data_5KJY # _model_server_result.job_id QgIMcXlx198-7hu6D1KSDA _model_server_result.datetime_utc '2024-11-22 04:45:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kjy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5KJY # _exptl.entry_id 5KJY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 329.206 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5KJY _cell.length_a 98.7 _cell.length_b 98.7 _cell.length_c 36.17 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KJY _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H12 N5 O6 P' _chem_comp.formula_weight 329.206 _chem_comp.id CMP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'CYCLIC AMP;CAMP' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P CMP doub 70 n n P O2P CMP sing 71 n n P O5' CMP sing 72 n n P O3' CMP sing 73 n n O2P HOP2 CMP sing 74 n n O5' C5' CMP sing 75 n n C5' C4' CMP sing 76 n n C5' "H5'1" CMP sing 77 n n C5' "H5'2" CMP sing 78 n n C4' O4' CMP sing 79 n n C4' C3' CMP sing 80 n n C4' H4' CMP sing 81 n n O4' C1' CMP sing 82 n n C3' O3' CMP sing 83 n n C3' C2' CMP sing 84 n n C3' H3' CMP sing 85 n n C2' O2' CMP sing 86 n n C2' C1' CMP sing 87 n n C2' H2' CMP sing 88 n n O2' HO2' CMP sing 89 n n C1' N9 CMP sing 90 n n C1' H1' CMP sing 91 n n N9 C8 CMP sing 92 n y N9 C4 CMP sing 93 n y C8 N7 CMP doub 94 n y C8 H8 CMP sing 95 n n N7 C5 CMP sing 96 n y C5 C6 CMP sing 97 n y C5 C4 CMP doub 98 n y C6 N6 CMP sing 99 n n C6 N1 CMP doub 100 n y N6 HN61 CMP sing 101 n n N6 HN62 CMP sing 102 n n N1 C2 CMP sing 103 n y C2 N3 CMP doub 104 n y C2 H2 CMP sing 105 n n N3 C4 CMP sing 106 n y # _atom_sites.entry_id 5KJY _atom_sites.fract_transf_matrix[1][1] 0.010132 _atom_sites.fract_transf_matrix[1][2] 0.00585 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011699 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.027647 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CMP A 1 401 1 CMP CMP . C 3 HOH A 1 501 20 HOH HOH . C 3 HOH A 2 502 90 HOH HOH . C 3 HOH A 3 503 21 HOH HOH . C 3 HOH A 4 504 36 HOH HOH . C 3 HOH A 5 505 45 HOH HOH . C 3 HOH A 6 506 4 HOH HOH . C 3 HOH A 7 507 9 HOH HOH . C 3 HOH A 8 508 1 HOH HOH . C 3 HOH A 9 509 6 HOH HOH . C 3 HOH A 10 510 26 HOH HOH . C 3 HOH A 11 511 17 HOH HOH . C 3 HOH A 12 512 50 HOH HOH . C 3 HOH A 13 513 11 HOH HOH . C 3 HOH A 14 514 38 HOH HOH . C 3 HOH A 15 515 55 HOH HOH . C 3 HOH A 16 516 58 HOH HOH . C 3 HOH A 17 517 39 HOH HOH . C 3 HOH A 18 518 14 HOH HOH . C 3 HOH A 19 519 10 HOH HOH . C 3 HOH A 20 520 5 HOH HOH . C 3 HOH A 21 521 78 HOH HOH . C 3 HOH A 22 522 25 HOH HOH . C 3 HOH A 23 523 41 HOH HOH . C 3 HOH A 24 524 61 HOH HOH . C 3 HOH A 25 525 2 HOH HOH . C 3 HOH A 26 526 16 HOH HOH . C 3 HOH A 27 527 75 HOH HOH . C 3 HOH A 28 528 28 HOH HOH . C 3 HOH A 29 529 53 HOH HOH . C 3 HOH A 30 530 22 HOH HOH . C 3 HOH A 31 531 46 HOH HOH . C 3 HOH A 32 532 18 HOH HOH . C 3 HOH A 33 533 15 HOH HOH . C 3 HOH A 34 534 74 HOH HOH . C 3 HOH A 35 535 52 HOH HOH . C 3 HOH A 36 536 59 HOH HOH . C 3 HOH A 37 537 24 HOH HOH . C 3 HOH A 38 538 32 HOH HOH . C 3 HOH A 39 539 30 HOH HOH . C 3 HOH A 40 540 67 HOH HOH . C 3 HOH A 41 541 94 HOH HOH . C 3 HOH A 42 542 83 HOH HOH . C 3 HOH A 43 543 72 HOH HOH . C 3 HOH A 44 544 13 HOH HOH . C 3 HOH A 45 545 76 HOH HOH . C 3 HOH A 46 546 29 HOH HOH . C 3 HOH A 47 547 12 HOH HOH . C 3 HOH A 48 548 65 HOH HOH . C 3 HOH A 49 549 85 HOH HOH . C 3 HOH A 50 550 37 HOH HOH . C 3 HOH A 51 551 40 HOH HOH . C 3 HOH A 52 552 3 HOH HOH . C 3 HOH A 53 553 79 HOH HOH . C 3 HOH A 54 554 7 HOH HOH . C 3 HOH A 55 555 73 HOH HOH . C 3 HOH A 56 556 54 HOH HOH . C 3 HOH A 57 557 8 HOH HOH . C 3 HOH A 58 558 86 HOH HOH . C 3 HOH A 59 559 60 HOH HOH . C 3 HOH A 60 560 42 HOH HOH . C 3 HOH A 61 561 31 HOH HOH . C 3 HOH A 62 562 44 HOH HOH . C 3 HOH A 63 563 77 HOH HOH . C 3 HOH A 64 564 89 HOH HOH . C 3 HOH A 65 565 91 HOH HOH . C 3 HOH A 66 566 71 HOH HOH . C 3 HOH A 67 567 95 HOH HOH . C 3 HOH A 68 568 68 HOH HOH . C 3 HOH A 69 569 63 HOH HOH . C 3 HOH A 70 570 35 HOH HOH . C 3 HOH A 71 571 93 HOH HOH . C 3 HOH A 72 572 33 HOH HOH . C 3 HOH A 73 573 49 HOH HOH . C 3 HOH A 74 574 66 HOH HOH . C 3 HOH A 75 575 47 HOH HOH . C 3 HOH A 76 576 92 HOH HOH . C 3 HOH A 77 577 62 HOH HOH . C 3 HOH A 78 578 87 HOH HOH . C 3 HOH A 79 579 64 HOH HOH . C 3 HOH A 80 580 84 HOH HOH . C 3 HOH A 81 581 27 HOH HOH . C 3 HOH A 82 582 81 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P CMP . . . B 2 37.503 -2.838 7.026 1 22.1 ? P CMP 401 A 1 HETATM 2 O O1P CMP . . . B 2 37.381 -3.293 5.596 1 24.87 ? O1P CMP 401 A 1 HETATM 3 O O2P CMP . . . B 2 36.412 -1.955 7.603 1 24.85 ? O2P CMP 401 A 1 HETATM 4 O O5' CMP . . . B 2 38.94 -2.16 7.273 1 23.01 ? O5' CMP 401 A 1 HETATM 5 C C5' CMP . . . B 2 39.5 -2.081 8.591 1 23.89 ? C5' CMP 401 A 1 HETATM 6 C C4' CMP . . . B 2 39.305 -3.393 9.266 1 23.91 ? C4' CMP 401 A 1 HETATM 7 O O4' CMP . . . B 2 39.674 -3.384 10.651 1 28.37 ? O4' CMP 401 A 1 HETATM 8 C C3' CMP . . . B 2 37.884 -3.855 9.313 1 25.55 ? C3' CMP 401 A 1 HETATM 9 O O3' CMP . . . B 2 37.398 -4.147 8.016 1 25.02 ? O3' CMP 401 A 1 HETATM 10 C C2' CMP . . . B 2 37.986 -5.044 10.265 1 22 ? C2' CMP 401 A 1 HETATM 11 O O2' CMP . . . B 2 38.491 -6.173 9.582 1 19.65 ? O2' CMP 401 A 1 HETATM 12 C C1' CMP . . . B 2 39.084 -4.54 11.238 1 30.45 ? C1' CMP 401 A 1 HETATM 13 N N9 CMP . . . B 2 38.56 -4.207 12.574 1 23.04 ? N9 CMP 401 A 1 HETATM 14 C C8 CMP . . . B 2 39.028 -4.739 13.724 1 26.24 ? C8 CMP 401 A 1 HETATM 15 N N7 CMP . . . B 2 38.386 -4.244 14.815 1 25.38 ? N7 CMP 401 A 1 HETATM 16 C C5 CMP . . . B 2 37.478 -3.356 14.348 1 29.02 ? C5 CMP 401 A 1 HETATM 17 C C6 CMP . . . B 2 36.453 -2.472 14.953 1 31.06 ? C6 CMP 401 A 1 HETATM 18 N N6 CMP . . . B 2 36.268 -2.436 16.294 1 32.82 ? N6 CMP 401 A 1 HETATM 19 N N1 CMP . . . B 2 35.722 -1.701 14.12 1 27.81 ? N1 CMP 401 A 1 HETATM 20 C C2 CMP . . . B 2 35.895 -1.73 12.784 1 30.38 ? C2 CMP 401 A 1 HETATM 21 N N3 CMP . . . B 2 36.803 -2.51 12.162 1 29 ? N3 CMP 401 A 1 HETATM 22 C C4 CMP . . . B 2 37.601 -3.333 12.877 1 23.8 ? C4 CMP 401 A 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 22 #