data_5KJX # _model_server_result.job_id 2mHkpnppA_vjb8p8hSo9uw _model_server_result.datetime_utc '2024-11-22 11:41:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kjx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5KJX # _exptl.entry_id 5KJX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 329.206 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KJX _cell.length_a 37.897 _cell.length_b 52.207 _cell.length_c 74.817 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KJX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H12 N5 O6 P' _chem_comp.formula_weight 329.206 _chem_comp.id CMP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'CYCLIC AMP;CAMP' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P CMP doub 70 n n P O2P CMP sing 71 n n P O5' CMP sing 72 n n P O3' CMP sing 73 n n O2P HOP2 CMP sing 74 n n O5' C5' CMP sing 75 n n C5' C4' CMP sing 76 n n C5' "H5'1" CMP sing 77 n n C5' "H5'2" CMP sing 78 n n C4' O4' CMP sing 79 n n C4' C3' CMP sing 80 n n C4' H4' CMP sing 81 n n O4' C1' CMP sing 82 n n C3' O3' CMP sing 83 n n C3' C2' CMP sing 84 n n C3' H3' CMP sing 85 n n C2' O2' CMP sing 86 n n C2' C1' CMP sing 87 n n C2' H2' CMP sing 88 n n O2' HO2' CMP sing 89 n n C1' N9 CMP sing 90 n n C1' H1' CMP sing 91 n n N9 C8 CMP sing 92 n y N9 C4 CMP sing 93 n y C8 N7 CMP doub 94 n y C8 H8 CMP sing 95 n n N7 C5 CMP sing 96 n y C5 C6 CMP sing 97 n y C5 C4 CMP doub 98 n y C6 N6 CMP sing 99 n n C6 N1 CMP doub 100 n y N6 HN61 CMP sing 101 n n N6 HN62 CMP sing 102 n n N1 C2 CMP sing 103 n y C2 N3 CMP doub 104 n y C2 H2 CMP sing 105 n n N3 C4 CMP sing 106 n y # _atom_sites.entry_id 5KJX _atom_sites.fract_transf_matrix[1][1] 0.026387 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019155 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013366 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CMP A 1 401 1 CMP CMP . C 3 HOH A 1 501 77 HOH HOH . C 3 HOH A 2 502 67 HOH HOH . C 3 HOH A 3 503 104 HOH HOH . C 3 HOH A 4 504 47 HOH HOH . C 3 HOH A 5 505 46 HOH HOH . C 3 HOH A 6 506 41 HOH HOH . C 3 HOH A 7 507 90 HOH HOH . C 3 HOH A 8 508 28 HOH HOH . C 3 HOH A 9 509 11 HOH HOH . C 3 HOH A 10 510 44 HOH HOH . C 3 HOH A 11 511 38 HOH HOH . C 3 HOH A 12 512 3 HOH HOH . C 3 HOH A 13 513 69 HOH HOH . C 3 HOH A 14 514 88 HOH HOH . C 3 HOH A 15 515 29 HOH HOH . C 3 HOH A 16 516 31 HOH HOH . C 3 HOH A 17 517 49 HOH HOH . C 3 HOH A 18 518 95 HOH HOH . C 3 HOH A 19 519 91 HOH HOH . C 3 HOH A 20 520 1 HOH HOH . C 3 HOH A 21 521 12 HOH HOH . C 3 HOH A 22 522 123 HOH HOH . C 3 HOH A 23 523 32 HOH HOH . C 3 HOH A 24 524 118 HOH HOH . C 3 HOH A 25 525 33 HOH HOH . C 3 HOH A 26 526 40 HOH HOH . C 3 HOH A 27 527 78 HOH HOH . C 3 HOH A 28 528 51 HOH HOH . C 3 HOH A 29 529 24 HOH HOH . C 3 HOH A 30 530 43 HOH HOH . C 3 HOH A 31 531 8 HOH HOH . C 3 HOH A 32 532 100 HOH HOH . C 3 HOH A 33 533 115 HOH HOH . C 3 HOH A 34 534 7 HOH HOH . C 3 HOH A 35 535 18 HOH HOH . C 3 HOH A 36 536 19 HOH HOH . C 3 HOH A 37 537 61 HOH HOH . C 3 HOH A 38 538 98 HOH HOH . C 3 HOH A 39 539 79 HOH HOH . C 3 HOH A 40 540 81 HOH HOH . C 3 HOH A 41 541 15 HOH HOH . C 3 HOH A 42 542 59 HOH HOH . C 3 HOH A 43 543 6 HOH HOH . C 3 HOH A 44 544 25 HOH HOH . C 3 HOH A 45 545 26 HOH HOH . C 3 HOH A 46 546 122 HOH HOH . C 3 HOH A 47 547 14 HOH HOH . C 3 HOH A 48 548 34 HOH HOH . C 3 HOH A 49 549 30 HOH HOH . C 3 HOH A 50 550 57 HOH HOH . C 3 HOH A 51 551 103 HOH HOH . C 3 HOH A 52 552 97 HOH HOH . C 3 HOH A 53 553 22 HOH HOH . C 3 HOH A 54 554 16 HOH HOH . C 3 HOH A 55 555 55 HOH HOH . C 3 HOH A 56 556 96 HOH HOH . C 3 HOH A 57 557 73 HOH HOH . C 3 HOH A 58 558 72 HOH HOH . C 3 HOH A 59 559 20 HOH HOH . C 3 HOH A 60 560 13 HOH HOH . C 3 HOH A 61 561 2 HOH HOH . C 3 HOH A 62 562 9 HOH HOH . C 3 HOH A 63 563 71 HOH HOH . C 3 HOH A 64 564 39 HOH HOH . C 3 HOH A 65 565 60 HOH HOH . C 3 HOH A 66 566 5 HOH HOH . C 3 HOH A 67 567 23 HOH HOH . C 3 HOH A 68 568 119 HOH HOH . C 3 HOH A 69 569 10 HOH HOH . C 3 HOH A 70 570 42 HOH HOH . C 3 HOH A 71 571 37 HOH HOH . C 3 HOH A 72 572 36 HOH HOH . C 3 HOH A 73 573 68 HOH HOH . C 3 HOH A 74 574 65 HOH HOH . C 3 HOH A 75 575 4 HOH HOH . C 3 HOH A 76 576 54 HOH HOH . C 3 HOH A 77 577 35 HOH HOH . C 3 HOH A 78 578 70 HOH HOH . C 3 HOH A 79 579 101 HOH HOH . C 3 HOH A 80 580 105 HOH HOH . C 3 HOH A 81 581 21 HOH HOH . C 3 HOH A 82 582 126 HOH HOH . C 3 HOH A 83 583 85 HOH HOH . C 3 HOH A 84 584 124 HOH HOH . C 3 HOH A 85 585 93 HOH HOH . C 3 HOH A 86 586 94 HOH HOH . C 3 HOH A 87 587 125 HOH HOH . C 3 HOH A 88 588 58 HOH HOH . C 3 HOH A 89 589 89 HOH HOH . C 3 HOH A 90 590 114 HOH HOH . C 3 HOH A 91 591 64 HOH HOH . C 3 HOH A 92 592 53 HOH HOH . C 3 HOH A 93 593 45 HOH HOH . C 3 HOH A 94 594 63 HOH HOH . C 3 HOH A 95 595 121 HOH HOH . C 3 HOH A 96 596 17 HOH HOH . C 3 HOH A 97 597 48 HOH HOH . C 3 HOH A 98 598 116 HOH HOH . C 3 HOH A 99 599 117 HOH HOH . C 3 HOH A 100 600 109 HOH HOH . C 3 HOH A 101 601 50 HOH HOH . C 3 HOH A 102 602 127 HOH HOH . C 3 HOH A 103 603 99 HOH HOH . C 3 HOH A 104 604 113 HOH HOH . C 3 HOH A 105 605 84 HOH HOH . C 3 HOH A 106 606 80 HOH HOH . C 3 HOH A 107 607 120 HOH HOH . C 3 HOH A 108 608 56 HOH HOH . C 3 HOH A 109 609 92 HOH HOH . C 3 HOH A 110 610 52 HOH HOH . C 3 HOH A 111 611 74 HOH HOH . C 3 HOH A 112 612 106 HOH HOH . C 3 HOH A 113 613 66 HOH HOH . C 3 HOH A 114 614 86 HOH HOH . C 3 HOH A 115 615 75 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P CMP . . . B 2 1.609 -1.486 2.907 1 24.81 ? P CMP 401 A 1 HETATM 2 O O1P CMP . . . B 2 2.649 -0.747 2.095 1 25.95 ? O1P CMP 401 A 1 HETATM 3 O O2P CMP . . . B 2 1.222 -0.937 4.266 1 24.62 ? O2P CMP 401 A 1 HETATM 4 O O5' CMP . . . B 2 2.029 -3.025 3.066 1 26.3 ? O5' CMP 401 A 1 HETATM 5 C C5' CMP . . . B 2 1.04 -4.026 3.312 1 23.61 ? C5' CMP 401 A 1 HETATM 6 C C4' CMP . . . B 2 -0.109 -3.794 2.395 1 25.62 ? C4' CMP 401 A 1 HETATM 7 O O4' CMP . . . B 2 -1.246 -4.608 2.706 1 23 ? O4' CMP 401 A 1 HETATM 8 C C3' CMP . . . B 2 -0.685 -2.421 2.474 1 21.57 ? C3' CMP 401 A 1 HETATM 9 O O3' CMP . . . B 2 0.231 -1.445 2.016 1 26.56 ? O3' CMP 401 A 1 HETATM 10 C C2' CMP . . . B 2 -1.97 -2.584 1.661 1 19.86 ? C2' CMP 401 A 1 HETATM 11 O O2' CMP . . . B 2 -1.695 -2.544 0.268 1 23.13 ? O2' CMP 401 A 1 HETATM 12 C C1' CMP . . . B 2 -2.354 -4.037 2.034 1 19.13 ? C1' CMP 401 A 1 HETATM 13 N N9 CMP . . . B 2 -3.534 -4.133 2.906 1 21.76 ? N9 CMP 401 A 1 HETATM 14 C C8 CMP . . . B 2 -4.6 -4.917 2.631 1 25.17 ? C8 CMP 401 A 1 HETATM 15 N N7 CMP . . . B 2 -5.515 -4.857 3.62 1 24.23 ? N7 CMP 401 A 1 HETATM 16 C C5 CMP . . . B 2 -5.025 -4.041 4.573 1 26.39 ? C5 CMP 401 A 1 HETATM 17 C C6 CMP . . . B 2 -5.503 -3.561 5.886 1 27.37 ? C6 CMP 401 A 1 HETATM 18 N N6 CMP . . . B 2 -6.709 -3.972 6.364 1 24.28 ? N6 CMP 401 A 1 HETATM 19 N N1 CMP . . . B 2 -4.699 -2.713 6.567 1 31.12 ? N1 CMP 401 A 1 HETATM 20 C C2 CMP . . . B 2 -3.498 -2.328 6.08 1 34.23 ? C2 CMP 401 A 1 HETATM 21 N N3 CMP . . . B 2 -3.011 -2.724 4.884 1 28.58 ? N3 CMP 401 A 1 HETATM 22 C C4 CMP . . . B 2 -3.711 -3.573 4.104 1 27.03 ? C4 CMP 401 A 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 22 #