data_5KIK # _model_server_result.job_id CMTVNbklX2I79HnPccEXeg _model_server_result.datetime_utc '2024-10-19 16:40:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kik # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":605}' # _entry.id 5KIK # _exptl.entry_id 5KIK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KIK _cell.length_a 153.529 _cell.length_b 153.529 _cell.length_c 93.043 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KIK _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_554 -y,-x,-z-1/2 0 -1 0 -1 0 0 0 0 -1 0 0 -46.5215 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O TYR 168 A TYR 148 1_555 D K K . A K 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.857 ? metalc ? metalc2 A O SER 170 A SER 150 1_555 D K K . A K 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? metalc ? metalc3 A O TYR 173 A TYR 153 1_555 D K K . A K 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.744 ? metalc ? metalc4 A NE2 HIS 324 A HIS 305 1_555 B FE FE . A FE 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc5 A ND1 HIS 326 A HIS 307 1_555 B FE FE . A FE 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc6 A OD2 ASP 328 A ASP 309 1_555 C FE FE . A FE 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc7 A NE2 HIS 329 A HIS 310 1_555 C FE FE . A FE 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc8 A OE1 GLU 396 A GLU 377 1_555 B FE FE . A FE 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc9 A OE2 GLU 396 A GLU 377 1_555 B FE FE . A FE 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc10 A OD2 ASP 422 A ASP 403 1_555 B FE FE . A FE 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc11 A OD2 ASP 422 A ASP 403 1_555 C FE FE . A FE 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc12 B FE FE . A FE 601 1_555 G O HOH . A HOH 776 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.944 ? metalc ? metalc13 C FE FE . A FE 602 1_555 G O HOH . A HOH 740 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc14 C FE FE . A FE 602 1_555 G O HOH . A HOH 776 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc15 C FE FE . A FE 602 1_555 G O HOH . A HOH 865 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc16 D K K . A K 603 1_555 G O HOH . A HOH 868 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.682 ? metalc ? metalc17 D K K . A K 603 1_555 G O HOH . A HOH 876 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.179 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5KIK _atom_sites.fract_transf_matrix[1][1] 0.006513 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006513 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010748 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE A 1 601 600 FE FE . C 2 FE A 1 602 601 FE FE . D 3 K A 1 603 1 K K . E 4 GOL A 1 604 1 GOL GOL . F 4 GOL A 1 605 2 GOL GOL . G 5 HOH A 1 701 164 HOH HOH . G 5 HOH A 2 702 135 HOH HOH . G 5 HOH A 3 703 151 HOH HOH . G 5 HOH A 4 704 124 HOH HOH . G 5 HOH A 5 705 178 HOH HOH . G 5 HOH A 6 706 63 HOH HOH . G 5 HOH A 7 707 160 HOH HOH . G 5 HOH A 8 708 89 HOH HOH . G 5 HOH A 9 709 56 HOH HOH . G 5 HOH A 10 710 144 HOH HOH . G 5 HOH A 11 711 80 HOH HOH . G 5 HOH A 12 712 96 HOH HOH . G 5 HOH A 13 713 59 HOH HOH . G 5 HOH A 14 714 66 HOH HOH . G 5 HOH A 15 715 100 HOH HOH . G 5 HOH A 16 716 169 HOH HOH . G 5 HOH A 17 717 176 HOH HOH . G 5 HOH A 18 718 14 HOH HOH . G 5 HOH A 19 719 23 HOH HOH . G 5 HOH A 20 720 177 HOH HOH . G 5 HOH A 21 721 162 HOH HOH . G 5 HOH A 22 722 51 HOH HOH . G 5 HOH A 23 723 134 HOH HOH . G 5 HOH A 24 724 179 HOH HOH . G 5 HOH A 25 725 15 HOH HOH . G 5 HOH A 26 726 39 HOH HOH . G 5 HOH A 27 727 1 HOH HOH . G 5 HOH A 28 728 34 HOH HOH . G 5 HOH A 29 729 123 HOH HOH . G 5 HOH A 30 730 92 HOH HOH . G 5 HOH A 31 731 107 HOH HOH . G 5 HOH A 32 732 21 HOH HOH . G 5 HOH A 33 733 95 HOH HOH . G 5 HOH A 34 734 99 HOH HOH . G 5 HOH A 35 735 16 HOH HOH . G 5 HOH A 36 736 12 HOH HOH . G 5 HOH A 37 737 32 HOH HOH . G 5 HOH A 38 738 145 HOH HOH . G 5 HOH A 39 739 166 HOH HOH . G 5 HOH A 40 740 58 HOH HOH . G 5 HOH A 41 741 78 HOH HOH . G 5 HOH A 42 742 53 HOH HOH . G 5 HOH A 43 743 7 HOH HOH . G 5 HOH A 44 744 27 HOH HOH . G 5 HOH A 45 745 117 HOH HOH . G 5 HOH A 46 746 74 HOH HOH . G 5 HOH A 47 747 149 HOH HOH . G 5 HOH A 48 748 6 HOH HOH . G 5 HOH A 49 749 52 HOH HOH . G 5 HOH A 50 750 167 HOH HOH . G 5 HOH A 51 751 90 HOH HOH . G 5 HOH A 52 752 122 HOH HOH . G 5 HOH A 53 753 41 HOH HOH . G 5 HOH A 54 754 83 HOH HOH . G 5 HOH A 55 755 161 HOH HOH . G 5 HOH A 56 756 142 HOH HOH . G 5 HOH A 57 757 150 HOH HOH . G 5 HOH A 58 758 46 HOH HOH . G 5 HOH A 59 759 67 HOH HOH . G 5 HOH A 60 760 45 HOH HOH . G 5 HOH A 61 761 94 HOH HOH . G 5 HOH A 62 762 33 HOH HOH . G 5 HOH A 63 763 130 HOH HOH . G 5 HOH A 64 764 62 HOH HOH . G 5 HOH A 65 765 20 HOH HOH . G 5 HOH A 66 766 156 HOH HOH . G 5 HOH A 67 767 175 HOH HOH . G 5 HOH A 68 768 5 HOH HOH . G 5 HOH A 69 769 88 HOH HOH . G 5 HOH A 70 770 55 HOH HOH . G 5 HOH A 71 771 8 HOH HOH . G 5 HOH A 72 772 170 HOH HOH . G 5 HOH A 73 773 40 HOH HOH . G 5 HOH A 74 774 91 HOH HOH . G 5 HOH A 75 775 125 HOH HOH . G 5 HOH A 76 776 132 HOH HOH . G 5 HOH A 77 777 115 HOH HOH . G 5 HOH A 78 778 26 HOH HOH . G 5 HOH A 79 779 172 HOH HOH . G 5 HOH A 80 780 84 HOH HOH . G 5 HOH A 81 781 30 HOH HOH . G 5 HOH A 82 782 50 HOH HOH . G 5 HOH A 83 783 87 HOH HOH . G 5 HOH A 84 784 126 HOH HOH . G 5 HOH A 85 785 76 HOH HOH . G 5 HOH A 86 786 159 HOH HOH . G 5 HOH A 87 787 11 HOH HOH . G 5 HOH A 88 788 141 HOH HOH . G 5 HOH A 89 789 43 HOH HOH . G 5 HOH A 90 790 3 HOH HOH . G 5 HOH A 91 791 147 HOH HOH . G 5 HOH A 92 792 104 HOH HOH . G 5 HOH A 93 793 4 HOH HOH . G 5 HOH A 94 794 146 HOH HOH . G 5 HOH A 95 795 9 HOH HOH . G 5 HOH A 96 796 98 HOH HOH . G 5 HOH A 97 797 10 HOH HOH . G 5 HOH A 98 798 64 HOH HOH . G 5 HOH A 99 799 113 HOH HOH . G 5 HOH A 100 800 86 HOH HOH . G 5 HOH A 101 801 120 HOH HOH . G 5 HOH A 102 802 148 HOH HOH . G 5 HOH A 103 803 2 HOH HOH . G 5 HOH A 104 804 54 HOH HOH . G 5 HOH A 105 805 75 HOH HOH . G 5 HOH A 106 806 129 HOH HOH . G 5 HOH A 107 807 103 HOH HOH . G 5 HOH A 108 808 48 HOH HOH . G 5 HOH A 109 809 28 HOH HOH . G 5 HOH A 110 810 79 HOH HOH . G 5 HOH A 111 811 171 HOH HOH . G 5 HOH A 112 812 18 HOH HOH . G 5 HOH A 113 813 70 HOH HOH . G 5 HOH A 114 814 25 HOH HOH . G 5 HOH A 115 815 85 HOH HOH . G 5 HOH A 116 816 168 HOH HOH . G 5 HOH A 117 817 153 HOH HOH . G 5 HOH A 118 818 65 HOH HOH . G 5 HOH A 119 819 35 HOH HOH . G 5 HOH A 120 820 13 HOH HOH . G 5 HOH A 121 821 71 HOH HOH . G 5 HOH A 122 822 31 HOH HOH . G 5 HOH A 123 823 17 HOH HOH . G 5 HOH A 124 824 49 HOH HOH . G 5 HOH A 125 825 105 HOH HOH . G 5 HOH A 126 826 38 HOH HOH . G 5 HOH A 127 827 60 HOH HOH . G 5 HOH A 128 828 114 HOH HOH . G 5 HOH A 129 829 118 HOH HOH . G 5 HOH A 130 830 133 HOH HOH . G 5 HOH A 131 831 61 HOH HOH . G 5 HOH A 132 832 165 HOH HOH . G 5 HOH A 133 833 136 HOH HOH . G 5 HOH A 134 834 73 HOH HOH . G 5 HOH A 135 835 157 HOH HOH . G 5 HOH A 136 836 22 HOH HOH . G 5 HOH A 137 837 36 HOH HOH . G 5 HOH A 138 838 174 HOH HOH . G 5 HOH A 139 839 24 HOH HOH . G 5 HOH A 140 840 109 HOH HOH . G 5 HOH A 141 841 119 HOH HOH . G 5 HOH A 142 842 138 HOH HOH . G 5 HOH A 143 843 47 HOH HOH . G 5 HOH A 144 844 81 HOH HOH . G 5 HOH A 145 845 37 HOH HOH . G 5 HOH A 146 846 112 HOH HOH . G 5 HOH A 147 847 143 HOH HOH . G 5 HOH A 148 848 154 HOH HOH . G 5 HOH A 149 849 19 HOH HOH . G 5 HOH A 150 850 69 HOH HOH . G 5 HOH A 151 851 127 HOH HOH . G 5 HOH A 152 852 106 HOH HOH . G 5 HOH A 153 853 116 HOH HOH . G 5 HOH A 154 854 121 HOH HOH . G 5 HOH A 155 855 82 HOH HOH . G 5 HOH A 156 856 77 HOH HOH . G 5 HOH A 157 857 42 HOH HOH . G 5 HOH A 158 858 152 HOH HOH . G 5 HOH A 159 859 97 HOH HOH . G 5 HOH A 160 860 102 HOH HOH . G 5 HOH A 161 861 163 HOH HOH . G 5 HOH A 162 862 72 HOH HOH . G 5 HOH A 163 863 108 HOH HOH . G 5 HOH A 164 864 128 HOH HOH . G 5 HOH A 165 865 57 HOH HOH . G 5 HOH A 166 866 173 HOH HOH . G 5 HOH A 167 867 101 HOH HOH . G 5 HOH A 168 868 137 HOH HOH . G 5 HOH A 169 869 29 HOH HOH . G 5 HOH A 170 870 180 HOH HOH . G 5 HOH A 171 871 68 HOH HOH . G 5 HOH A 172 872 93 HOH HOH . G 5 HOH A 173 873 44 HOH HOH . G 5 HOH A 174 874 110 HOH HOH . G 5 HOH A 175 875 131 HOH HOH . G 5 HOH A 176 876 139 HOH HOH . G 5 HOH A 177 877 155 HOH HOH . G 5 HOH A 178 878 140 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 4 29.698 -42.763 -47.989 1 72.03 ? C1 GOL 605 A 1 HETATM 2 O O1 GOL . . . F 4 29.54 -44.06 -47.367 1 63.73 ? O1 GOL 605 A 1 HETATM 3 C C2 GOL . . . F 4 28.562 -41.841 -47.557 1 70.04 ? C2 GOL 605 A 1 HETATM 4 O O2 GOL . . . F 4 28.184 -42.222 -46.255 1 62.46 ? O2 GOL 605 A 1 HETATM 5 C C3 GOL . . . F 4 28.859 -40.351 -47.475 1 74.6 ? C3 GOL 605 A 1 HETATM 6 O O3 GOL . . . F 4 29.282 -39.838 -48.731 1 83.01 ? O3 GOL 605 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 6 #