data_5KIW # _model_server_result.job_id C52BmvGw3r5GK15sf6buxA _model_server_result.datetime_utc '2024-11-15 08:32:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kiw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":800}' # _entry.id 5KIW # _exptl.entry_id 5KIW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5KIW _cell.length_a 153.772 _cell.length_b 153.772 _cell.length_c 240.641 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KIW _symmetry.cell_setting ? _symmetry.Int_Tables_number 177 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 6 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 E O3G ANP . A ANP 800 1_555 F MG MG . A MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.838 ? metalc ? metalc2 E O2B ANP . A ANP 800 1_555 F MG MG . A MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.75 ? metalc ? metalc3 B OG1 THR 252 B THR 252 1_555 H MG MG . B MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.71 ? metalc ? metalc4 G O1G ANP . B ANP 800 1_555 H MG MG . B MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? metalc ? metalc5 G O1B ANP . B ANP 800 1_555 H MG MG . B MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.767 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 5KIW _atom_sites.fract_transf_matrix[1][1] 0.006503 _atom_sites.fract_transf_matrix[1][2] 0.003755 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007509 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004156 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ANP A 1 800 800 ANP ANP . F 4 MG A 1 801 801 MG MG . G 3 ANP B 1 800 800 ANP ANP . H 4 MG B 1 801 801 MG MG . I 5 HOH A 1 901 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . E 3 13.046 27.149 84.027 1 88.8 ? PG ANP 800 A 1 HETATM 2 O O1G ANP . . . E 3 13.826 26.081 83.292 1 75.73 ? O1G ANP 800 A 1 HETATM 3 O O2G ANP . . . E 3 11.637 27.406 83.541 1 86.97 ? O2G ANP 800 A 1 HETATM 4 O O3G ANP . . . E 3 13.081 27.094 85.537 1 99.69 ? O3G ANP 800 A 1 HETATM 5 P PB ANP . . . E 3 13.124 30.083 83.716 1 91.4 ? PB ANP 800 A 1 HETATM 6 O O1B ANP . . . E 3 12.702 30.288 82.283 1 99.76 ? O1B ANP 800 A 1 HETATM 7 O O2B ANP . . . E 3 12.068 30.004 84.786 1 86.38 ? O2B ANP 800 A 1 HETATM 8 N N3B ANP . . . E 3 13.982 28.58 83.711 1 87.42 ? N3B ANP 800 A 1 HETATM 9 P PA ANP . . . E 3 15.175 31.353 85.153 1 79.73 ? PA ANP 800 A 1 HETATM 10 O O1A ANP . . . E 3 15.312 29.954 85.715 1 79.79 ? O1A ANP 800 A 1 HETATM 11 O O2A ANP . . . E 3 14.847 32.496 86.082 1 77.93 ? O2A ANP 800 A 1 HETATM 12 O O3A ANP . . . E 3 14.053 31.355 84.018 1 84.79 ? O3A ANP 800 A 1 HETATM 13 O O5' ANP . . . E 3 16.472 31.751 84.289 1 71.79 ? O5' ANP 800 A 1 HETATM 14 C C5' ANP . . . E 3 17.785 31.311 84.628 1 77.22 ? C5' ANP 800 A 1 HETATM 15 C C4' ANP . . . E 3 18.836 32.437 84.658 1 85.25 ? C4' ANP 800 A 1 HETATM 16 O O4' ANP . . . E 3 19.303 32.821 83.353 1 82.58 ? O4' ANP 800 A 1 HETATM 17 C C3' ANP . . . E 3 18.419 33.754 85.32 1 92.55 ? C3' ANP 800 A 1 HETATM 18 O O3' ANP . . . E 3 18.559 33.804 86.738 1 117.82 ? O3' ANP 800 A 1 HETATM 19 C C2' ANP . . . E 3 19.406 34.701 84.702 1 90.28 ? C2' ANP 800 A 1 HETATM 20 O O2' ANP . . . E 3 20.681 34.477 85.303 1 93.46 ? O2' ANP 800 A 1 HETATM 21 C C1' ANP . . . E 3 19.377 34.261 83.25 1 87.04 ? C1' ANP 800 A 1 HETATM 22 N N9 ANP . . . E 3 18.155 34.899 82.675 1 82.73 ? N9 ANP 800 A 1 HETATM 23 C C8 ANP . . . E 3 17.015 34.267 82.328 1 83.96 ? C8 ANP 800 A 1 HETATM 24 N N7 ANP . . . E 3 16.089 35.138 81.878 1 75.66 ? N7 ANP 800 A 1 HETATM 25 C C5 ANP . . . E 3 16.631 36.338 81.956 1 68.55 ? C5 ANP 800 A 1 HETATM 26 C C6 ANP . . . E 3 16.169 37.67 81.645 1 71.09 ? C6 ANP 800 A 1 HETATM 27 N N6 ANP . . . E 3 14.927 37.829 81.159 1 80.64 ? N6 ANP 800 A 1 HETATM 28 N N1 ANP . . . E 3 17.002 38.694 81.863 1 72.1 ? N1 ANP 800 A 1 HETATM 29 C C2 ANP . . . E 3 18.239 38.506 82.343 1 75.01 ? C2 ANP 800 A 1 HETATM 30 N N3 ANP . . . E 3 18.723 37.294 82.642 1 73.44 ? N3 ANP 800 A 1 HETATM 31 C C4 ANP . . . E 3 17.976 36.196 82.474 1 71.69 ? C4 ANP 800 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 247 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #