data_5KJZ
#
_model_server_result.job_id            DOpWpEEdorI1cjMBRWvefQ 
_model_server_result.datetime_utc      '2024-11-14 03:07:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5kjz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":402}' 
#
_entry.id    5KJZ 
#
_exptl.entry_id    5KJZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5KJZ 
_cell.length_a            29.461 
_cell.length_b            67.78 
_cell.length_c            77.96 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5KJZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            B 
_struct_conn.ptnr1_label_atom_id            N2 
_struct_conn.ptnr1_label_comp_id            PCG 
_struct_conn.ptnr1_label_seq_id             . 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             PCG 
_struct_conn.ptnr1_auth_seq_id              401 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            C 
_struct_conn.ptnr2_label_atom_id            O1 
_struct_conn.ptnr2_label_comp_id            GOL 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             GOL 
_struct_conn.ptnr2_auth_seq_id              402 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.309 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     5KJZ 
_atom_sites.fract_transf_matrix[1][1]    0.033943 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014754 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012827 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PCG A 1 401 1 PCG PCG . 
C 3 GOL A 1 402 1 GOL GOL . 
D 3 GOL A 1 403 2 GOL GOL . 
E 4 HOH A 1 501 157 HOH HOH . 
E 4 HOH A 2 502 145 HOH HOH . 
E 4 HOH A 3 503 68 HOH HOH . 
E 4 HOH A 4 504 186 HOH HOH . 
E 4 HOH A 5 505 178 HOH HOH . 
E 4 HOH A 6 506 164 HOH HOH . 
E 4 HOH A 7 507 185 HOH HOH . 
E 4 HOH A 8 508 138 HOH HOH . 
E 4 HOH A 9 509 200 HOH HOH . 
E 4 HOH A 10 510 25 HOH HOH . 
E 4 HOH A 11 511 127 HOH HOH . 
E 4 HOH A 12 512 160 HOH HOH . 
E 4 HOH A 13 513 187 HOH HOH . 
E 4 HOH A 14 514 153 HOH HOH . 
E 4 HOH A 15 515 21 HOH HOH . 
E 4 HOH A 16 516 113 HOH HOH . 
E 4 HOH A 17 517 268 HOH HOH . 
E 4 HOH A 18 518 122 HOH HOH . 
E 4 HOH A 19 519 74 HOH HOH . 
E 4 HOH A 20 520 266 HOH HOH . 
E 4 HOH A 21 521 85 HOH HOH . 
E 4 HOH A 22 522 15 HOH HOH . 
E 4 HOH A 23 523 57 HOH HOH . 
E 4 HOH A 24 524 39 HOH HOH . 
E 4 HOH A 25 525 175 HOH HOH . 
E 4 HOH A 26 526 283 HOH HOH . 
E 4 HOH A 27 527 176 HOH HOH . 
E 4 HOH A 28 528 212 HOH HOH . 
E 4 HOH A 29 529 76 HOH HOH . 
E 4 HOH A 30 530 3 HOH HOH . 
E 4 HOH A 31 531 60 HOH HOH . 
E 4 HOH A 32 532 78 HOH HOH . 
E 4 HOH A 33 533 89 HOH HOH . 
E 4 HOH A 34 534 30 HOH HOH . 
E 4 HOH A 35 535 13 HOH HOH . 
E 4 HOH A 36 536 115 HOH HOH . 
E 4 HOH A 37 537 44 HOH HOH . 
E 4 HOH A 38 538 45 HOH HOH . 
E 4 HOH A 39 539 18 HOH HOH . 
E 4 HOH A 40 540 10 HOH HOH . 
E 4 HOH A 41 541 11 HOH HOH . 
E 4 HOH A 42 542 65 HOH HOH . 
E 4 HOH A 43 543 9 HOH HOH . 
E 4 HOH A 44 544 257 HOH HOH . 
E 4 HOH A 45 545 150 HOH HOH . 
E 4 HOH A 46 546 52 HOH HOH . 
E 4 HOH A 47 547 70 HOH HOH . 
E 4 HOH A 48 548 63 HOH HOH . 
E 4 HOH A 49 549 80 HOH HOH . 
E 4 HOH A 50 550 22 HOH HOH . 
E 4 HOH A 51 551 34 HOH HOH . 
E 4 HOH A 52 552 136 HOH HOH . 
E 4 HOH A 53 553 24 HOH HOH . 
E 4 HOH A 54 554 83 HOH HOH . 
E 4 HOH A 55 555 20 HOH HOH . 
E 4 HOH A 56 556 95 HOH HOH . 
E 4 HOH A 57 557 19 HOH HOH . 
E 4 HOH A 58 558 241 HOH HOH . 
E 4 HOH A 59 559 75 HOH HOH . 
E 4 HOH A 60 560 1 HOH HOH . 
E 4 HOH A 61 561 79 HOH HOH . 
E 4 HOH A 62 562 143 HOH HOH . 
E 4 HOH A 63 563 33 HOH HOH . 
E 4 HOH A 64 564 69 HOH HOH . 
E 4 HOH A 65 565 53 HOH HOH . 
E 4 HOH A 66 566 260 HOH HOH . 
E 4 HOH A 67 567 8 HOH HOH . 
E 4 HOH A 68 568 130 HOH HOH . 
E 4 HOH A 69 569 55 HOH HOH . 
E 4 HOH A 70 570 12 HOH HOH . 
E 4 HOH A 71 571 35 HOH HOH . 
E 4 HOH A 72 572 96 HOH HOH . 
E 4 HOH A 73 573 31 HOH HOH . 
E 4 HOH A 74 574 42 HOH HOH . 
E 4 HOH A 75 575 36 HOH HOH . 
E 4 HOH A 76 576 86 HOH HOH . 
E 4 HOH A 77 577 124 HOH HOH . 
E 4 HOH A 78 578 29 HOH HOH . 
E 4 HOH A 79 579 72 HOH HOH . 
E 4 HOH A 80 580 14 HOH HOH . 
E 4 HOH A 81 581 48 HOH HOH . 
E 4 HOH A 82 582 7 HOH HOH . 
E 4 HOH A 83 583 248 HOH HOH . 
E 4 HOH A 84 584 144 HOH HOH . 
E 4 HOH A 85 585 28 HOH HOH . 
E 4 HOH A 86 586 238 HOH HOH . 
E 4 HOH A 87 587 2 HOH HOH . 
E 4 HOH A 88 588 198 HOH HOH . 
E 4 HOH A 89 589 58 HOH HOH . 
E 4 HOH A 90 590 194 HOH HOH . 
E 4 HOH A 91 591 102 HOH HOH . 
E 4 HOH A 92 592 5 HOH HOH . 
E 4 HOH A 93 593 77 HOH HOH . 
E 4 HOH A 94 594 132 HOH HOH . 
E 4 HOH A 95 595 32 HOH HOH . 
E 4 HOH A 96 596 245 HOH HOH . 
E 4 HOH A 97 597 17 HOH HOH . 
E 4 HOH A 98 598 6 HOH HOH . 
E 4 HOH A 99 599 109 HOH HOH . 
E 4 HOH A 100 600 4 HOH HOH . 
E 4 HOH A 101 601 156 HOH HOH . 
E 4 HOH A 102 602 88 HOH HOH . 
E 4 HOH A 103 603 174 HOH HOH . 
E 4 HOH A 104 604 221 HOH HOH . 
E 4 HOH A 105 605 152 HOH HOH . 
E 4 HOH A 106 606 171 HOH HOH . 
E 4 HOH A 107 607 26 HOH HOH . 
E 4 HOH A 108 608 50 HOH HOH . 
E 4 HOH A 109 609 206 HOH HOH . 
E 4 HOH A 110 610 269 HOH HOH . 
E 4 HOH A 111 611 27 HOH HOH . 
E 4 HOH A 112 612 87 HOH HOH . 
E 4 HOH A 113 613 64 HOH HOH . 
E 4 HOH A 114 614 59 HOH HOH . 
E 4 HOH A 115 615 90 HOH HOH . 
E 4 HOH A 116 616 41 HOH HOH . 
E 4 HOH A 117 617 123 HOH HOH . 
E 4 HOH A 118 618 93 HOH HOH . 
E 4 HOH A 119 619 16 HOH HOH . 
E 4 HOH A 120 620 120 HOH HOH . 
E 4 HOH A 121 621 51 HOH HOH . 
E 4 HOH A 122 622 47 HOH HOH . 
E 4 HOH A 123 623 146 HOH HOH . 
E 4 HOH A 124 624 37 HOH HOH . 
E 4 HOH A 125 625 54 HOH HOH . 
E 4 HOH A 126 626 151 HOH HOH . 
E 4 HOH A 127 627 38 HOH HOH . 
E 4 HOH A 128 628 128 HOH HOH . 
E 4 HOH A 129 629 203 HOH HOH . 
E 4 HOH A 130 630 168 HOH HOH . 
E 4 HOH A 131 631 282 HOH HOH . 
E 4 HOH A 132 632 166 HOH HOH . 
E 4 HOH A 133 633 207 HOH HOH . 
E 4 HOH A 134 634 112 HOH HOH . 
E 4 HOH A 135 635 46 HOH HOH . 
E 4 HOH A 136 636 62 HOH HOH . 
E 4 HOH A 137 637 111 HOH HOH . 
E 4 HOH A 138 638 107 HOH HOH . 
E 4 HOH A 139 639 56 HOH HOH . 
E 4 HOH A 140 640 97 HOH HOH . 
E 4 HOH A 141 641 103 HOH HOH . 
E 4 HOH A 142 642 197 HOH HOH . 
E 4 HOH A 143 643 119 HOH HOH . 
E 4 HOH A 144 644 61 HOH HOH . 
E 4 HOH A 145 645 66 HOH HOH . 
E 4 HOH A 146 646 155 HOH HOH . 
E 4 HOH A 147 647 236 HOH HOH . 
E 4 HOH A 148 648 188 HOH HOH . 
E 4 HOH A 149 649 177 HOH HOH . 
E 4 HOH A 150 650 81 HOH HOH . 
E 4 HOH A 151 651 118 HOH HOH . 
E 4 HOH A 152 652 110 HOH HOH . 
E 4 HOH A 153 653 106 HOH HOH . 
E 4 HOH A 154 654 228 HOH HOH . 
E 4 HOH A 155 655 170 HOH HOH . 
E 4 HOH A 156 656 179 HOH HOH . 
E 4 HOH A 157 657 129 HOH HOH . 
E 4 HOH A 158 658 224 HOH HOH . 
E 4 HOH A 159 659 158 HOH HOH . 
E 4 HOH A 160 660 239 HOH HOH . 
E 4 HOH A 161 661 218 HOH HOH . 
E 4 HOH A 162 662 117 HOH HOH . 
E 4 HOH A 163 663 94 HOH HOH . 
E 4 HOH A 164 664 244 HOH HOH . 
E 4 HOH A 165 665 202 HOH HOH . 
E 4 HOH A 166 666 154 HOH HOH . 
E 4 HOH A 167 667 195 HOH HOH . 
E 4 HOH A 168 668 167 HOH HOH . 
E 4 HOH A 169 669 191 HOH HOH . 
E 4 HOH A 170 670 92 HOH HOH . 
E 4 HOH A 171 671 105 HOH HOH . 
E 4 HOH A 172 672 91 HOH HOH . 
E 4 HOH A 173 673 261 HOH HOH . 
E 4 HOH A 174 674 279 HOH HOH . 
E 4 HOH A 175 675 247 HOH HOH . 
E 4 HOH A 176 676 131 HOH HOH . 
E 4 HOH A 177 677 84 HOH HOH . 
E 4 HOH A 178 678 208 HOH HOH . 
E 4 HOH A 179 679 121 HOH HOH . 
E 4 HOH A 180 680 172 HOH HOH . 
E 4 HOH A 181 681 161 HOH HOH . 
E 4 HOH A 182 682 201 HOH HOH . 
E 4 HOH A 183 683 149 HOH HOH . 
E 4 HOH A 184 684 182 HOH HOH . 
E 4 HOH A 185 685 255 HOH HOH . 
E 4 HOH A 186 686 262 HOH HOH . 
E 4 HOH A 187 687 180 HOH HOH . 
E 4 HOH A 188 688 249 HOH HOH . 
E 4 HOH A 189 689 235 HOH HOH . 
E 4 HOH A 190 690 43 HOH HOH . 
E 4 HOH A 191 691 99 HOH HOH . 
E 4 HOH A 192 692 133 HOH HOH . 
E 4 HOH A 193 693 216 HOH HOH . 
E 4 HOH A 194 694 101 HOH HOH . 
E 4 HOH A 195 695 104 HOH HOH . 
E 4 HOH A 196 696 23 HOH HOH . 
E 4 HOH A 197 697 265 HOH HOH . 
E 4 HOH A 198 698 210 HOH HOH . 
E 4 HOH A 199 699 140 HOH HOH . 
E 4 HOH A 200 700 141 HOH HOH . 
E 4 HOH A 201 701 148 HOH HOH . 
E 4 HOH A 202 702 183 HOH HOH . 
E 4 HOH A 203 703 135 HOH HOH . 
E 4 HOH A 204 704 211 HOH HOH . 
E 4 HOH A 205 705 209 HOH HOH . 
E 4 HOH A 206 706 274 HOH HOH . 
E 4 HOH A 207 707 173 HOH HOH . 
E 4 HOH A 208 708 73 HOH HOH . 
E 4 HOH A 209 709 264 HOH HOH . 
E 4 HOH A 210 710 159 HOH HOH . 
E 4 HOH A 211 711 126 HOH HOH . 
E 4 HOH A 212 712 222 HOH HOH . 
E 4 HOH A 213 713 270 HOH HOH . 
E 4 HOH A 214 714 284 HOH HOH . 
E 4 HOH A 215 715 139 HOH HOH . 
E 4 HOH A 216 716 162 HOH HOH . 
E 4 HOH A 217 717 49 HOH HOH . 
E 4 HOH A 218 718 214 HOH HOH . 
E 4 HOH A 219 719 226 HOH HOH . 
E 4 HOH A 220 720 169 HOH HOH . 
E 4 HOH A 221 721 147 HOH HOH . 
E 4 HOH A 222 722 108 HOH HOH . 
E 4 HOH A 223 723 225 HOH HOH . 
E 4 HOH A 224 724 40 HOH HOH . 
E 4 HOH A 225 725 234 HOH HOH . 
E 4 HOH A 226 726 100 HOH HOH . 
E 4 HOH A 227 727 134 HOH HOH . 
E 4 HOH A 228 728 165 HOH HOH . 
E 4 HOH A 229 729 116 HOH HOH . 
E 4 HOH A 230 730 163 HOH HOH . 
E 4 HOH A 231 731 193 HOH HOH . 
E 4 HOH A 232 732 82 HOH HOH . 
E 4 HOH A 233 733 246 HOH HOH . 
E 4 HOH A 234 734 254 HOH HOH . 
E 4 HOH A 235 735 189 HOH HOH . 
E 4 HOH A 236 736 98 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 3 -1.171 12.62 1.739 1 19.33 ? C1 GOL 402 A 1 
HETATM 2 O O1 GOL . . . C 3 -0.961 11.191 1.91 1 164.63 ? O1 GOL 402 A 1 
HETATM 3 C C2 GOL . . . C 3 -1.662 13.503 2.948 1 36.67 ? C2 GOL 402 A 1 
HETATM 4 O O2 GOL . . . C 3 -1.345 14.905 2.91 1 25.03 ? O2 GOL 402 A 1 
HETATM 5 C C3 GOL . . . C 3 -1.337 13.036 4.367 1 35.2 ? C3 GOL 402 A 1 
HETATM 6 O O3 GOL . . . C 3 -1.59 14.099 5.268 1 38.85 ? O3 GOL 402 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           293 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#