q 7 HOH A 5 305 80 HOH HOH . Q 7 HOH A 6 306 37 HOH HOH . Q 7 HOH A 7 307 16 HOH HOH . Q 7 HOH A 8 308 10 HOH HOH . Q 7 HOH A 9 309 42 HOH HOH . Q 7 HOH A 10 310 9 HOH HOH . Q 7 HOH A 11 311 71 HOH HOH . Q 7 HOH A 12 312 62 HOH HOH . Q 7 HOH A 13 313 72 HOH HOH . Q 7 HOH A 14 314 76 HOH HOH . Q 7 HOH A 15 315 20 HOH HOH . Q 7 HOH A 16 316 55 HOH HOH . Q 7 HOH A 17 317 31 HOH HOH . Q 7 HOH A 18 318 13 HOH HOH . Q 7 HOH A 19 319 60 HOH HOH . Q 7 HOH A 20 320 88 HOH HOH . R 7 HOH B 1 401 47 HOH HOH . R 7 HOH B 2 402 57 HOH HOH . R 7 HOH B 3 403 66 HOH HOH . R 7 HOH B 4 404 39 HOH HOH . R 7 HOH B 5 405 36 HOH HOH . R 7 HOH B 6 406 83 HOH HOH . R 7 HOH B 7 407 52 HOH HOH . S 7 HOH C 1 301 22 HOH HOH . S 7 HOH C 2 302 50 HOH HOH . S 7 HOH C 3 303 27 HOH HOH . S 7 HOH C 4 304 45 HOH HOH . S 7 HOH C 5 305 78 HOH HOH . S 7 HOH C 6 306 29 HOH HOH . S 7 HOH C 7 307 65 HOH HOH . S 7 HOH C 8 308 58 HOH HOH . S 7 HOH C 9 309 21 HOH HOH . S 7 HOH C 10 310 54 HOH HOH . S 7 HOH C 11 311 15 HOH HOH . S 7 HOH C 12 312 75 HOH HOH . S 7 HOH C 13 313 28 HOH HOH . S 7 HOH C 14 314 18 HOH HOH . S 7 HOH C 15 315 5 HOH HOH . S 7 HOH C 16 316 53 HOH HOH . S 7 HOH C 17 317 8 HOH HOH . S 7 HOH C 18 318 7 HOH HOH . S 7 HOH C 19 319 79 HOH HOH . S 7 HOH C 20 320 23 HOH HOH . S 7 HOH C 21 321 3 HOH HOH . S 7 HOH C 22 322 12 HOH HOH . S 7 HOH C 23 323 14 HOH HOH . S 7 HOH C 24 324 48 HOH HOH . S 7 HOH C 25 325 46 HOH HOH . S 7 HOH C 26 326 61 HOH HOH . S 7 HOH C 27 327 59 HOH HOH . S 7 HOH C 28 328 34 HOH HOH . S 7 HOH C 29 329 81 HOH HOH . S 7 HOH C 30 330 11 HOH HOH . S 7 HOH C 31 331 89 HOH HOH . S 7 HOH C 32 332 33 HOH HOH . S 7 HOH C 33 333 64 HOH HOH . S 7 HOH C 34 334 90 HOH HOH . S 7 HOH C 35 335 32 HOH HOH . S 7 HOH C 36 336 63 HOH HOH . S 7 HOH C 37 337 73 HOH HOH . S 7 HOH C 38 338 77 HOH HOH . S 7 HOH C 39 339 24 HOH HOH . S 7 HOH C 40 340 85 HOH HOH . S 7 HOH C 41 341 56 HOH HOH . S 7 HOH C 42 342 19 HOH HOH . S 7 HOH C 43 343 26 HOH HOH . S 7 HOH C 44 344 87 HOH HOH . S 7 HOH C 45 345 25 HOH HOH . S 7 HOH C 46 346 70 HOH HOH . S 7 HOH C 47 347 6 HOH HOH . S 7 HOH C 48 348 86 HOH HOH . S 7 HOH C 49 349 49 HOH HOH . S 7 HOH C 50 350 30 HOH HOH . S 7 HOH C 51 351 35 HOH HOH . S 7 HOH C 52 352 74 HOH HOH . S 7 HOH C 53 353 17 HOH HOH . S 7 HOH C 54 354 84 HOH HOH . S 7 HOH C 55 355 41 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . J 6 34.955 66.279 38.906 1 73.16 ? C1 GOL 207 A 1 HETATM 2 O O1 GOL . . . J 6 34.199 65.597 39.915 1 66.19 ? O1 GOL 207 A 1 HETATM 3 C C2 GOL . . . J 6 35.022 67.798 39.145 1 74.58 ? C2 GOL 207 A 1 HETATM 4 O O2 GOL . . . J 6 33.832 68.304 39.774 1 76.05 ? O2 GOL 207 A 1 HETATM 5 C C3 GOL . . . J 6 36.241 68.137 39.998 1 77.07 ? C3 GOL 207 A 1 HETATM 6 O O3 GOL . . . J 6 36.025 69.347 40.728 1 82.3 ? O3 GOL 207 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 33 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #