data_5KIW # _model_server_result.job_id gi3ortSQ9EOy2_z7tprj7Q _model_server_result.datetime_utc '2025-08-31 15:13:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kiw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":800}' # _entry.id 5KIW # _exptl.entry_id 5KIW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5KIW _cell.length_a 153.772 _cell.length_b 153.772 _cell.length_c 240.641 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KIW _symmetry.cell_setting ? _symmetry.Int_Tables_number 177 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 6 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 E O3G ANP . A ANP 800 1_555 F MG MG . A MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.838 ? metalc ? metalc2 E O2B ANP . A ANP 800 1_555 F MG MG . A MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.75 ? metalc ? metalc3 B OG1 THR 252 B THR 252 1_555 H MG MG . B MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.71 ? metalc ? metalc4 G O1G ANP . B ANP 800 1_555 H MG MG . B MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? metalc ? metalc5 G O1B ANP . B ANP 800 1_555 H MG MG . B MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.767 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 5KIW _atom_sites.fract_transf_matrix[1][1] 0.006503 _atom_sites.fract_transf_matrix[1][2] 0.003755 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007509 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004156 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ANP A 1 800 800 ANP ANP . F 4 MG A 1 801 801 MG MG . G 3 ANP B 1 800 800 ANP ANP . H 4 MG B 1 801 801 MG MG . I 5 HOH A 1 901 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . G 3 15.99 25.406 43.49 1 70.81 ? PG ANP 800 B 1 HETATM 2 O O1G ANP . . . G 3 15.852 25.26 41.971 1 73.84 ? O1G ANP 800 B 1 HETATM 3 O O2G ANP . . . G 3 17.048 24.511 44.075 1 63.49 ? O2G ANP 800 B 1 HETATM 4 O O3G ANP . . . G 3 14.696 25.403 44.268 1 62.68 ? O3G ANP 800 B 1 HETATM 5 P PB ANP . . . G 3 18.287 27.312 43.652 1 64.52 ? PB ANP 800 B 1 HETATM 6 O O1B ANP . . . G 3 18.822 26.538 42.492 1 66.41 ? O1B ANP 800 B 1 HETATM 7 O O2B ANP . . . G 3 18.828 26.982 45.003 1 74.8 ? O2B ANP 800 B 1 HETATM 8 N N3B ANP . . . G 3 16.575 27.031 43.736 1 64.74 ? N3B ANP 800 B 1 HETATM 9 P PA ANP . . . G 3 18.233 29.732 42.268 1 68.62 ? PA ANP 800 B 1 HETATM 10 O O1A ANP . . . G 3 19.435 29.954 41.38 1 73.46 ? O1A ANP 800 B 1 HETATM 11 O O2A ANP . . . G 3 17 29.155 41.628 1 68.02 ? O2A ANP 800 B 1 HETATM 12 O O3A ANP . . . G 3 18.713 28.839 43.5 1 63.09 ? O3A ANP 800 B 1 HETATM 13 O O5' ANP . . . G 3 17.88 31.078 43.091 1 61.42 ? O5' ANP 800 B 1 HETATM 14 C C5' ANP . . . G 3 16.824 31.967 42.741 1 60.12 ? C5' ANP 800 B 1 HETATM 15 C C4' ANP . . . G 3 17.271 33.426 42.862 1 61.72 ? C4' ANP 800 B 1 HETATM 16 O O4' ANP . . . G 3 17.64 33.777 44.191 1 59.72 ? O4' ANP 800 B 1 HETATM 17 C C3' ANP . . . G 3 18.48 33.795 42.011 1 65.64 ? C3' ANP 800 B 1 HETATM 18 O O3' ANP . . . G 3 18.13 34.185 40.681 1 77.07 ? O3' ANP 800 B 1 HETATM 19 C C2' ANP . . . G 3 19.053 34.984 42.724 1 64.57 ? C2' ANP 800 B 1 HETATM 20 O O2' ANP . . . G 3 18.4 36.145 42.232 1 61.66 ? O2' ANP 800 B 1 HETATM 21 C C1' ANP . . . G 3 18.743 34.706 44.189 1 63.09 ? C1' ANP 800 B 1 HETATM 22 N N9 ANP . . . G 3 19.949 34.099 44.813 1 62.93 ? N9 ANP 800 B 1 HETATM 23 C C8 ANP . . . G 3 20.001 32.868 45.335 1 65.36 ? C8 ANP 800 B 1 HETATM 24 N N7 ANP . . . G 3 21.232 32.579 45.804 1 61.88 ? N7 ANP 800 B 1 HETATM 25 C C5 ANP . . . G 3 21.998 33.622 45.559 1 58.48 ? C5 ANP 800 B 1 HETATM 26 C C6 ANP . . . G 3 23.402 33.934 45.809 1 61.61 ? C6 ANP 800 B 1 HETATM 27 N N6 ANP . . . G 3 24.198 33.035 46.424 1 65.45 ? N6 ANP 800 B 1 HETATM 28 N N1 ANP . . . G 3 23.854 35.136 45.408 1 62.72 ? N1 ANP 800 B 1 HETATM 29 C C2 ANP . . . G 3 23.031 36.026 44.805 1 65.48 ? C2 ANP 800 B 1 HETATM 30 N N3 ANP . . . G 3 21.728 35.79 44.555 1 62.82 ? N3 ANP 800 B 1 HETATM 31 C C4 ANP . . . G 3 21.163 34.625 44.913 1 59.67 ? C4 ANP 800 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 358 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #