data_5KIL # _model_server_result.job_id ABDG_rRuygayWk-vZDKU7A _model_server_result.datetime_utc '2024-11-10 01:24:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kil # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":603}' # _entry.id 5KIL # _exptl.entry_id 5KIL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 59.044 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KIL _cell.length_a 153.954 _cell.length_b 153.954 _cell.length_c 92.548 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KIL _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_554 -y,-x,-z-1/2 0 -1 0 -1 0 0 0 0 -1 0 0 -46.274 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O TYR 168 A TYR 148 1_555 C K K . A K 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.707 ? metalc ? metalc2 A O SER 170 A SER 150 1_555 C K K . A K 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.805 ? metalc ? metalc3 A O TYR 173 A TYR 153 1_555 C K K . A K 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.833 ? metalc ? metalc4 A NE2 HIS 324 A HIS 305 1_555 B FE1 FEO . A FEO 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc5 A ND1 HIS 326 A HIS 307 1_555 B FE1 FEO . A FEO 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc6 A OD2 ASP 328 A ASP 309 1_555 B FE2 FEO . A FEO 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.847 ? metalc ? metalc7 A NE2 HIS 329 A HIS 310 1_555 B FE2 FEO . A FEO 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc8 A OD2 ASP 396 A ASP 377 1_555 B FE1 FEO . A FEO 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.857 ? metalc ? metalc9 A OD2 ASP 422 A ASP 403 1_555 B FE2 FEO . A FEO 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? metalc ? metalc10 A OD2 ASP 422 A ASP 403 1_555 B FE1 FEO . A FEO 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc11 B FE2 FEO . A FEO 601 1_555 D O ACT . A ACT 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc12 B FE2 FEO . A FEO 601 1_555 D OXT ACT . A ACT 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? # _chem_comp.formula 'C2 H3 O2 -1' _chem_comp.formula_weight 59.044 _chem_comp.id ACT _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O ACT doub 1 n n C OXT ACT sing 2 n n C CH3 ACT sing 3 n n CH3 H1 ACT sing 4 n n CH3 H2 ACT sing 5 n n CH3 H3 ACT sing 6 n n # _atom_sites.entry_id 5KIL _atom_sites.fract_transf_matrix[1][1] 0.006495 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006495 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010805 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FEO A 1 601 601 FEO FEO . C 3 K A 1 602 603 K K . D 4 ACT A 1 603 605 ACT ACT . E 5 HOH A 1 701 701 HOH HOH . E 5 HOH A 2 702 702 HOH HOH . E 5 HOH A 3 703 703 HOH HOH . E 5 HOH A 4 704 704 HOH HOH . E 5 HOH A 5 705 705 HOH HOH . E 5 HOH A 6 706 706 HOH HOH . E 5 HOH A 7 707 707 HOH HOH . E 5 HOH A 8 708 708 HOH HOH . E 5 HOH A 9 709 709 HOH HOH . E 5 HOH A 10 710 710 HOH HOH . E 5 HOH A 11 711 711 HOH HOH . E 5 HOH A 12 712 712 HOH HOH . E 5 HOH A 13 713 713 HOH HOH . E 5 HOH A 14 714 714 HOH HOH . E 5 HOH A 15 715 715 HOH HOH . E 5 HOH A 16 716 716 HOH HOH . E 5 HOH A 17 717 717 HOH HOH . E 5 HOH A 18 718 718 HOH HOH . E 5 HOH A 19 719 719 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ACT . . . D 4 17.429 -47.852 -11.532 0.7 74.07 ? C ACT 603 A 1 HETATM 2 O O ACT . . . D 4 18.193 -47.971 -12.531 0.7 74.91 ? O ACT 603 A 1 HETATM 3 O OXT ACT . . . D 4 16.953 -46.724 -11.138 0.7 69 ? OXT ACT 603 A 1 HETATM 4 C CH3 ACT . . . D 4 17.031 -49.141 -10.827 0.7 64.67 ? CH3 ACT 603 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #