data_5KJN # _model_server_result.job_id ksZbNl410ELtjxYHeVrCRw _model_server_result.datetime_utc '2024-11-22 03:19:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kjn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":510}' # _entry.id 5KJN # _exptl.entry_id 5KJN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 536.71 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-[2-[4-[2-(1~{H}-indol-3-yl)ethyl]piperazin-1-yl]phenyl]-~{N}-(3-pyrrolidin-1-ylpropyl)pyridine-3-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KJN _cell.length_a 154.871 _cell.length_b 154.871 _cell.length_c 52.286 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KJN _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 48 A CYS 52 1_555 L ZN ZN . A ZN 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc2 A SG CYS 51 A CYS 55 1_555 L ZN ZN . A ZN 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc3 A SG CYS 61 A CYS 65 1_555 M ZN ZN . A ZN 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc4 A SG CYS 64 A CYS 68 1_555 M ZN ZN . A ZN 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc5 A SG CYS 70 A CYS 74 1_555 L ZN ZN . A ZN 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? metalc ? metalc6 A SG CYS 74 A CYS 78 1_555 L ZN ZN . A ZN 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc7 A NE2 HIS 82 A HIS 86 1_555 M ZN ZN . A ZN 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc8 A SG CYS 86 A CYS 90 1_555 M ZN ZN . A ZN 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc9 A OE1 GLU 186 A GLU 190 1_555 I NA NA . A NA 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.163 ? metalc ? metalc10 A OE2 GLU 186 A GLU 190 1_555 I NA NA . A NA 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.1 ? metalc ? metalc11 A SG CYS 205 A CYS 209 1_555 N ZN ZN . A ZN 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? metalc ? metalc12 A OD1 ASP 238 A ASP 242 1_555 J NA NA . A NA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.896 ? metalc ? metalc13 A SG CYS 258 A CYS 262 1_555 N ZN ZN . A ZN 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? metalc ? metalc14 A SG CYS 260 A CYS 264 1_555 N ZN ZN . A ZN 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc15 A SG CYS 263 A CYS 267 1_555 N ZN ZN . A ZN 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? # _chem_comp.formula 'C33 H40 N6 O' _chem_comp.formula_weight 536.71 _chem_comp.id 6TL _chem_comp.mon_nstd_flag . _chem_comp.name 5-[2-[4-[2-(1~{H}-indol-3-yl)ethyl]piperazin-1-yl]phenyl]-~{N}-(3-pyrrolidin-1-ylpropyl)pyridine-3-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms AZ506 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C31 C32 6TL sing 1 n n C31 C30 6TL sing 2 n n C32 C33 6TL sing 3 n n C30 N6 6TL sing 4 n n N6 C33 6TL sing 5 n n N6 C29 6TL sing 6 n n C29 C28 6TL sing 7 n n C28 C27 6TL sing 8 n n C27 N5 6TL sing 9 n n N1 C8 6TL sing 10 n y N1 C4 6TL sing 11 n y C8 C7 6TL doub 12 n y N5 C26 6TL sing 13 n n O C26 6TL doub 14 n n C26 C23 6TL sing 15 n n C4 C3 6TL doub 16 n y C4 C5 6TL sing 17 n y C7 C9 6TL sing 18 n n C7 C5 6TL sing 19 n y C9 C10 6TL sing 20 n n C12 C11 6TL sing 21 n n C12 N3 6TL sing 22 n n C3 C2 6TL sing 23 n y C22 C23 6TL doub 24 n y C22 C21 6TL sing 25 n y C23 C24 6TL sing 26 n y C11 N2 6TL sing 27 n n C5 C6 6TL doub 28 n y N2 C10 6TL sing 29 n n N2 C14 6TL sing 30 n n C21 C20 6TL sing 31 n n C21 C25 6TL doub 32 n y C19 C20 6TL doub 33 n y C19 C18 6TL sing 34 n y C24 N4 6TL doub 35 n y C20 C15 6TL sing 36 n y C18 C17 6TL doub 37 n y N3 C15 6TL sing 38 n n N3 C13 6TL sing 39 n n C15 C16 6TL doub 40 n y C2 C1 6TL doub 41 n y C17 C16 6TL sing 42 n y C6 C1 6TL sing 43 n y C25 N4 6TL sing 44 n y C13 C14 6TL sing 45 n n C1 H1 6TL sing 46 n n C2 H2 6TL sing 47 n n C3 H3 6TL sing 48 n n C8 H5 6TL sing 49 n n C9 H6 6TL sing 50 n n C9 H7 6TL sing 51 n n C10 H8 6TL sing 52 n n C10 H9 6TL sing 53 n n C11 H10 6TL sing 54 n n C11 H11 6TL sing 55 n n C12 H12 6TL sing 56 n n C12 H13 6TL sing 57 n n C13 H14 6TL sing 58 n n C13 H15 6TL sing 59 n n C14 H16 6TL sing 60 n n C14 H17 6TL sing 61 n n C16 H18 6TL sing 62 n n C19 H19 6TL sing 63 n n C22 H20 6TL sing 64 n n C24 H21 6TL sing 65 n n C27 H22 6TL sing 66 n n C27 H23 6TL sing 67 n n C30 H24 6TL sing 68 n n C30 H25 6TL sing 69 n n C31 H26 6TL sing 70 n n C31 H27 6TL sing 71 n n C32 H28 6TL sing 72 n n C32 H29 6TL sing 73 n n C33 H30 6TL sing 74 n n C33 H31 6TL sing 75 n n N5 H32 6TL sing 76 n n C28 H33 6TL sing 77 n n C28 H34 6TL sing 78 n n C29 H35 6TL sing 79 n n C29 H36 6TL sing 80 n n C25 H37 6TL sing 81 n n C18 H38 6TL sing 82 n n C17 H39 6TL sing 83 n n C6 H41 6TL sing 84 n n N1 H42 6TL sing 85 n n # _atom_sites.entry_id 5KJN _atom_sites.fract_transf_matrix[1][1] 0.006457 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006457 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019126 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAM A 1 501 1000 SAM SAM . C 3 BU3 A 1 502 1 BU3 BU3 . D 3 BU3 A 1 503 2 BU3 BU3 . E 3 BU3 A 1 504 3 BU3 BU3 . F 3 BU3 A 1 505 4 BU3 BU3 . G 3 BU3 A 1 506 5 BU3 BU3 . H 3 BU3 A 1 507 6 BU3 BU3 . I 4 NA A 1 508 1 NA NA . J 4 NA A 1 509 2 NA NA . K 5 6TL A 1 510 1 6TL INH . L 6 ZN A 1 511 1 ZN ZN . M 6 ZN A 1 512 2 ZN ZN . N 6 ZN A 1 513 3 ZN ZN . O 7 HOH A 1 601 75 HOH HOH . O 7 HOH A 2 602 6 HOH HOH . O 7 HOH A 3 603 62 HOH HOH . O 7 HOH A 4 604 51 HOH HOH . O 7 HOH A 5 605 77 HOH HOH . O 7 HOH A 6 606 1 HOH HOH . O 7 HOH A 7 607 53 HOH HOH . O 7 HOH A 8 608 71 HOH HOH . O 7 HOH A 9 609 81 HOH HOH . O 7 HOH A 10 610 41 HOH HOH . O 7 HOH A 11 611 78 HOH HOH . O 7 HOH A 12 612 54 HOH HOH . O 7 HOH A 13 613 43 HOH HOH . O 7 HOH A 14 614 45 HOH HOH . O 7 HOH A 15 615 79 HOH HOH . O 7 HOH A 16 616 4 HOH HOH . O 7 HOH A 17 617 14 HOH HOH . O 7 HOH A 18 618 3 HOH HOH . O 7 HOH A 19 619 36 HOH HOH . O 7 HOH A 20 620 12 HOH HOH . O 7 HOH A 21 621 76 HOH HOH . O 7 HOH A 22 622 26 HOH HOH . O 7 HOH A 23 623 61 HOH HOH . O 7 HOH A 24 624 21 HOH HOH . O 7 HOH A 25 625 8 HOH HOH . O 7 HOH A 26 626 52 HOH HOH . O 7 HOH A 27 627 16 HOH HOH . O 7 HOH A 28 628 7 HOH HOH . O 7 HOH A 29 629 25 HOH HOH . O 7 HOH A 30 630 31 HOH HOH . O 7 HOH A 31 631 39 HOH HOH . O 7 HOH A 32 632 11 HOH HOH . O 7 HOH A 33 633 28 HOH HOH . O 7 HOH A 34 634 24 HOH HOH . O 7 HOH A 35 635 29 HOH HOH . O 7 HOH A 36 636 80 HOH HOH . O 7 HOH A 37 637 20 HOH HOH . O 7 HOH A 38 638 34 HOH HOH . O 7 HOH A 39 639 10 HOH HOH . O 7 HOH A 40 640 49 HOH HOH . O 7 HOH A 41 641 40 HOH HOH . O 7 HOH A 42 642 15 HOH HOH . O 7 HOH A 43 643 60 HOH HOH . O 7 HOH A 44 644 9 HOH HOH . O 7 HOH A 45 645 58 HOH HOH . O 7 HOH A 46 646 73 HOH HOH . O 7 HOH A 47 647 38 HOH HOH . O 7 HOH A 48 648 56 HOH HOH . O 7 HOH A 49 649 19 HOH HOH . O 7 HOH A 50 650 2 HOH HOH . O 7 HOH A 51 651 32 HOH HOH . O 7 HOH A 52 652 70 HOH HOH . O 7 HOH A 53 653 46 HOH HOH . O 7 HOH A 54 654 33 HOH HOH . O 7 HOH A 55 655 17 HOH HOH . O 7 HOH A 56 656 35 HOH HOH . O 7 HOH A 57 657 50 HOH HOH . O 7 HOH A 58 658 23 HOH HOH . O 7 HOH A 59 659 59 HOH HOH . O 7 HOH A 60 660 13 HOH HOH . O 7 HOH A 61 661 48 HOH HOH . O 7 HOH A 62 662 69 HOH HOH . O 7 HOH A 63 663 22 HOH HOH . O 7 HOH A 64 664 55 HOH HOH . O 7 HOH A 65 665 66 HOH HOH . O 7 HOH A 66 666 72 HOH HOH . O 7 HOH A 67 667 47 HOH HOH . O 7 HOH A 68 668 5 HOH HOH . O 7 HOH A 69 669 44 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 6TL . . . K 5 -64.691 -13.431 -24.877 1 35.77 ? C1 6TL 510 A 1 HETATM 2 C C2 6TL . . . K 5 -65.225 -12.486 -25.75 1 37.19 ? C2 6TL 510 A 1 HETATM 3 C C3 6TL . . . K 5 -64.9 -12.5 -27.1 1 36.31 ? C3 6TL 510 A 1 HETATM 4 N N6 6TL . . . K 5 -52.926 -16.222 -32.455 1 37.06 ? N6 6TL 510 A 1 HETATM 5 C C7 6TL . . . K 5 -62.628 -15.297 -27.488 1 41.18 ? C7 6TL 510 A 1 HETATM 6 C C8 6TL . . . K 5 -62.728 -14.837 -28.768 1 40.9 ? C8 6TL 510 A 1 HETATM 7 C C9 6TL . . . K 5 -61.897 -16.531 -27.034 1 47.35 ? C9 6TL 510 A 1 HETATM 8 C C10 6TL . . . K 5 -60.848 -16.378 -25.942 1 52.18 ? C10 6TL 510 A 1 HETATM 9 C C11 6TL . . . K 5 -58.612 -15.843 -26.815 1 49.92 ? C11 6TL 510 A 1 HETATM 10 C C12 6TL . . . K 5 -57.565 -14.731 -26.992 1 48.57 ? C12 6TL 510 A 1 HETATM 11 C C13 6TL . . . K 5 -58.552 -13.555 -25.105 1 52.68 ? C13 6TL 510 A 1 HETATM 12 C C14 6TL . . . K 5 -59.513 -14.695 -24.911 1 53.19 ? C14 6TL 510 A 1 HETATM 13 C C15 6TL . . . K 5 -56.278 -12.955 -25.714 1 44.83 ? C15 6TL 510 A 1 HETATM 14 C C16 6TL . . . K 5 -56.662 -11.609 -25.641 1 44.25 ? C16 6TL 510 A 1 HETATM 15 C C19 6TL . . . K 5 -53.967 -12.238 -25.728 1 42.17 ? C19 6TL 510 A 1 HETATM 16 C C20 6TL . . . K 5 -54.9 -13.285 -25.752 1 41.2 ? C20 6TL 510 A 1 HETATM 17 C C21 6TL . . . K 5 -54.36 -14.676 -25.81 1 40.17 ? C21 6TL 510 A 1 HETATM 18 C C22 6TL . . . K 5 -53.41 -15.027 -26.775 1 40.33 ? C22 6TL 510 A 1 HETATM 19 C C24 6TL . . . K 5 -53.287 -17.204 -25.848 1 37 ? C24 6TL 510 A 1 HETATM 20 C C27 6TL . . . K 5 -51.398 -18.351 -29.649 1 35.31 ? C27 6TL 510 A 1 HETATM 21 C C30 6TL . . . K 5 -54.143 -16.526 -33.212 1 40.83 ? C30 6TL 510 A 1 HETATM 22 C C31 6TL . . . K 5 -54.289 -15.342 -34.118 1 41.8 ? C31 6TL 510 A 1 HETATM 23 C C32 6TL . . . K 5 -53.571 -14.332 -33.639 1 41.64 ? C32 6TL 510 A 1 HETATM 24 C C33 6TL . . . K 5 -52.919 -14.76 -32.362 1 38.22 ? C33 6TL 510 A 1 HETATM 25 O O 6TL . . . K 5 -50.954 -15.978 -28.207 1 38.68 ? O 6TL 510 A 1 HETATM 26 C C26 6TL . . . K 5 -51.9 -16.701 -27.888 1 38.64 ? C26 6TL 510 A 1 HETATM 27 N N5 6TL . . . K 5 -52.158 -17.857 -28.508 1 38.84 ? N5 6TL 510 A 1 HETATM 28 C C28 6TL . . . K 5 -51.487 -17.446 -30.853 1 34.32 ? C28 6TL 510 A 1 HETATM 29 C C29 6TL . . . K 5 -52.866 -16.892 -31.16 1 36.08 ? C29 6TL 510 A 1 HETATM 30 C C23 6TL . . . K 5 -52.859 -16.301 -26.81 1 37.32 ? C23 6TL 510 A 1 HETATM 31 N N4 6TL . . . K 5 -54.213 -16.917 -24.924 1 34.7 ? N4 6TL 510 A 1 HETATM 32 C C25 6TL . . . K 5 -54.721 -15.678 -24.915 1 35.3 ? C25 6TL 510 A 1 HETATM 33 C C18 6TL . . . K 5 -54.372 -10.911 -25.68 1 42.84 ? C18 6TL 510 A 1 HETATM 34 C C17 6TL . . . K 5 -55.712 -10.6 -25.637 1 43.12 ? C17 6TL 510 A 1 HETATM 35 N N3 6TL . . . K 5 -57.307 -14.011 -25.734 1 49.83 ? N3 6TL 510 A 1 HETATM 36 N N2 6TL . . . K 5 -59.851 -15.316 -26.197 1 54.1 ? N2 6TL 510 A 1 HETATM 37 C C5 6TL . . . K 5 -63.468 -14.446 -26.689 1 40.65 ? C5 6TL 510 A 1 HETATM 38 C C6 6TL . . . K 5 -63.813 -14.407 -25.335 1 39.37 ? C6 6TL 510 A 1 HETATM 39 N N1 6TL . . . K 5 -63.575 -13.761 -28.824 1 40.99 ? N1 6TL 510 A 1 HETATM 40 C C4 6TL . . . K 5 -64.036 -13.491 -27.558 1 39.84 ? C4 6TL 510 A 1 # _model_server_stats.io_time_ms 281 _model_server_stats.parse_time_ms 158 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 787 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 40 #