data_5KJU # _model_server_result.job_id Lk67tO9V1z7JheUnE9bt0A _model_server_result.datetime_utc '2024-11-05 00:52:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kju # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":800}' # _entry.id 5KJU # _exptl.entry_id 5KJU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 320.294 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description '(3~{R},4~{S},5~{R})-3-[(~{E})-3-(4-hydroxyphenyl)prop-2-enoyl]oxy-4,5-bis(oxidanyl)cyclohexene-1-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5KJU _cell.length_a 99.48 _cell.length_b 99.48 _cell.length_c 82.56 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KJU _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H16 O7' _chem_comp.formula_weight 320.294 _chem_comp.id 6TO _chem_comp.mon_nstd_flag . _chem_comp.name '(3~{R},4~{S},5~{R})-3-[(~{E})-3-(4-hydroxyphenyl)prop-2-enoyl]oxy-4,5-bis(oxidanyl)cyclohexene-1-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O06 C16 6TO doub 1 n n O02 C09 6TO doub 2 n n C07 C04 6TO sing 3 n n C07 C08 6TO doub 4 e n C05 C04 6TO doub 5 n y C05 C06 6TO sing 6 n y C04 C03 6TO sing 7 n y C09 C08 6TO sing 8 n n C09 O03 6TO sing 9 n n C06 C01 6TO doub 10 n y C03 C02 6TO doub 11 n y C01 C02 6TO sing 12 n y C01 O01 6TO sing 13 n n C16 O07 6TO sing 14 n n C16 C14 6TO sing 15 n n O03 C12 6TO sing 16 n n C13 C12 6TO sing 17 n n C13 C14 6TO doub 18 n n C12 C11 6TO sing 19 n n C14 C15 6TO sing 20 n n C15 C10 6TO sing 21 n n C11 C10 6TO sing 22 n n C11 O04 6TO sing 23 n n C10 O05 6TO sing 24 n n C10 H1 6TO sing 25 n n C13 H2 6TO sing 26 n n C15 H4 6TO sing 27 n n C15 H5 6TO sing 28 n n C02 H6 6TO sing 29 n n C03 H7 6TO sing 30 n n C05 H8 6TO sing 31 n n C06 H9 6TO sing 32 n n O01 H10 6TO sing 33 n n C07 H11 6TO sing 34 n n C08 H12 6TO sing 35 n n C11 H13 6TO sing 36 n n C12 H14 6TO sing 37 n n O04 H16 6TO sing 38 n n O05 H17 6TO sing 39 n n O07 H18 6TO sing 40 n n # _atom_sites.entry_id 5KJU _atom_sites.fract_transf_matrix[1][1] 0.010052 _atom_sites.fract_transf_matrix[1][2] 0.005804 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011607 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012112 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6TO A 1 800 800 6TO LIG . C 3 HOH A 1 901 43 HOH HOH . C 3 HOH A 2 902 49 HOH HOH . C 3 HOH A 3 903 31 HOH HOH . C 3 HOH A 4 904 24 HOH HOH . C 3 HOH A 5 905 154 HOH HOH . C 3 HOH A 6 906 169 HOH HOH . C 3 HOH A 7 907 5 HOH HOH . C 3 HOH A 8 908 9 HOH HOH . C 3 HOH A 9 909 13 HOH HOH . C 3 HOH A 10 910 186 HOH HOH . C 3 HOH A 11 911 124 HOH HOH . C 3 HOH A 12 912 116 HOH HOH . C 3 HOH A 13 913 146 HOH HOH . C 3 HOH A 14 914 14 HOH HOH . C 3 HOH A 15 915 143 HOH HOH . C 3 HOH A 16 916 76 HOH HOH . C 3 HOH A 17 917 160 HOH HOH . C 3 HOH A 18 918 66 HOH HOH . C 3 HOH A 19 919 23 HOH HOH . C 3 HOH A 20 920 36 HOH HOH . C 3 HOH A 21 921 60 HOH HOH . C 3 HOH A 22 922 127 HOH HOH . C 3 HOH A 23 923 150 HOH HOH . C 3 HOH A 24 924 63 HOH HOH . C 3 HOH A 25 925 184 HOH HOH . C 3 HOH A 26 926 157 HOH HOH . C 3 HOH A 27 927 53 HOH HOH . C 3 HOH A 28 928 155 HOH HOH . C 3 HOH A 29 929 86 HOH HOH . C 3 HOH A 30 930 50 HOH HOH . C 3 HOH A 31 931 109 HOH HOH . C 3 HOH A 32 932 74 HOH HOH . C 3 HOH A 33 933 33 HOH HOH . C 3 HOH A 34 934 97 HOH HOH . C 3 HOH A 35 935 10 HOH HOH . C 3 HOH A 36 936 147 HOH HOH . C 3 HOH A 37 937 48 HOH HOH . C 3 HOH A 38 938 144 HOH HOH . C 3 HOH A 39 939 39 HOH HOH . C 3 HOH A 40 940 27 HOH HOH . C 3 HOH A 41 941 32 HOH HOH . C 3 HOH A 42 942 170 HOH HOH . C 3 HOH A 43 943 193 HOH HOH . C 3 HOH A 44 944 6 HOH HOH . C 3 HOH A 45 945 16 HOH HOH . C 3 HOH A 46 946 38 HOH HOH . C 3 HOH A 47 947 70 HOH HOH . C 3 HOH A 48 948 47 HOH HOH . C 3 HOH A 49 949 7 HOH HOH . C 3 HOH A 50 950 4 HOH HOH . C 3 HOH A 51 951 114 HOH HOH . C 3 HOH A 52 952 40 HOH HOH . C 3 HOH A 53 953 175 HOH HOH . C 3 HOH A 54 954 42 HOH HOH . C 3 HOH A 55 955 132 HOH HOH . C 3 HOH A 56 956 34 HOH HOH . C 3 HOH A 57 957 72 HOH HOH . C 3 HOH A 58 958 123 HOH HOH . C 3 HOH A 59 959 151 HOH HOH . C 3 HOH A 60 960 82 HOH HOH . C 3 HOH A 61 961 61 HOH HOH . C 3 HOH A 62 962 69 HOH HOH . C 3 HOH A 63 963 142 HOH HOH . C 3 HOH A 64 964 30 HOH HOH . C 3 HOH A 65 965 78 HOH HOH . C 3 HOH A 66 966 15 HOH HOH . C 3 HOH A 67 967 46 HOH HOH . C 3 HOH A 68 968 117 HOH HOH . C 3 HOH A 69 969 108 HOH HOH . C 3 HOH A 70 970 77 HOH HOH . C 3 HOH A 71 971 17 HOH HOH . C 3 HOH A 72 972 35 HOH HOH . C 3 HOH A 73 973 178 HOH HOH . C 3 HOH A 74 974 41 HOH HOH . C 3 HOH A 75 975 111 HOH HOH . C 3 HOH A 76 976 95 HOH HOH . C 3 HOH A 77 977 75 HOH HOH . C 3 HOH A 78 978 121 HOH HOH . C 3 HOH A 79 979 182 HOH HOH . C 3 HOH A 80 980 79 HOH HOH . C 3 HOH A 81 981 21 HOH HOH . C 3 HOH A 82 982 179 HOH HOH . C 3 HOH A 83 983 51 HOH HOH . C 3 HOH A 84 984 29 HOH HOH . C 3 HOH A 85 985 8 HOH HOH . C 3 HOH A 86 986 171 HOH HOH . C 3 HOH A 87 987 140 HOH HOH . C 3 HOH A 88 988 45 HOH HOH . C 3 HOH A 89 989 139 HOH HOH . C 3 HOH A 90 990 56 HOH HOH . C 3 HOH A 91 991 106 HOH HOH . C 3 HOH A 92 992 2 HOH HOH . C 3 HOH A 93 993 93 HOH HOH . C 3 HOH A 94 994 22 HOH HOH . C 3 HOH A 95 995 19 HOH HOH . C 3 HOH A 96 996 163 HOH HOH . C 3 HOH A 97 997 11 HOH HOH . C 3 HOH A 98 998 133 HOH HOH . C 3 HOH A 99 999 54 HOH HOH . C 3 HOH A 100 1000 57 HOH HOH . C 3 HOH A 101 1001 90 HOH HOH . C 3 HOH A 102 1002 67 HOH HOH . C 3 HOH A 103 1003 181 HOH HOH . C 3 HOH A 104 1004 1 HOH HOH . C 3 HOH A 105 1005 180 HOH HOH . C 3 HOH A 106 1006 88 HOH HOH . C 3 HOH A 107 1007 85 HOH HOH . C 3 HOH A 108 1008 20 HOH HOH . C 3 HOH A 109 1009 110 HOH HOH . C 3 HOH A 110 1010 37 HOH HOH . C 3 HOH A 111 1011 126 HOH HOH . C 3 HOH A 112 1012 3 HOH HOH . C 3 HOH A 113 1013 149 HOH HOH . C 3 HOH A 114 1014 174 HOH HOH . C 3 HOH A 115 1015 81 HOH HOH . C 3 HOH A 116 1016 58 HOH HOH . C 3 HOH A 117 1017 183 HOH HOH . C 3 HOH A 118 1018 96 HOH HOH . C 3 HOH A 119 1019 120 HOH HOH . C 3 HOH A 120 1020 107 HOH HOH . C 3 HOH A 121 1021 73 HOH HOH . C 3 HOH A 122 1022 98 HOH HOH . C 3 HOH A 123 1023 198 HOH HOH . C 3 HOH A 124 1024 18 HOH HOH . C 3 HOH A 125 1025 55 HOH HOH . C 3 HOH A 126 1026 91 HOH HOH . C 3 HOH A 127 1027 138 HOH HOH . C 3 HOH A 128 1028 153 HOH HOH . C 3 HOH A 129 1029 25 HOH HOH . C 3 HOH A 130 1030 164 HOH HOH . C 3 HOH A 131 1031 102 HOH HOH . C 3 HOH A 132 1032 12 HOH HOH . C 3 HOH A 133 1033 99 HOH HOH . C 3 HOH A 134 1034 115 HOH HOH . C 3 HOH A 135 1035 44 HOH HOH . C 3 HOH A 136 1036 168 HOH HOH . C 3 HOH A 137 1037 28 HOH HOH . C 3 HOH A 138 1038 158 HOH HOH . C 3 HOH A 139 1039 64 HOH HOH . C 3 HOH A 140 1040 192 HOH HOH . C 3 HOH A 141 1041 59 HOH HOH . C 3 HOH A 142 1042 145 HOH HOH . C 3 HOH A 143 1043 156 HOH HOH . C 3 HOH A 144 1044 80 HOH HOH . C 3 HOH A 145 1045 68 HOH HOH . C 3 HOH A 146 1046 26 HOH HOH . C 3 HOH A 147 1047 172 HOH HOH . C 3 HOH A 148 1048 113 HOH HOH . C 3 HOH A 149 1049 167 HOH HOH . C 3 HOH A 150 1050 148 HOH HOH . C 3 HOH A 151 1051 159 HOH HOH . C 3 HOH A 152 1052 52 HOH HOH . C 3 HOH A 153 1053 65 HOH HOH . C 3 HOH A 154 1054 141 HOH HOH . C 3 HOH A 155 1055 130 HOH HOH . C 3 HOH A 156 1056 87 HOH HOH . C 3 HOH A 157 1057 100 HOH HOH . C 3 HOH A 158 1058 196 HOH HOH . C 3 HOH A 159 1059 71 HOH HOH . C 3 HOH A 160 1060 84 HOH HOH . C 3 HOH A 161 1061 188 HOH HOH . C 3 HOH A 162 1062 195 HOH HOH . C 3 HOH A 163 1063 112 HOH HOH . C 3 HOH A 164 1064 194 HOH HOH . C 3 HOH A 165 1065 161 HOH HOH . C 3 HOH A 166 1066 62 HOH HOH . C 3 HOH A 167 1067 152 HOH HOH . C 3 HOH A 168 1068 103 HOH HOH . C 3 HOH A 169 1069 131 HOH HOH . C 3 HOH A 170 1070 122 HOH HOH . C 3 HOH A 171 1071 190 HOH HOH . C 3 HOH A 172 1072 136 HOH HOH . C 3 HOH A 173 1073 125 HOH HOH . C 3 HOH A 174 1074 187 HOH HOH . C 3 HOH A 175 1075 177 HOH HOH . C 3 HOH A 176 1076 104 HOH HOH . C 3 HOH A 177 1077 162 HOH HOH . C 3 HOH A 178 1078 128 HOH HOH . C 3 HOH A 179 1079 101 HOH HOH . C 3 HOH A 180 1080 189 HOH HOH . C 3 HOH A 181 1081 92 HOH HOH . C 3 HOH A 182 1082 137 HOH HOH . C 3 HOH A 183 1083 197 HOH HOH . C 3 HOH A 184 1084 134 HOH HOH . C 3 HOH A 185 1085 119 HOH HOH . C 3 HOH A 186 1086 105 HOH HOH . C 3 HOH A 187 1087 173 HOH HOH . C 3 HOH A 188 1088 191 HOH HOH . C 3 HOH A 189 1089 185 HOH HOH . C 3 HOH A 190 1090 83 HOH HOH . C 3 HOH A 191 1091 165 HOH HOH . C 3 HOH A 192 1092 135 HOH HOH . C 3 HOH A 193 1093 94 HOH HOH . C 3 HOH A 194 1094 199 HOH HOH . C 3 HOH A 195 1095 176 HOH HOH . C 3 HOH A 196 1096 129 HOH HOH . C 3 HOH A 197 1097 166 HOH HOH . C 3 HOH A 198 1098 89 HOH HOH . C 3 HOH A 199 1099 118 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 6TO . . . B 2 -51.162 5.728 -7.858 1 26.11 ? C10 6TO 800 A 1 HETATM 2 C C13 6TO . . . B 2 -49.922 7.315 -9.952 1 25.93 ? C13 6TO 800 A 1 HETATM 3 C C15 6TO . . . B 2 -51.98 6.73 -8.756 1 24.24 ? C15 6TO 800 A 1 HETATM 4 C C01 6TO . . . B 2 -41.641 1.776 -10.302 1 21.81 ? C01 6TO 800 A 1 HETATM 5 C C02 6TO . . . B 2 -42.662 0.811 -10.295 1 17.84 ? C02 6TO 800 A 1 HETATM 6 C C03 6TO . . . B 2 -43.978 1.223 -10.403 1 23.44 ? C03 6TO 800 A 1 HETATM 7 C C04 6TO . . . B 2 -44.302 2.588 -10.526 1 23.81 ? C04 6TO 800 A 1 HETATM 8 C C05 6TO . . . B 2 -43.256 3.549 -10.54 1 21.16 ? C05 6TO 800 A 1 HETATM 9 C C06 6TO . . . B 2 -41.931 3.163 -10.417 1 18.8 ? C06 6TO 800 A 1 HETATM 10 O O01 6TO . . . B 2 -40.327 1.39 -10.192 1 20.87 ? O01 6TO 800 A 1 HETATM 11 C C07 6TO . . . B 2 -45.656 3.061 -10.634 1 21.71 ? C07 6TO 800 A 1 HETATM 12 C C08 6TO . . . B 2 -46.173 4.252 -10.325 1 23.12 ? C08 6TO 800 A 1 HETATM 13 C C09 6TO . . . B 2 -47.625 4.471 -10.522 1 25.53 ? C09 6TO 800 A 1 HETATM 14 O O02 6TO . . . B 2 -48.394 3.591 -10.938 1 22.56 ? O02 6TO 800 A 1 HETATM 15 O O03 6TO . . . B 2 -48.063 5.719 -10.191 1 25.17 ? O03 6TO 800 A 1 HETATM 16 C C11 6TO . . . B 2 -49.889 5.167 -8.563 1 28.41 ? C11 6TO 800 A 1 HETATM 17 C C12 6TO . . . B 2 -49.458 5.903 -9.945 1 26 ? C12 6TO 800 A 1 HETATM 18 C C14 6TO . . . B 2 -51.137 7.66 -9.558 1 24.39 ? C14 6TO 800 A 1 HETATM 19 O O04 6TO . . . B 2 -48.812 5.003 -7.669 1 31.13 ? O04 6TO 800 A 1 HETATM 20 O O05 6TO . . . B 2 -51.936 4.599 -7.584 1 31.07 ? O05 6TO 800 A 1 HETATM 21 C C16 6TO . . . B 2 -51.941 8.762 -10.298 1 21.12 ? C16 6TO 800 A 1 HETATM 22 O O06 6TO . . . B 2 -51.502 9.163 -11.385 1 21.17 ? O06 6TO 800 A 1 HETATM 23 O O07 6TO . . . B 2 -53 9.163 -9.721 1 20.85 ? O07 6TO 800 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #