data_5KJT # _model_server_result.job_id F3VVHoHec8sIjmN66nO1Zw _model_server_result.datetime_utc '2024-11-27 19:04:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kjt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 5KJT # _exptl.entry_id 5KJT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 913.677 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description p-coumaroyl-CoA _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5KJT _cell.length_a 99.19 _cell.length_b 99.19 _cell.length_c 84.63 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KJT _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C30 H42 N7 O18 P3 S' _chem_comp.formula_weight 913.677 _chem_comp.id WCA _chem_comp.mon_nstd_flag . _chem_comp.name p-coumaroyl-CoA _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAJ CBS WCA sing 376 n n CBS CAT WCA doub 377 n y CBS CAU WCA sing 378 n y CAT CAV WCA sing 379 n y CAU CAW WCA doub 380 n y CAV CBT WCA doub 381 n y CAW CBT WCA sing 382 n y CBT CAR WCA sing 383 n n CAR CAQ WCA doub 384 e n N1 C2 WCA doub 385 n y N1 C6 WCA sing 386 n y CAQ CBP WCA sing 387 n n N6 C6 WCA sing 388 n n C2 N3 WCA sing 389 n y CBP OAD WCA doub 390 n n CBP SBO WCA sing 391 n n C6 C5 WCA doub 392 n y CAY NBH WCA sing 393 n n CAY CBA WCA sing 394 n n SBO CBA WCA sing 395 n n NBH CBQ WCA sing 396 n n N3 C4 WCA doub 397 n y CBQ OAE WCA doub 398 n n CBQ CBB WCA sing 399 n n C5 C4 WCA sing 400 n y C5 N7 WCA sing 401 n y CAZ CBB WCA sing 402 n n CAZ NBI WCA sing 403 n n C4 N9 WCA sing 404 n y NBI CBR WCA sing 405 n n CAA CCD WCA sing 406 n n N7 C8 WCA doub 407 n y OAF CBR WCA doub 408 n n CBR CBX WCA sing 409 n n N9 C8 WCA sing 410 n y N9 C1' WCA sing 411 n n CAB CCD WCA sing 412 n n CCD CBX WCA sing 413 n n CCD CBD WCA sing 414 n n C1' O4' WCA sing 415 n n C1' C2' WCA sing 416 n n CBX OAK WCA sing 417 n n O4' C4' WCA sing 418 n n CBD OBK WCA sing 419 n n O2' C2' WCA sing 420 n n C2' C3' WCA sing 421 n n C4' C3' WCA sing 422 n n C4' C5' WCA sing 423 n n O3' C3' WCA sing 424 n n O3' PCE WCA sing 425 n n OBK PCG WCA sing 426 n n OAI PCG WCA doub 427 n n OAN PCE WCA doub 428 n n C5' O5' WCA sing 429 n n PCG OAP WCA sing 430 n n PCG OBN WCA sing 431 n n O5' PCF WCA sing 432 n n PCE OAG WCA sing 433 n n PCE OAM WCA sing 434 n n OBN PCF WCA sing 435 n n PCF OAH WCA doub 436 n n PCF OAO WCA sing 437 n n C8 H1 WCA sing 438 n n CAV H2 WCA sing 439 n n CAT H3 WCA sing 440 n n OAJ H4 WCA sing 441 n n CAU H5 WCA sing 442 n n CAW H6 WCA sing 443 n n CAR H7 WCA sing 444 n n CAQ H9 WCA sing 445 n n CBA H11 WCA sing 446 n n CBA H12 WCA sing 447 n n CAY H13 WCA sing 448 n n CAY H14 WCA sing 449 n n NBH H15 WCA sing 450 n n CBB H16 WCA sing 451 n n CBB H17 WCA sing 452 n n CAZ H18 WCA sing 453 n n CAZ H19 WCA sing 454 n n NBI H20 WCA sing 455 n n CBX H21 WCA sing 456 n n OAK H22 WCA sing 457 n n CAA H23 WCA sing 458 n n CAA H24 WCA sing 459 n n CAA H25 WCA sing 460 n n CAB H26 WCA sing 461 n n CAB H27 WCA sing 462 n n CAB H28 WCA sing 463 n n CBD H29 WCA sing 464 n n CBD H30 WCA sing 465 n n OAP H31 WCA sing 466 n n OAO H32 WCA sing 467 n n C5' H33 WCA sing 468 n n C5' H34 WCA sing 469 n n C4' H35 WCA sing 470 n n C3' H36 WCA sing 471 n n OAM H37 WCA sing 472 n n OAG H38 WCA sing 473 n n C2' H39 WCA sing 474 n n O2' H40 WCA sing 475 n n C1' H41 WCA sing 476 n n C2 H42 WCA sing 477 n n N6 H43 WCA sing 478 n n N6 H44 WCA sing 479 n n # _atom_sites.entry_id 5KJT _atom_sites.fract_transf_matrix[1][1] 0.010082 _atom_sites.fract_transf_matrix[1][2] 0.005821 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011641 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011816 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 WCA A 1 501 1 WCA WCA . C 3 HOH A 1 601 30 HOH HOH . C 3 HOH A 2 602 78 HOH HOH . C 3 HOH A 3 603 56 HOH HOH . C 3 HOH A 4 604 99 HOH HOH . C 3 HOH A 5 605 91 HOH HOH . C 3 HOH A 6 606 37 HOH HOH . C 3 HOH A 7 607 12 HOH HOH . C 3 HOH A 8 608 1 HOH HOH . C 3 HOH A 9 609 5 HOH HOH . C 3 HOH A 10 610 64 HOH HOH . C 3 HOH A 11 611 7 HOH HOH . C 3 HOH A 12 612 87 HOH HOH . C 3 HOH A 13 613 55 HOH HOH . C 3 HOH A 14 614 41 HOH HOH . C 3 HOH A 15 615 13 HOH HOH . C 3 HOH A 16 616 17 HOH HOH . C 3 HOH A 17 617 58 HOH HOH . C 3 HOH A 18 618 14 HOH HOH . C 3 HOH A 19 619 16 HOH HOH . C 3 HOH A 20 620 49 HOH HOH . C 3 HOH A 21 621 57 HOH HOH . C 3 HOH A 22 622 10 HOH HOH . C 3 HOH A 23 623 33 HOH HOH . C 3 HOH A 24 624 80 HOH HOH . C 3 HOH A 25 625 24 HOH HOH . C 3 HOH A 26 626 66 HOH HOH . C 3 HOH A 27 627 73 HOH HOH . C 3 HOH A 28 628 47 HOH HOH . C 3 HOH A 29 629 2 HOH HOH . C 3 HOH A 30 630 81 HOH HOH . C 3 HOH A 31 631 28 HOH HOH . C 3 HOH A 32 632 54 HOH HOH . C 3 HOH A 33 633 35 HOH HOH . C 3 HOH A 34 634 36 HOH HOH . C 3 HOH A 35 635 65 HOH HOH . C 3 HOH A 36 636 32 HOH HOH . C 3 HOH A 37 637 20 HOH HOH . C 3 HOH A 38 638 8 HOH HOH . C 3 HOH A 39 639 53 HOH HOH . C 3 HOH A 40 640 42 HOH HOH . C 3 HOH A 41 641 25 HOH HOH . C 3 HOH A 42 642 67 HOH HOH . C 3 HOH A 43 643 18 HOH HOH . C 3 HOH A 44 644 52 HOH HOH . C 3 HOH A 45 645 83 HOH HOH . C 3 HOH A 46 646 29 HOH HOH . C 3 HOH A 47 647 96 HOH HOH . C 3 HOH A 48 648 103 HOH HOH . C 3 HOH A 49 649 100 HOH HOH . C 3 HOH A 50 650 46 HOH HOH . C 3 HOH A 51 651 79 HOH HOH . C 3 HOH A 52 652 89 HOH HOH . C 3 HOH A 53 653 23 HOH HOH . C 3 HOH A 54 654 27 HOH HOH . C 3 HOH A 55 655 38 HOH HOH . C 3 HOH A 56 656 15 HOH HOH . C 3 HOH A 57 657 84 HOH HOH . C 3 HOH A 58 658 4 HOH HOH . C 3 HOH A 59 659 51 HOH HOH . C 3 HOH A 60 660 44 HOH HOH . C 3 HOH A 61 661 60 HOH HOH . C 3 HOH A 62 662 11 HOH HOH . C 3 HOH A 63 663 3 HOH HOH . C 3 HOH A 64 664 31 HOH HOH . C 3 HOH A 65 665 48 HOH HOH . C 3 HOH A 66 666 77 HOH HOH . C 3 HOH A 67 667 26 HOH HOH . C 3 HOH A 68 668 74 HOH HOH . C 3 HOH A 69 669 62 HOH HOH . C 3 HOH A 70 670 45 HOH HOH . C 3 HOH A 71 671 92 HOH HOH . C 3 HOH A 72 672 63 HOH HOH . C 3 HOH A 73 673 69 HOH HOH . C 3 HOH A 74 674 98 HOH HOH . C 3 HOH A 75 675 9 HOH HOH . C 3 HOH A 76 676 22 HOH HOH . C 3 HOH A 77 677 68 HOH HOH . C 3 HOH A 78 678 72 HOH HOH . C 3 HOH A 79 679 50 HOH HOH . C 3 HOH A 80 680 93 HOH HOH . C 3 HOH A 81 681 94 HOH HOH . C 3 HOH A 82 682 19 HOH HOH . C 3 HOH A 83 683 95 HOH HOH . C 3 HOH A 84 684 101 HOH HOH . C 3 HOH A 85 685 21 HOH HOH . C 3 HOH A 86 686 59 HOH HOH . C 3 HOH A 87 687 82 HOH HOH . C 3 HOH A 88 688 97 HOH HOH . C 3 HOH A 89 689 102 HOH HOH . C 3 HOH A 90 690 34 HOH HOH . C 3 HOH A 91 691 40 HOH HOH . C 3 HOH A 92 692 43 HOH HOH . C 3 HOH A 93 693 88 HOH HOH . C 3 HOH A 94 694 75 HOH HOH . C 3 HOH A 95 695 70 HOH HOH . C 3 HOH A 96 696 76 HOH HOH . C 3 HOH A 97 697 39 HOH HOH . C 3 HOH A 98 698 90 HOH HOH . C 3 HOH A 99 699 61 HOH HOH . C 3 HOH A 100 700 71 HOH HOH . C 3 HOH A 101 701 85 HOH HOH . C 3 HOH A 102 702 86 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 WCA . . . B 2 -79.826 135.587 -16.297 0 95.37 ? C4 WCA 501 A 1 HETATM 2 C C5 WCA . . . B 2 -79.282 136.768 -16.592 0 95.3 ? C5 WCA 501 A 1 HETATM 3 C C6 WCA . . . B 2 -80.031 137.766 -17.057 1 96.78 ? C6 WCA 501 A 1 HETATM 4 C C8 WCA . . . B 2 -77.715 135.47 -15.882 1 93.54 ? C8 WCA 501 A 1 HETATM 5 N N1 WCA . . . B 2 -81.349 137.633 -17.248 0.56 97.29 ? N1 WCA 501 A 1 HETATM 6 N N3 WCA . . . B 2 -81.141 135.38 -16.462 1 96.19 ? N3 WCA 501 A 1 HETATM 7 C CAV WCA . . . B 2 -67.761 124.641 3.568 0.89 55.8 ? CAV WCA 501 A 1 HETATM 8 C CAT WCA . . . B 2 -67.842 123.261 3.428 0.8 54.81 ? CAT WCA 501 A 1 HETATM 9 C CBS WCA . . . B 2 -69.084 122.638 3.385 0.66 53.34 ? CBS WCA 501 A 1 HETATM 10 O OAJ WCA . . . B 2 -69.164 121.288 3.248 1 52.27 ? OAJ WCA 501 A 1 HETATM 11 C CAU WCA . . . B 2 -70.245 123.396 3.482 1 53.37 ? CAU WCA 501 A 1 HETATM 12 C CAW WCA . . . B 2 -70.164 124.777 3.622 1 54.8 ? CAW WCA 501 A 1 HETATM 13 C CBT WCA . . . B 2 -68.922 125.399 3.665 0.31 56.7 ? CBT WCA 501 A 1 HETATM 14 C CAR WCA . . . B 2 -68.841 126.78 3.806 1 59.55 ? CAR WCA 501 A 1 HETATM 15 C CAQ WCA . . . B 2 -69.61 127.455 2.668 0.94 61.95 ? CAQ WCA 501 A 1 HETATM 16 C CBP WCA . . . B 2 -69.742 128.951 2.958 0.64 63.8 ? CBP WCA 501 A 1 HETATM 17 O OAD WCA . . . B 2 -68.82 129.58 3.475 1 65.31 ? OAD WCA 501 A 1 HETATM 18 S SBO WCA . . . B 2 -71.276 129.66 2.502 0.75 81.56 ? SBO WCA 501 A 1 HETATM 19 C CBA WCA . . . B 2 -71.191 129.458 0.685 1 65.91 ? CBA WCA 501 A 1 HETATM 20 C CAY WCA . . . B 2 -72.545 129.647 -0.001 1 66.85 ? CAY WCA 501 A 1 HETATM 21 N NBH WCA . . . B 2 -72.351 129.719 -1.457 1 67.59 ? NBH WCA 501 A 1 HETATM 22 C CBQ WCA . . . B 2 -73.231 130.331 -2.261 0 68.54 ? CBQ WCA 501 A 1 HETATM 23 O OAE WCA . . . B 2 -74.26 130.878 -1.866 1 69.1 ? OAE WCA 501 A 1 HETATM 24 C CBB WCA . . . B 2 -72.871 130.31 -3.748 1 68.47 ? CBB WCA 501 A 1 HETATM 25 C CAZ WCA . . . B 2 -72.894 131.738 -4.299 1 68.77 ? CAZ WCA 501 A 1 HETATM 26 N NBI WCA . . . B 2 -74.042 131.896 -5.203 1 69.15 ? NBI WCA 501 A 1 HETATM 27 C CBR WCA . . . B 2 -73.975 132.65 -6.309 0.55 69.88 ? CBR WCA 501 A 1 HETATM 28 O OAF WCA . . . B 2 -72.97 133.265 -6.663 0.79 70.32 ? OAF WCA 501 A 1 HETATM 29 C CBX WCA . . . B 2 -75.263 132.703 -7.134 1 90.42 ? CBX WCA 501 A 1 HETATM 30 O OAK WCA . . . B 2 -74.955 132.494 -8.515 0.4 90.61 ? OAK WCA 501 A 1 HETATM 31 C CCD WCA . . . B 2 -75.925 134.071 -6.96 0 83.27 ? CCD WCA 501 A 1 HETATM 32 C CAA WCA . . . B 2 -74.921 135.171 -7.311 1 81.52 ? CAA WCA 501 A 1 HETATM 33 C CAB WCA . . . B 2 -76.377 134.238 -5.508 1 83.74 ? CAB WCA 501 A 1 HETATM 34 C CBD WCA . . . B 2 -77.138 134.173 -7.887 1 84.96 ? CBD WCA 501 A 1 HETATM 35 O OBK WCA . . . B 2 -78.219 133.41 -7.344 0.71 85.9 ? OBK WCA 501 A 1 HETATM 36 P PCG WCA . . . B 2 -79.692 133.547 -7.97 0 113.82 ? PCG WCA 501 A 1 HETATM 37 O OAP WCA . . . B 2 -80.639 132.773 -7.138 1 115.21 -1 OAP WCA 501 A 1 HETATM 38 O OAI WCA . . . B 2 -79.963 134.973 -8.249 1 112.78 ? OAI WCA 501 A 1 HETATM 39 O OBN WCA . . . B 2 -79.523 132.784 -9.378 1 105.54 ? OBN WCA 501 A 1 HETATM 40 P PCF WCA . . . B 2 -80.763 131.981 -10.01 0 120.86 ? PCF WCA 501 A 1 HETATM 41 O OAO WCA . . . B 2 -82.013 132.704 -9.693 1 121.07 -1 OAO WCA 501 A 1 HETATM 42 O OAH WCA . . . B 2 -80.637 130.551 -9.658 0.79 120.66 ? OAH WCA 501 A 1 HETATM 43 O O5' WCA . . . B 2 -80.483 132.134 -11.588 0.61 101.19 ? O5' WCA 501 A 1 HETATM 44 C C5' WCA . . . B 2 -79.156 131.973 -12.098 1 100.92 ? C5' WCA 501 A 1 HETATM 45 C C4' WCA . . . B 2 -79.187 132.02 -13.627 1 95.13 ? C4' WCA 501 A 1 HETATM 46 O O4' WCA . . . B 2 -79.473 133.358 -14.059 0 95.63 ? O4' WCA 501 A 1 HETATM 47 C C3' WCA . . . B 2 -77.794 131.749 -14.171 0 96.46 ? C3' WCA 501 A 1 HETATM 48 O O3' WCA . . . B 2 -77.701 130.379 -14.588 0.27 96.25 ? O3' WCA 501 A 1 HETATM 49 P PCE WCA . . . B 2 -76.721 129.384 -13.832 0 119.23 ? PCE WCA 501 A 1 HETATM 50 O OAM WCA . . . B 2 -76.219 128.566 -14.958 0.33 120.01 -1 OAM WCA 501 A 1 HETATM 51 O OAN WCA . . . B 2 -77.601 128.666 -12.9 1 118.39 ? OAN WCA 501 A 1 HETATM 52 O OAG WCA . . . B 2 -75.718 130.27 -13.226 0.98 118.81 -1 OAG WCA 501 A 1 HETATM 53 C C2' WCA . . . B 2 -77.689 132.658 -15.386 0.94 99.63 ? C2' WCA 501 A 1 HETATM 54 O O2' WCA . . . B 2 -77.546 131.86 -16.57 0.92 101.59 ? O2' WCA 501 A 1 HETATM 55 C C1' WCA . . . B 2 -79.025 133.384 -15.422 1 95.11 ? C1' WCA 501 A 1 HETATM 56 N N9 WCA . . . B 2 -78.857 134.789 -15.859 1 94.55 ? N9 WCA 501 A 1 HETATM 57 N N7 WCA . . . B 2 -77.979 136.692 -16.335 0 93.94 ? N7 WCA 501 A 1 HETATM 58 C C2 WCA . . . B 2 -81.95 136.41 -16.949 1 97.12 ? C2 WCA 501 A 1 HETATM 59 N N6 WCA . . . B 2 -79.396 138.904 -17.322 1 97.25 ? N6 WCA 501 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 59 #