data_5KID
#
_model_server_result.job_id            fIaDkCLEl-GRnE0HGd-Qig 
_model_server_result.datetime_utc      '2024-11-08 18:09:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5kid 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":301}' 
#
_entry.id    5KID 
#
_exptl.entry_id    5KID 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              746.76 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "N,N'-(butane-1,4-diyl)bis(N-{3-[(2,3-dihydroxybenzene-1-carbonyl)amino]propyl}-2,3-dihydroxybenzamide)" 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5KID 
_cell.length_a            115.547 
_cell.length_b            115.547 
_cell.length_c            118.028 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5KID 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,G,H,I,J,Q 1 1 
B,K,L,R 2 1 
C,M,N,O,P,S 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 L N N 
? 3 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 78 A CYS 76 1_555 A SG CYS 177 A CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? 
disulf ? disulf2 B SG CYS 78 B CYS 76 1_555 B SG CYS 177 B CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? 
disulf ? disulf3 C SG CYS 78 C CYS 76 1_555 C SG CYS 177 C CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? 
#
_chem_comp.formula           'C38 H42 N4 O12' 
_chem_comp.formula_weight    746.76 
_chem_comp.id                7K9 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "N,N'-(butane-1,4-diyl)bis(N-{3-[(2,3-dihydroxybenzene-1-carbonyl)amino]propyl}-2,3-dihydroxybenzamide)" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O53 C33 7K9 doub 1 n n 
C31 C30 7K9 sing 2 n n 
C31 N32 7K9 sing 3 n n 
C30 C29 7K9 sing 4 n n 
C33 N32 7K9 sing 5 n n 
C33 C40 7K9 sing 6 n n 
C40 C41 7K9 doub 7 n y 
C40 C45 7K9 sing 8 n y 
C41 C42 7K9 sing 9 n y 
O50 C45 7K9 sing 10 n n 
C45 C44 7K9 doub 11 n y 
C42 C43 7K9 doub 12 n y 
C44 C43 7K9 sing 13 n y 
C44 O51 7K9 sing 14 n n 
C29 H1 7K9 sing 15 n n 
C30 H4 7K9 sing 16 n n 
C31 H6 7K9 sing 17 n n 
N32 H8 7K9 sing 18 n n 
O50 H13 7K9 sing 19 n n 
C29 N1 7K9 sing 20 n n 
N1 C2 7K9 sing 21 n n 
C2 C3 7K9 sing 22 n n 
N1 C4 7K9 sing 23 n n 
C4 C5 7K9 sing 24 n n 
C5 C6 7K9 sing 25 n n 
C6 C7 7K9 sing 26 n n 
C7 N2 7K9 sing 27 n n 
N2 C9 7K9 sing 28 n n 
C9 C10 7K9 sing 29 n n 
N2 C11 7K9 sing 30 n n 
C11 C12 7K9 sing 31 n n 
C12 C13 7K9 sing 32 n n 
C13 N3 7K9 sing 33 n n 
N3 C15 7K9 sing 34 n n 
C15 C16 7K9 sing 35 n n 
C3 C1 7K9 sing 36 n y 
C1 C8 7K9 doub 37 n y 
C8 C14 7K9 sing 38 n y 
C14 C17 7K9 doub 39 n y 
C17 C18 7K9 sing 40 n y 
C18 C3 7K9 doub 41 n y 
C16 C19 7K9 sing 42 n y 
C19 C20 7K9 doub 43 n y 
C20 C21 7K9 sing 44 n y 
C21 C22 7K9 doub 45 n y 
C22 C23 7K9 sing 46 n y 
C23 C16 7K9 doub 47 n y 
C2 O1 7K9 doub 48 n n 
C15 O3 7K9 doub 49 n n 
C9 O2 7K9 doub 50 n n 
C10 C24 7K9 sing 51 n y 
C24 C25 7K9 doub 52 n y 
C25 C26 7K9 sing 53 n y 
C26 C27 7K9 doub 54 n y 
C27 C28 7K9 sing 55 n y 
C28 C10 7K9 doub 56 n y 
C18 O4 7K9 sing 57 n n 
C17 O5 7K9 sing 58 n n 
C23 O6 7K9 sing 59 n n 
C22 O7 7K9 sing 60 n n 
C4 H12 7K9 sing 61 n n 
C4 H14 7K9 sing 62 n n 
C5 H15 7K9 sing 63 n n 
C5 H16 7K9 sing 64 n n 
C6 H17 7K9 sing 65 n n 
C6 H18 7K9 sing 66 n n 
C7 H19 7K9 sing 67 n n 
C7 H20 7K9 sing 68 n n 
C11 H21 7K9 sing 69 n n 
C11 H22 7K9 sing 70 n n 
C12 H23 7K9 sing 71 n n 
C12 H24 7K9 sing 72 n n 
C13 H25 7K9 sing 73 n n 
C13 H26 7K9 sing 74 n n 
N3 H27 7K9 sing 75 n n 
C1 H28 7K9 sing 76 n n 
C8 H29 7K9 sing 77 n n 
C14 H30 7K9 sing 78 n n 
C19 H31 7K9 sing 79 n n 
C20 H32 7K9 sing 80 n n 
C21 H33 7K9 sing 81 n n 
C24 H34 7K9 sing 82 n n 
C25 H35 7K9 sing 83 n n 
C26 H36 7K9 sing 84 n n 
O4 H39 7K9 sing 85 n n 
O5 H40 7K9 sing 86 n n 
O6 H41 7K9 sing 87 n n 
O7 H42 7K9 sing 88 n n 
C28 O8 7K9 sing 89 n n 
O8 H38 7K9 sing 90 n n 
C27 O9 7K9 sing 91 n n 
C29 H2 7K9 sing 92 n n 
C30 H3 7K9 sing 93 n n 
C31 H9 7K9 sing 94 n n 
C41 H5 7K9 sing 95 n n 
C42 H7 7K9 sing 96 n n 
C43 H10 7K9 sing 97 n n 
O51 H11 7K9 sing 98 n n 
O9 H37 7K9 sing 99 n n 
#
_atom_sites.entry_id                     5KID 
_atom_sites.fract_transf_matrix[1][1]    0.008654 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008654 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008473 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 TH A 1 201 300 TH TH . 
E 3 7K9 A 1 202 301 7K9 CAM . 
F 4 SO4 A 1 203 2 SO4 SO4 . 
G 4 SO4 A 1 204 3 SO4 SO4 . 
H 5 CL A 1 205 2 CL CL . 
I 6 GOL A 1 206 1 GOL GOL . 
J 6 GOL A 1 207 2 GOL GOL . 
K 2 TH B 1 300 300 TH TH . 
L 3 7K9 B 1 301 301 7K9 CAM . 
M 2 TH C 1 201 300 TH TH . 
N 3 7K9 C 1 202 301 7K9 CAM . 
O 4 SO4 C 1 203 4 SO4 SO4 . 
P 5 CL C 1 204 1 CL CL . 
Q 7 HOH A 1 301 44 HOH HOH . 
Q 7 HOH A 2 302 82 HOH HOH . 
Q 7 HOH A 3 303 51 HOH HOH . 
Q 7 HOH A 4 304 69 HOH HOH . 
Q 7 HOH A 5 305 80 HOH HOH . 
Q 7 HOH A 6 306 37 HOH HOH . 
Q 7 HOH A 7 307 16 HOH HOH . 
Q 7 HOH A 8 308 10 HOH HOH . 
Q 7 HOH A 9 309 42 HOH HOH . 
Q 7 HOH A 10 310 9 HOH HOH . 
Q 7 HOH A 11 311 71 HOH HOH . 
Q 7 HOH A 12 312 62 HOH HOH . 
Q 7 HOH A 13 313 72 HOH HOH . 
Q 7 HOH A 14 314 76 HOH HOH . 
Q 7 HOH A 15 315 20 HOH HOH . 
Q 7 HOH A 16 316 55 HOH HOH . 
Q 7 HOH A 17 317 31 HOH HOH . 
Q 7 HOH A 18 318 13 HOH HOH . 
Q 7 HOH A 19 319 60 HOH HOH . 
Q 7 HOH A 20 320 88 HOH HOH . 
R 7 HOH B 1 401 47 HOH HOH . 
R 7 HOH B 2 402 57 HOH HOH . 
R 7 HOH B 3 403 66 HOH HOH . 
R 7 HOH B 4 404 39 HOH HOH . 
R 7 HOH B 5 405 36 HOH HOH . 
R 7 HOH B 6 406 83 HOH HOH . 
R 7 HOH B 7 407 52 HOH HOH . 
S 7 HOH C 1 301 22 HOH HOH . 
S 7 HOH C 2 302 50 HOH HOH . 
S 7 HOH C 3 303 27 HOH HOH . 
S 7 HOH C 4 304 45 HOH HOH . 
S 7 HOH C 5 305 78 HOH HOH . 
S 7 HOH C 6 306 29 HOH HOH . 
S 7 HOH C 7 307 65 HOH HOH . 
S 7 HOH C 8 308 58 HOH HOH . 
S 7 HOH C 9 309 21 HOH HOH . 
S 7 HOH C 10 310 54 HOH HOH . 
S 7 HOH C 11 311 15 HOH HOH . 
S 7 HOH C 12 312 75 HOH HOH . 
S 7 HOH C 13 313 28 HOH HOH . 
S 7 HOH C 14 314 18 HOH HOH . 
S 7 HOH C 15 315 5 HOH HOH . 
S 7 HOH C 16 316 53 HOH HOH . 
S 7 HOH C 17 317 8 HOH HOH . 
S 7 HOH C 18 318 7 HOH HOH . 
S 7 HOH C 19 319 79 HOH HOH . 
S 7 HOH C 20 320 23 HOH HOH . 
S 7 HOH C 21 321 3 HOH HOH . 
S 7 HOH C 22 322 12 HOH HOH . 
S 7 HOH C 23 323 14 HOH HOH . 
S 7 HOH C 24 324 48 HOH HOH . 
S 7 HOH C 25 325 46 HOH HOH . 
S 7 HOH C 26 326 61 HOH HOH . 
S 7 HOH C 27 327 59 HOH HOH . 
S 7 HOH C 28 328 34 HOH HOH . 
S 7 HOH C 29 329 81 HOH HOH . 
S 7 HOH C 30 330 11 HOH HOH . 
S 7 HOH C 31 331 89 HOH HOH . 
S 7 HOH C 32 332 33 HOH HOH . 
S 7 HOH C 33 333 64 HOH HOH . 
S 7 HOH C 34 334 90 HOH HOH . 
S 7 HOH C 35 335 32 HOH HOH . 
S 7 HOH C 36 336 63 HOH HOH . 
S 7 HOH C 37 337 73 HOH HOH . 
S 7 HOH C 38 338 77 HOH HOH . 
S 7 HOH C 39 339 24 HOH HOH . 
S 7 HOH C 40 340 85 HOH HOH . 
S 7 HOH C 41 341 56 HOH HOH . 
S 7 HOH C 42 342 19 HOH HOH . 
S 7 HOH C 43 343 26 HOH HOH . 
S 7 HOH C 44 344 87 HOH HOH . 
S 7 HOH C 45 345 25 HOH HOH . 
S 7 HOH C 46 346 70 HOH HOH . 
S 7 HOH C 47 347 6 HOH HOH . 
S 7 HOH C 48 348 86 HOH HOH . 
S 7 HOH C 49 349 49 HOH HOH . 
S 7 HOH C 50 350 30 HOH HOH . 
S 7 HOH C 51 351 35 HOH HOH . 
S 7 HOH C 52 352 74 HOH HOH . 
S 7 HOH C 53 353 17 HOH HOH . 
S 7 HOH C 54 354 84 HOH HOH . 
S 7 HOH C 55 355 41 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C7 7K9 . . . L 3 51.633 108.237 41.781 0.75 68.88 ? C7 7K9 301 B 1 
HETATM 2 N N2 7K9 . . . L 3 52.634 107.239 41.429 0.75 66.76 ? N2 7K9 301 B 1 
HETATM 3 C C9 7K9 . . . L 3 52.78 106.043 41.842 0.75 67.87 ? C9 7K9 301 B 1 
HETATM 4 C C10 7K9 . . . L 3 53.915 105.198 41.32 0.75 67.32 ? C10 7K9 301 B 1 
HETATM 5 O O2 7K9 . . . L 3 52.025 105.547 42.664 0.75 69.27 ? O2 7K9 301 B 1 
HETATM 6 C C24 7K9 . . . L 3 54.471 104.207 42.13 0.75 66.07 ? C24 7K9 301 B 1 
HETATM 7 C C25 7K9 . . . L 3 55.523 103.415 41.653 0.75 67.03 ? C25 7K9 301 B 1 
HETATM 8 C C26 7K9 . . . L 3 56.033 103.601 40.369 0.75 67.04 ? C26 7K9 301 B 1 
HETATM 9 C C27 7K9 . . . L 3 55.483 104.587 39.556 0.75 70.53 ? C27 7K9 301 B 1 
HETATM 10 C C28 7K9 . . . L 3 54.435 105.373 40.034 0.75 71.34 ? C28 7K9 301 B 1 
HETATM 11 O O8 7K9 . . . L 3 53.904 106.313 39.215 0.75 76.31 ? O8 7K9 301 B 1 
HETATM 12 O O9 7K9 . . . L 3 55.977 104.781 38.299 0.75 72.37 ? O9 7K9 301 B 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           12 
#