data_5KJI # _model_server_result.job_id r0ULJKczc4J-c_EZ9FW8Gg _model_server_result.datetime_utc '2025-02-05 04:55:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kji # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":8001}' # _entry.id 5KJI # _exptl.entry_id 5KJI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.63 _cell.angle_gamma 90 _cell.entry_id 5KJI _cell.length_a 82.333 _cell.length_b 74.619 _cell.length_c 127.035 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KJI _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B SG CYS 327 B CYS 508 1_555 I ZN ZN . B ZN 8007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc2 B SG CYS 330 B CYS 511 1_555 I ZN ZN . B ZN 8007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc3 B SG CYS 335 B CYS 516 1_555 I ZN ZN . B ZN 8007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc4 B ND1 HIS 337 B HIS 518 1_555 I ZN ZN . B ZN 8007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? metalc ? metalc5 B SG CYS 389 B CYS 570 1_555 J ZN ZN . B ZN 8008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc6 B SG CYS 393 B CYS 574 1_555 J ZN ZN . B ZN 8008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? metalc ? metalc7 B SG CYS 434 B CYS 615 1_555 J ZN ZN . B ZN 8008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.637 ? metalc ? metalc8 B SG CYS 444 B CYS 625 1_555 J ZN ZN . B ZN 8008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc9 B SG CYS 504 B CYS 685 1_555 F ZN ZN . B ZN 8004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? metalc ? metalc10 B SG CYS 504 B CYS 685 1_555 H ZN ZN . B ZN 8006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc11 B NE2 HIS 506 B HIS 687 1_555 F ZN ZN . B ZN 8004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc12 B SG CYS 510 B CYS 691 1_555 F ZN ZN . B ZN 8004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc13 B SG CYS 510 B CYS 691 1_555 G ZN ZN . B ZN 8005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc14 B SG CYS 516 B CYS 697 1_555 F ZN ZN . B ZN 8004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc15 B SG CYS 518 B CYS 699 1_555 H ZN ZN . B ZN 8006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc16 B SG CYS 528 B CYS 709 1_555 G ZN ZN . B ZN 8005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc17 B SG CYS 528 B CYS 709 1_555 H ZN ZN . B ZN 8006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc18 B SG CYS 532 B CYS 713 1_555 H ZN ZN . B ZN 8006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc19 B SG CYS 534 B CYS 715 1_555 G ZN ZN . B ZN 8005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc20 B SG CYS 539 B CYS 720 1_555 G ZN ZN . B ZN 8005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc21 B SG CYS 546 B CYS 727 1_555 C ZN ZN . B ZN 8001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? metalc ? metalc22 B SG CYS 546 B CYS 727 1_555 E ZN ZN . B ZN 8003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc23 B SG CYS 548 B CYS 729 1_555 E ZN ZN . B ZN 8003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc24 B SG CYS 555 B CYS 736 1_555 D ZN ZN . B ZN 8002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc25 B SG CYS 555 B CYS 736 1_555 E ZN ZN . B ZN 8003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc26 B SG CYS 565 B CYS 746 1_555 E ZN ZN . B ZN 8003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc27 B SG CYS 567 B CYS 748 1_555 C ZN ZN . B ZN 8001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc28 B SG CYS 574 B CYS 755 1_555 C ZN ZN . B ZN 8001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc29 B SG CYS 574 B CYS 755 1_555 D ZN ZN . B ZN 8002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.627 ? metalc ? metalc30 B SG CYS 579 B CYS 760 1_555 C ZN ZN . B ZN 8001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc31 B SG CYS 582 B CYS 763 1_555 D ZN ZN . B ZN 8002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc32 B SG CYS 603 B CYS 784 1_555 D ZN ZN . B ZN 8002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5KJI _atom_sites.fract_transf_matrix[1][1] 0.012146 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003398 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013401 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008174 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN B 1 8001 8001 ZN ZN . D 3 ZN B 1 8002 8002 ZN ZN . E 3 ZN B 1 8003 8003 ZN ZN . F 3 ZN B 1 8004 8004 ZN ZN . G 3 ZN B 1 8005 8005 ZN ZN . H 3 ZN B 1 8006 8006 ZN ZN . I 3 ZN B 1 8007 8007 ZN ZN . J 3 ZN B 1 8008 8008 ZN ZN . K 4 SAH B 1 8009 8009 SAH SAH . L 5 HOH A 1 601 601 HOH HOH . L 5 HOH A 2 602 603 HOH HOH . L 5 HOH A 3 603 602 HOH HOH . L 5 HOH A 4 604 605 HOH HOH . L 5 HOH A 5 605 604 HOH HOH . L 5 HOH A 6 606 606 HOH HOH . L 5 HOH A 7 607 609 HOH HOH . L 5 HOH A 8 608 613 HOH HOH . L 5 HOH A 9 609 607 HOH HOH . L 5 HOH A 10 610 608 HOH HOH . L 5 HOH A 11 611 614 HOH HOH . L 5 HOH A 12 612 612 HOH HOH . L 5 HOH A 13 613 610 HOH HOH . L 5 HOH A 14 614 611 HOH HOH . L 5 HOH A 15 615 616 HOH HOH . L 5 HOH A 16 616 621 HOH HOH . L 5 HOH A 17 617 618 HOH HOH . L 5 HOH A 18 618 615 HOH HOH . L 5 HOH A 19 619 617 HOH HOH . L 5 HOH A 20 620 624 HOH HOH . L 5 HOH A 21 621 620 HOH HOH . L 5 HOH A 22 622 619 HOH HOH . L 5 HOH A 23 623 622 HOH HOH . L 5 HOH A 24 624 625 HOH HOH . L 5 HOH A 25 625 627 HOH HOH . L 5 HOH A 26 626 626 HOH HOH . L 5 HOH A 27 627 623 HOH HOH . L 5 HOH A 28 628 636 HOH HOH . L 5 HOH A 29 629 628 HOH HOH . L 5 HOH A 30 630 630 HOH HOH . L 5 HOH A 31 631 632 HOH HOH . L 5 HOH A 32 632 629 HOH HOH . L 5 HOH A 33 633 633 HOH HOH . L 5 HOH A 34 634 637 HOH HOH . L 5 HOH A 35 635 634 HOH HOH . L 5 HOH A 36 636 639 HOH HOH . L 5 HOH A 37 637 635 HOH HOH . L 5 HOH A 38 638 638 HOH HOH . L 5 HOH A 39 639 631 HOH HOH . L 5 HOH A 40 640 640 HOH HOH . L 5 HOH A 41 641 645 HOH HOH . L 5 HOH A 42 642 643 HOH HOH . L 5 HOH A 43 643 641 HOH HOH . L 5 HOH A 44 644 646 HOH HOH . L 5 HOH A 45 645 642 HOH HOH . L 5 HOH A 46 646 647 HOH HOH . L 5 HOH A 47 647 644 HOH HOH . L 5 HOH A 48 648 648 HOH HOH . M 5 HOH B 1 8101 8101 HOH HOH . M 5 HOH B 2 8102 8102 HOH HOH . M 5 HOH B 3 8103 8107 HOH HOH . M 5 HOH B 4 8104 8103 HOH HOH . M 5 HOH B 5 8105 8106 HOH HOH . M 5 HOH B 6 8106 8112 HOH HOH . M 5 HOH B 7 8107 8104 HOH HOH . M 5 HOH B 8 8108 8108 HOH HOH . M 5 HOH B 9 8109 8111 HOH HOH . M 5 HOH B 10 8110 8114 HOH HOH . M 5 HOH B 11 8111 8113 HOH HOH . M 5 HOH B 12 8112 8110 HOH HOH . M 5 HOH B 13 8113 8105 HOH HOH . M 5 HOH B 14 8114 8117 HOH HOH . M 5 HOH B 15 8115 8109 HOH HOH . M 5 HOH B 16 8116 8119 HOH HOH . M 5 HOH B 17 8117 8116 HOH HOH . M 5 HOH B 18 8118 8118 HOH HOH . M 5 HOH B 19 8119 8115 HOH HOH . M 5 HOH B 20 8120 8123 HOH HOH . M 5 HOH B 21 8121 8127 HOH HOH . M 5 HOH B 22 8122 8121 HOH HOH . M 5 HOH B 23 8123 8130 HOH HOH . M 5 HOH B 24 8124 8128 HOH HOH . M 5 HOH B 25 8125 8122 HOH HOH . M 5 HOH B 26 8126 8125 HOH HOH . M 5 HOH B 27 8127 8134 HOH HOH . M 5 HOH B 28 8128 8124 HOH HOH . M 5 HOH B 29 8129 8126 HOH HOH . M 5 HOH B 30 8130 8129 HOH HOH . M 5 HOH B 31 8131 8133 HOH HOH . M 5 HOH B 32 8132 8131 HOH HOH . M 5 HOH B 33 8133 8136 HOH HOH . M 5 HOH B 34 8134 8132 HOH HOH . M 5 HOH B 35 8135 8141 HOH HOH . M 5 HOH B 36 8136 8137 HOH HOH . M 5 HOH B 37 8137 8135 HOH HOH . M 5 HOH B 38 8138 8140 HOH HOH . M 5 HOH B 39 8139 8139 HOH HOH . M 5 HOH B 40 8140 8138 HOH HOH . M 5 HOH B 41 8141 8147 HOH HOH . M 5 HOH B 42 8142 8144 HOH HOH . M 5 HOH B 43 8143 8143 HOH HOH . M 5 HOH B 44 8144 8146 HOH HOH . M 5 HOH B 45 8145 8145 HOH HOH . M 5 HOH B 46 8146 8142 HOH HOH . M 5 HOH B 47 8147 8150 HOH HOH . M 5 HOH B 48 8148 8149 HOH HOH . M 5 HOH B 49 8149 8148 HOH HOH . M 5 HOH B 50 8150 8151 HOH HOH . M 5 HOH B 51 8151 8152 HOH HOH . M 5 HOH B 52 8152 8120 HOH HOH . M 5 HOH B 53 8153 8154 HOH HOH . M 5 HOH B 54 8154 8153 HOH HOH . M 5 HOH B 55 8155 8158 HOH HOH . M 5 HOH B 56 8156 8156 HOH HOH . M 5 HOH B 57 8157 8155 HOH HOH . M 5 HOH B 58 8158 8157 HOH HOH . M 5 HOH B 59 8159 8159 HOH HOH . M 5 HOH B 60 8160 8161 HOH HOH . M 5 HOH B 61 8161 8160 HOH HOH . M 5 HOH B 62 8162 8162 HOH HOH . M 5 HOH B 63 8163 8163 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 61.029 _atom_site.Cartn_y 113.514 _atom_site.Cartn_z 287.712 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 41.13 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 8001 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #