data_5KJ0 # _model_server_result.job_id TMY4uAiwhn0MaFQ0qMWR5A _model_server_result.datetime_utc '2024-11-21 23:38:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kj0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":207}' # _entry.id 5KJ0 # _exptl.entry_id 5KJ0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KJ0 _cell.length_a 37.11 _cell.length_b 44.7 _cell.length_c 77.72 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KJ0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 167 n n C1 C2 EDO sing 168 n n C1 H11 EDO sing 169 n n C1 H12 EDO sing 170 n n O1 HO1 EDO sing 171 n n C2 O2 EDO sing 172 n n C2 H21 EDO sing 173 n n C2 H22 EDO sing 174 n n O2 HO2 EDO sing 175 n n # _atom_sites.entry_id 5KJ0 _atom_sites.fract_transf_matrix[1][1] 0.026947 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022371 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012867 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6TB A 1 201 1 6TB LIG . C 3 EDO A 1 202 1 EDO EDO . D 3 EDO A 1 203 2 EDO EDO . E 3 EDO A 1 204 3 EDO EDO . F 3 EDO A 1 205 4 EDO EDO . G 3 EDO A 1 206 5 EDO EDO . H 3 EDO A 1 207 6 EDO EDO . I 3 EDO A 1 208 7 EDO EDO . J 4 HOH A 1 301 122 HOH HOH . J 4 HOH A 2 302 78 HOH HOH . J 4 HOH A 3 303 79 HOH HOH . J 4 HOH A 4 304 70 HOH HOH . J 4 HOH A 5 305 99 HOH HOH . J 4 HOH A 6 306 71 HOH HOH . J 4 HOH A 7 307 43 HOH HOH . J 4 HOH A 8 308 75 HOH HOH . J 4 HOH A 9 309 82 HOH HOH . J 4 HOH A 10 310 1 HOH HOH . J 4 HOH A 11 311 120 HOH HOH . J 4 HOH A 12 312 23 HOH HOH . J 4 HOH A 13 313 134 HOH HOH . J 4 HOH A 14 314 54 HOH HOH . J 4 HOH A 15 315 88 HOH HOH . J 4 HOH A 16 316 60 HOH HOH . J 4 HOH A 17 317 59 HOH HOH . J 4 HOH A 18 318 101 HOH HOH . J 4 HOH A 19 319 100 HOH HOH . J 4 HOH A 20 320 85 HOH HOH . J 4 HOH A 21 321 38 HOH HOH . J 4 HOH A 22 322 126 HOH HOH . J 4 HOH A 23 323 39 HOH HOH . J 4 HOH A 24 324 46 HOH HOH . J 4 HOH A 25 325 83 HOH HOH . J 4 HOH A 26 326 34 HOH HOH . J 4 HOH A 27 327 16 HOH HOH . J 4 HOH A 28 328 66 HOH HOH . J 4 HOH A 29 329 13 HOH HOH . J 4 HOH A 30 330 29 HOH HOH . J 4 HOH A 31 331 141 HOH HOH . J 4 HOH A 32 332 69 HOH HOH . J 4 HOH A 33 333 40 HOH HOH . J 4 HOH A 34 334 17 HOH HOH . J 4 HOH A 35 335 10 HOH HOH . J 4 HOH A 36 336 91 HOH HOH . J 4 HOH A 37 337 95 HOH HOH . J 4 HOH A 38 338 98 HOH HOH . J 4 HOH A 39 339 2 HOH HOH . J 4 HOH A 40 340 44 HOH HOH . J 4 HOH A 41 341 63 HOH HOH . J 4 HOH A 42 342 14 HOH HOH . J 4 HOH A 43 343 142 HOH HOH . J 4 HOH A 44 344 109 HOH HOH . J 4 HOH A 45 345 9 HOH HOH . J 4 HOH A 46 346 21 HOH HOH . J 4 HOH A 47 347 41 HOH HOH . J 4 HOH A 48 348 11 HOH HOH . J 4 HOH A 49 349 53 HOH HOH . J 4 HOH A 50 350 35 HOH HOH . J 4 HOH A 51 351 31 HOH HOH . J 4 HOH A 52 352 30 HOH HOH . J 4 HOH A 53 353 94 HOH HOH . J 4 HOH A 54 354 56 HOH HOH . J 4 HOH A 55 355 58 HOH HOH . J 4 HOH A 56 356 55 HOH HOH . J 4 HOH A 57 357 3 HOH HOH . J 4 HOH A 58 358 108 HOH HOH . J 4 HOH A 59 359 24 HOH HOH . J 4 HOH A 60 360 7 HOH HOH . J 4 HOH A 61 361 74 HOH HOH . J 4 HOH A 62 362 92 HOH HOH . J 4 HOH A 63 363 80 HOH HOH . J 4 HOH A 64 364 47 HOH HOH . J 4 HOH A 65 365 37 HOH HOH . J 4 HOH A 66 366 61 HOH HOH . J 4 HOH A 67 367 26 HOH HOH . J 4 HOH A 68 368 76 HOH HOH . J 4 HOH A 69 369 81 HOH HOH . J 4 HOH A 70 370 84 HOH HOH . J 4 HOH A 71 371 6 HOH HOH . J 4 HOH A 72 372 90 HOH HOH . J 4 HOH A 73 373 48 HOH HOH . J 4 HOH A 74 374 143 HOH HOH . J 4 HOH A 75 375 8 HOH HOH . J 4 HOH A 76 376 28 HOH HOH . J 4 HOH A 77 377 15 HOH HOH . J 4 HOH A 78 378 86 HOH HOH . J 4 HOH A 79 379 104 HOH HOH . J 4 HOH A 80 380 116 HOH HOH . J 4 HOH A 81 381 140 HOH HOH . J 4 HOH A 82 382 50 HOH HOH . J 4 HOH A 83 383 5 HOH HOH . J 4 HOH A 84 384 51 HOH HOH . J 4 HOH A 85 385 20 HOH HOH . J 4 HOH A 86 386 97 HOH HOH . J 4 HOH A 87 387 36 HOH HOH . J 4 HOH A 88 388 72 HOH HOH . J 4 HOH A 89 389 96 HOH HOH . J 4 HOH A 90 390 123 HOH HOH . J 4 HOH A 91 391 32 HOH HOH . J 4 HOH A 92 392 57 HOH HOH . J 4 HOH A 93 393 128 HOH HOH . J 4 HOH A 94 394 62 HOH HOH . J 4 HOH A 95 395 4 HOH HOH . J 4 HOH A 96 396 33 HOH HOH . J 4 HOH A 97 397 12 HOH HOH . J 4 HOH A 98 398 125 HOH HOH . J 4 HOH A 99 399 25 HOH HOH . J 4 HOH A 100 400 87 HOH HOH . J 4 HOH A 101 401 27 HOH HOH . J 4 HOH A 102 402 77 HOH HOH . J 4 HOH A 103 403 18 HOH HOH . J 4 HOH A 104 404 136 HOH HOH . J 4 HOH A 105 405 19 HOH HOH . J 4 HOH A 106 406 103 HOH HOH . J 4 HOH A 107 407 133 HOH HOH . J 4 HOH A 108 408 106 HOH HOH . J 4 HOH A 109 409 137 HOH HOH . J 4 HOH A 110 410 131 HOH HOH . J 4 HOH A 111 411 102 HOH HOH . J 4 HOH A 112 412 110 HOH HOH . J 4 HOH A 113 413 112 HOH HOH . J 4 HOH A 114 414 68 HOH HOH . J 4 HOH A 115 415 113 HOH HOH . J 4 HOH A 116 416 124 HOH HOH . J 4 HOH A 117 417 139 HOH HOH . J 4 HOH A 118 418 45 HOH HOH . J 4 HOH A 119 419 67 HOH HOH . J 4 HOH A 120 420 111 HOH HOH . J 4 HOH A 121 421 73 HOH HOH . J 4 HOH A 122 422 135 HOH HOH . J 4 HOH A 123 423 118 HOH HOH . J 4 HOH A 124 424 121 HOH HOH . J 4 HOH A 125 425 105 HOH HOH . J 4 HOH A 126 426 117 HOH HOH . J 4 HOH A 127 427 42 HOH HOH . J 4 HOH A 128 428 49 HOH HOH . J 4 HOH A 129 429 127 HOH HOH . J 4 HOH A 130 430 115 HOH HOH . J 4 HOH A 131 431 138 HOH HOH . J 4 HOH A 132 432 65 HOH HOH . J 4 HOH A 133 433 52 HOH HOH . J 4 HOH A 134 434 132 HOH HOH . J 4 HOH A 135 435 22 HOH HOH . J 4 HOH A 136 436 93 HOH HOH . J 4 HOH A 137 437 129 HOH HOH . J 4 HOH A 138 438 107 HOH HOH . J 4 HOH A 139 439 64 HOH HOH . J 4 HOH A 140 440 130 HOH HOH . J 4 HOH A 141 441 114 HOH HOH . J 4 HOH A 142 442 119 HOH HOH . J 4 HOH A 143 443 89 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . H 3 21.138 10.04 2.936 1 33.96 ? C1 EDO 207 A 1 HETATM 2 O O1 EDO . . . H 3 21.672 10.896 3.957 1 32.07 ? O1 EDO 207 A 1 HETATM 3 C C2 EDO . . . H 3 21.657 8.624 3.123 1 35.42 ? C2 EDO 207 A 1 HETATM 4 O O2 EDO . . . H 3 21.001 8.019 4.234 1 37.03 ? O2 EDO 207 A 1 HETATM 5 H H11 EDO . . . H 3 20.047 10.042 2.988 1 40.75 ? H11 EDO 207 A 1 HETATM 6 H H12 EDO . . . H 3 21.432 10.413 1.953 1 40.75 ? H12 EDO 207 A 1 HETATM 7 H HO1 EDO . . . H 3 21.338 11.795 3.832 1 38.49 ? HO1 EDO 207 A 1 HETATM 8 H H21 EDO . . . H 3 21.469 8.039 2.22 1 42.5 ? H21 EDO 207 A 1 HETATM 9 H H22 EDO . . . H 3 22.735 8.645 3.297 1 42.5 ? H22 EDO 207 A 1 HETATM 10 H HO2 EDO . . . H 3 21.331 7.118 4.352 1 44.44 ? HO2 EDO 207 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #