data_5KIN # _model_server_result.job_id L81ob272mrsT4E9RoXu-iw _model_server_result.datetime_utc '2025-01-26 10:45:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kin # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":301}' # _entry.id 5KIN # _exptl.entry_id 5KIN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.69 _cell.angle_gamma 90 _cell.entry_id 5KIN _cell.length_a 67.697 _cell.length_b 71.16 _cell.length_c 138.682 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KIN _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C HIS 90 B HIS 90 1_555 B N LLP 91 B LLP 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 B C LLP 91 B LLP 91 1_555 B N ILE 92 B ILE 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 D C HIS 90 D HIS 90 1_555 D N LLP 91 D LLP 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale4 D C LLP 91 D LLP 91 1_555 D N ILE 92 D ILE 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5KIN _atom_sites.fract_transf_matrix[1][1] 0.014772 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003055 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014053 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007363 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GOL A 1 301 2 GOL GOL . F 3 GOL C 1 301 1 GOL GOL . G 3 GOL D 1 501 3 GOL GOL . H 4 HOH A 1 401 61 HOH HOH . I 4 HOH B 1 501 24 HOH HOH . I 4 HOH B 2 502 55 HOH HOH . I 4 HOH B 3 503 3 HOH HOH . I 4 HOH B 4 504 8 HOH HOH . I 4 HOH B 5 505 85 HOH HOH . I 4 HOH B 6 506 70 HOH HOH . I 4 HOH B 7 507 30 HOH HOH . I 4 HOH B 8 508 41 HOH HOH . I 4 HOH B 9 509 62 HOH HOH . I 4 HOH B 10 510 97 HOH HOH . I 4 HOH B 11 511 35 HOH HOH . I 4 HOH B 12 512 46 HOH HOH . I 4 HOH B 13 513 7 HOH HOH . I 4 HOH B 14 514 77 HOH HOH . I 4 HOH B 15 515 22 HOH HOH . I 4 HOH B 16 516 39 HOH HOH . I 4 HOH B 17 517 47 HOH HOH . I 4 HOH B 18 518 93 HOH HOH . I 4 HOH B 19 519 20 HOH HOH . I 4 HOH B 20 520 98 HOH HOH . I 4 HOH B 21 521 64 HOH HOH . I 4 HOH B 22 522 50 HOH HOH . I 4 HOH B 23 523 68 HOH HOH . I 4 HOH B 24 524 60 HOH HOH . I 4 HOH B 25 525 104 HOH HOH . I 4 HOH B 26 526 71 HOH HOH . I 4 HOH B 27 527 32 HOH HOH . I 4 HOH B 28 528 74 HOH HOH . I 4 HOH B 29 529 34 HOH HOH . I 4 HOH B 30 530 106 HOH HOH . I 4 HOH B 31 531 89 HOH HOH . I 4 HOH B 32 532 23 HOH HOH . I 4 HOH B 33 533 73 HOH HOH . I 4 HOH B 34 534 108 HOH HOH . I 4 HOH B 35 535 105 HOH HOH . I 4 HOH B 36 536 52 HOH HOH . I 4 HOH B 37 537 25 HOH HOH . I 4 HOH B 38 538 69 HOH HOH . I 4 HOH B 39 539 72 HOH HOH . I 4 HOH B 40 540 31 HOH HOH . J 4 HOH C 1 401 100 HOH HOH . J 4 HOH C 2 402 6 HOH HOH . J 4 HOH C 3 403 43 HOH HOH . J 4 HOH C 4 404 4 HOH HOH . J 4 HOH C 5 405 81 HOH HOH . J 4 HOH C 6 406 66 HOH HOH . J 4 HOH C 7 407 58 HOH HOH . J 4 HOH C 8 408 99 HOH HOH . J 4 HOH C 9 409 102 HOH HOH . J 4 HOH C 10 410 59 HOH HOH . J 4 HOH C 11 411 80 HOH HOH . J 4 HOH C 12 412 45 HOH HOH . J 4 HOH C 13 413 40 HOH HOH . J 4 HOH C 14 414 78 HOH HOH . J 4 HOH C 15 415 79 HOH HOH . J 4 HOH C 16 416 75 HOH HOH . J 4 HOH C 17 417 76 HOH HOH . J 4 HOH C 18 418 19 HOH HOH . J 4 HOH C 19 419 103 HOH HOH . J 4 HOH C 20 420 107 HOH HOH . K 4 HOH D 1 601 88 HOH HOH . K 4 HOH D 2 602 54 HOH HOH . K 4 HOH D 3 603 37 HOH HOH . K 4 HOH D 4 604 5 HOH HOH . K 4 HOH D 5 605 48 HOH HOH . K 4 HOH D 6 606 13 HOH HOH . K 4 HOH D 7 607 42 HOH HOH . K 4 HOH D 8 608 21 HOH HOH . K 4 HOH D 9 609 87 HOH HOH . K 4 HOH D 10 610 26 HOH HOH . K 4 HOH D 11 611 63 HOH HOH . K 4 HOH D 12 612 82 HOH HOH . K 4 HOH D 13 613 101 HOH HOH . K 4 HOH D 14 614 16 HOH HOH . K 4 HOH D 15 615 67 HOH HOH . K 4 HOH D 16 616 18 HOH HOH . K 4 HOH D 17 617 12 HOH HOH . K 4 HOH D 18 618 91 HOH HOH . K 4 HOH D 19 619 14 HOH HOH . K 4 HOH D 20 620 17 HOH HOH . K 4 HOH D 21 621 2 HOH HOH . K 4 HOH D 22 622 65 HOH HOH . K 4 HOH D 23 623 51 HOH HOH . K 4 HOH D 24 624 84 HOH HOH . K 4 HOH D 25 625 53 HOH HOH . K 4 HOH D 26 626 15 HOH HOH . K 4 HOH D 27 627 10 HOH HOH . K 4 HOH D 28 628 86 HOH HOH . K 4 HOH D 29 629 90 HOH HOH . K 4 HOH D 30 630 1 HOH HOH . K 4 HOH D 31 631 56 HOH HOH . K 4 HOH D 32 632 28 HOH HOH . K 4 HOH D 33 633 83 HOH HOH . K 4 HOH D 34 634 11 HOH HOH . K 4 HOH D 35 635 9 HOH HOH . K 4 HOH D 36 636 49 HOH HOH . K 4 HOH D 37 637 36 HOH HOH . K 4 HOH D 38 638 92 HOH HOH . K 4 HOH D 39 639 57 HOH HOH . K 4 HOH D 40 640 44 HOH HOH . K 4 HOH D 41 641 95 HOH HOH . K 4 HOH D 42 642 38 HOH HOH . K 4 HOH D 43 643 94 HOH HOH . K 4 HOH D 44 644 33 HOH HOH . K 4 HOH D 45 645 109 HOH HOH . K 4 HOH D 46 646 29 HOH HOH . K 4 HOH D 47 647 96 HOH HOH . K 4 HOH D 48 648 27 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 3 76.193 59.255 95.489 1 63.77 ? C1 GOL 301 C 1 HETATM 2 O O1 GOL . . . F 3 77.23 59.256 94.534 1 68.58 ? O1 GOL 301 C 1 HETATM 3 C C2 GOL . . . F 3 76.395 60.408 96.465 1 56.25 ? C2 GOL 301 C 1 HETATM 4 O O2 GOL . . . F 3 77.191 61.399 95.857 1 60.48 ? O2 GOL 301 C 1 HETATM 5 C C3 GOL . . . F 3 75.04 61.002 96.833 1 42.49 ? C3 GOL 301 C 1 HETATM 6 O O3 GOL . . . F 3 74.221 59.994 97.384 1 35.66 ? O3 GOL 301 C 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #