data_5KK8
#
_model_server_result.job_id            misGmV5kY6UMydAybEBFXQ 
_model_server_result.datetime_utc      '2024-11-01 07:23:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5kk8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":201}' 
#
_entry.id    5KK8 
#
_exptl.entry_id    5KK8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5KK8 
_cell.length_a            71.45 
_cell.length_b            71.45 
_cell.length_c            219.34 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5KK8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        182 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 63 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 software_defined_assembly 1 
PISA monomeric 1 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1,2 
B,D,F 2 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 11_755 -x+y+2,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 142.9 0 109.67 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     5KK8 
_atom_sites.fract_transf_matrix[1][1]    0.013996 
_atom_sites.fract_transf_matrix[1][2]    0.00808 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016161 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004559 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ADP A 1 201 1 ADP ADP . 
D 2 ADP B 1 201 2 ADP ADP . 
E 3 HOH A 1 301 124 HOH HOH . 
E 3 HOH A 2 302 20 HOH HOH . 
E 3 HOH A 3 303 19 HOH HOH . 
E 3 HOH A 4 304 86 HOH HOH . 
E 3 HOH A 5 305 42 HOH HOH . 
E 3 HOH A 6 306 78 HOH HOH . 
E 3 HOH A 7 307 104 HOH HOH . 
E 3 HOH A 8 308 29 HOH HOH . 
E 3 HOH A 9 309 9 HOH HOH . 
E 3 HOH A 10 310 3 HOH HOH . 
E 3 HOH A 11 311 2 HOH HOH . 
E 3 HOH A 12 312 119 HOH HOH . 
E 3 HOH A 13 313 121 HOH HOH . 
E 3 HOH A 14 314 14 HOH HOH . 
E 3 HOH A 15 315 53 HOH HOH . 
E 3 HOH A 16 316 81 HOH HOH . 
E 3 HOH A 17 317 21 HOH HOH . 
E 3 HOH A 18 318 12 HOH HOH . 
E 3 HOH A 19 319 66 HOH HOH . 
E 3 HOH A 20 320 39 HOH HOH . 
E 3 HOH A 21 321 1 HOH HOH . 
E 3 HOH A 22 322 54 HOH HOH . 
E 3 HOH A 23 323 47 HOH HOH . 
E 3 HOH A 24 324 8 HOH HOH . 
E 3 HOH A 25 325 4 HOH HOH . 
E 3 HOH A 26 326 147 HOH HOH . 
E 3 HOH A 27 327 57 HOH HOH . 
E 3 HOH A 28 328 156 HOH HOH . 
E 3 HOH A 29 329 32 HOH HOH . 
E 3 HOH A 30 330 90 HOH HOH . 
E 3 HOH A 31 331 26 HOH HOH . 
E 3 HOH A 32 332 27 HOH HOH . 
E 3 HOH A 33 333 175 HOH HOH . 
E 3 HOH A 34 334 40 HOH HOH . 
E 3 HOH A 35 335 146 HOH HOH . 
E 3 HOH A 36 336 134 HOH HOH . 
E 3 HOH A 37 337 5 HOH HOH . 
E 3 HOH A 38 338 169 HOH HOH . 
E 3 HOH A 39 339 65 HOH HOH . 
E 3 HOH A 40 340 132 HOH HOH . 
E 3 HOH A 41 341 125 HOH HOH . 
E 3 HOH A 42 342 52 HOH HOH . 
E 3 HOH A 43 343 84 HOH HOH . 
E 3 HOH A 44 344 17 HOH HOH . 
E 3 HOH A 45 345 184 HOH HOH . 
E 3 HOH A 46 346 150 HOH HOH . 
E 3 HOH A 47 347 44 HOH HOH . 
E 3 HOH A 48 348 13 HOH HOH . 
E 3 HOH A 49 349 100 HOH HOH . 
E 3 HOH A 50 350 85 HOH HOH . 
E 3 HOH A 51 351 82 HOH HOH . 
E 3 HOH A 52 352 61 HOH HOH . 
E 3 HOH A 53 353 60 HOH HOH . 
E 3 HOH A 54 354 11 HOH HOH . 
E 3 HOH A 55 355 45 HOH HOH . 
E 3 HOH A 56 356 76 HOH HOH . 
E 3 HOH A 57 357 116 HOH HOH . 
E 3 HOH A 58 358 70 HOH HOH . 
E 3 HOH A 59 359 117 HOH HOH . 
E 3 HOH A 60 360 24 HOH HOH . 
E 3 HOH A 61 361 106 HOH HOH . 
E 3 HOH A 62 362 16 HOH HOH . 
E 3 HOH A 63 363 25 HOH HOH . 
E 3 HOH A 64 364 153 HOH HOH . 
E 3 HOH A 65 365 96 HOH HOH . 
E 3 HOH A 66 366 139 HOH HOH . 
E 3 HOH A 67 367 141 HOH HOH . 
E 3 HOH A 68 368 101 HOH HOH . 
E 3 HOH A 69 369 37 HOH HOH . 
E 3 HOH A 70 370 148 HOH HOH . 
E 3 HOH A 71 371 136 HOH HOH . 
E 3 HOH A 72 372 15 HOH HOH . 
E 3 HOH A 73 373 155 HOH HOH . 
E 3 HOH A 74 374 83 HOH HOH . 
E 3 HOH A 75 375 50 HOH HOH . 
E 3 HOH A 76 376 74 HOH HOH . 
E 3 HOH A 77 377 46 HOH HOH . 
E 3 HOH A 78 378 38 HOH HOH . 
E 3 HOH A 79 379 30 HOH HOH . 
E 3 HOH A 80 380 180 HOH HOH . 
E 3 HOH A 81 381 34 HOH HOH . 
E 3 HOH A 82 382 126 HOH HOH . 
E 3 HOH A 83 383 154 HOH HOH . 
E 3 HOH A 84 384 88 HOH HOH . 
E 3 HOH A 85 385 118 HOH HOH . 
E 3 HOH A 86 386 18 HOH HOH . 
E 3 HOH A 87 387 72 HOH HOH . 
E 3 HOH A 88 388 182 HOH HOH . 
E 3 HOH A 89 389 71 HOH HOH . 
E 3 HOH A 90 390 35 HOH HOH . 
E 3 HOH A 91 391 93 HOH HOH . 
E 3 HOH A 92 392 67 HOH HOH . 
E 3 HOH A 93 393 41 HOH HOH . 
E 3 HOH A 94 394 179 HOH HOH . 
E 3 HOH A 95 395 140 HOH HOH . 
E 3 HOH A 96 396 166 HOH HOH . 
E 3 HOH A 97 397 99 HOH HOH . 
E 3 HOH A 98 398 149 HOH HOH . 
E 3 HOH A 99 399 89 HOH HOH . 
E 3 HOH A 100 400 36 HOH HOH . 
E 3 HOH A 101 401 97 HOH HOH . 
E 3 HOH A 102 402 68 HOH HOH . 
E 3 HOH A 103 403 162 HOH HOH . 
E 3 HOH A 104 404 120 HOH HOH . 
E 3 HOH A 105 405 63 HOH HOH . 
E 3 HOH A 106 406 105 HOH HOH . 
E 3 HOH A 107 407 151 HOH HOH . 
E 3 HOH A 108 408 95 HOH HOH . 
E 3 HOH A 109 409 128 HOH HOH . 
E 3 HOH A 110 410 157 HOH HOH . 
E 3 HOH A 111 411 94 HOH HOH . 
E 3 HOH A 112 412 115 HOH HOH . 
E 3 HOH A 113 413 160 HOH HOH . 
E 3 HOH A 114 414 133 HOH HOH . 
E 3 HOH A 115 415 170 HOH HOH . 
E 3 HOH A 116 416 112 HOH HOH . 
E 3 HOH A 117 417 108 HOH HOH . 
E 3 HOH A 118 418 178 HOH HOH . 
E 3 HOH A 119 419 143 HOH HOH . 
E 3 HOH A 120 420 165 HOH HOH . 
E 3 HOH A 121 421 103 HOH HOH . 
E 3 HOH A 122 422 144 HOH HOH . 
F 3 HOH B 1 301 168 HOH HOH . 
F 3 HOH B 2 302 102 HOH HOH . 
F 3 HOH B 3 303 31 HOH HOH . 
F 3 HOH B 4 304 129 HOH HOH . 
F 3 HOH B 5 305 7 HOH HOH . 
F 3 HOH B 6 306 33 HOH HOH . 
F 3 HOH B 7 307 49 HOH HOH . 
F 3 HOH B 8 308 10 HOH HOH . 
F 3 HOH B 9 309 131 HOH HOH . 
F 3 HOH B 10 310 28 HOH HOH . 
F 3 HOH B 11 311 23 HOH HOH . 
F 3 HOH B 12 312 122 HOH HOH . 
F 3 HOH B 13 313 111 HOH HOH . 
F 3 HOH B 14 314 6 HOH HOH . 
F 3 HOH B 15 315 64 HOH HOH . 
F 3 HOH B 16 316 22 HOH HOH . 
F 3 HOH B 17 317 77 HOH HOH . 
F 3 HOH B 18 318 69 HOH HOH . 
F 3 HOH B 19 319 48 HOH HOH . 
F 3 HOH B 20 320 107 HOH HOH . 
F 3 HOH B 21 321 75 HOH HOH . 
F 3 HOH B 22 322 55 HOH HOH . 
F 3 HOH B 23 323 135 HOH HOH . 
F 3 HOH B 24 324 58 HOH HOH . 
F 3 HOH B 25 325 142 HOH HOH . 
F 3 HOH B 26 326 176 HOH HOH . 
F 3 HOH B 27 327 110 HOH HOH . 
F 3 HOH B 28 328 177 HOH HOH . 
F 3 HOH B 29 329 173 HOH HOH . 
F 3 HOH B 30 330 73 HOH HOH . 
F 3 HOH B 31 331 152 HOH HOH . 
F 3 HOH B 32 332 79 HOH HOH . 
F 3 HOH B 33 333 51 HOH HOH . 
F 3 HOH B 34 334 59 HOH HOH . 
F 3 HOH B 35 335 161 HOH HOH . 
F 3 HOH B 36 336 172 HOH HOH . 
F 3 HOH B 37 337 164 HOH HOH . 
F 3 HOH B 38 338 123 HOH HOH . 
F 3 HOH B 39 339 62 HOH HOH . 
F 3 HOH B 40 340 174 HOH HOH . 
F 3 HOH B 41 341 181 HOH HOH . 
F 3 HOH B 42 342 109 HOH HOH . 
F 3 HOH B 43 343 137 HOH HOH . 
F 3 HOH B 44 344 91 HOH HOH . 
F 3 HOH B 45 345 56 HOH HOH . 
F 3 HOH B 46 346 98 HOH HOH . 
F 3 HOH B 47 347 80 HOH HOH . 
F 3 HOH B 48 348 113 HOH HOH . 
F 3 HOH B 49 349 130 HOH HOH . 
F 3 HOH B 50 350 158 HOH HOH . 
F 3 HOH B 51 351 43 HOH HOH . 
F 3 HOH B 52 352 159 HOH HOH . 
F 3 HOH B 53 353 92 HOH HOH . 
F 3 HOH B 54 354 127 HOH HOH . 
F 3 HOH B 55 355 183 HOH HOH . 
F 3 HOH B 56 356 171 HOH HOH . 
F 3 HOH B 57 357 167 HOH HOH . 
F 3 HOH B 58 358 114 HOH HOH . 
F 3 HOH B 59 359 145 HOH HOH . 
F 3 HOH B 60 360 87 HOH HOH . 
F 3 HOH B 61 361 138 HOH HOH . 
F 3 HOH B 62 362 163 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . C 2 77.64 106.657 34.949 1 92.97 ? PB ADP 201 A 1 
HETATM 2 O O1B ADP . . . C 2 77.403 108.152 34.866 1 94.33 ? O1B ADP 201 A 1 
HETATM 3 O O2B ADP . . . C 2 78.574 106.277 36.081 1 91.96 ? O2B ADP 201 A 1 
HETATM 4 O O3B ADP . . . C 2 76.391 105.806 34.872 1 94.44 ? O3B ADP 201 A 1 
HETATM 5 P PA ADP . . . C 2 78.971 104.814 33.198 1 94.78 ? PA ADP 201 A 1 
HETATM 6 O O1A ADP . . . C 2 79.988 104.984 32.086 1 87.4 ? O1A ADP 201 A 1 
HETATM 7 O O2A ADP . . . C 2 77.76 103.915 32.997 1 101.27 ? O2A ADP 201 A 1 
HETATM 8 O O3A ADP . . . C 2 78.43 106.302 33.574 1 96.71 ? O3A ADP 201 A 1 
HETATM 9 O O5' ADP . . . C 2 79.7 104.39 34.585 1 81.86 ? O5' ADP 201 A 1 
HETATM 10 C C5' ADP . . . C 2 81.038 103.932 34.576 1 68.68 ? C5' ADP 201 A 1 
HETATM 11 C C4' ADP . . . C 2 81.766 104.385 35.825 1 64.17 ? C4' ADP 201 A 1 
HETATM 12 O O4' ADP . . . C 2 83.138 104.049 35.606 1 67.92 ? O4' ADP 201 A 1 
HETATM 13 C C3' ADP . . . C 2 81.729 105.887 36.097 1 62.25 ? C3' ADP 201 A 1 
HETATM 14 O O3' ADP . . . C 2 80.685 106.291 37.004 1 50.83 ? O3' ADP 201 A 1 
HETATM 15 C C2' ADP . . . C 2 83.139 106.189 36.605 1 69.94 ? C2' ADP 201 A 1 
HETATM 16 O O2' ADP . . . C 2 83.289 106.069 38.026 1 72.12 ? O2' ADP 201 A 1 
HETATM 17 C C1' ADP . . . C 2 84.005 105.139 35.935 1 70.41 ? C1' ADP 201 A 1 
HETATM 18 N N9 ADP . . . C 2 84.61 105.714 34.7 1 71.37 ? N9 ADP 201 A 1 
HETATM 19 C C8 ADP . . . C 2 83.933 106.015 33.561 1 69.13 ? C8 ADP 201 A 1 
HETATM 20 N N7 ADP . . . C 2 84.772 106.533 32.628 1 68.05 ? N7 ADP 201 A 1 
HETATM 21 C C5 ADP . . . C 2 86.01 106.572 33.166 1 67.45 ? C5 ADP 201 A 1 
HETATM 22 C C6 ADP . . . C 2 87.347 107.008 32.711 1 66.65 ? C6 ADP 201 A 1 
HETATM 23 N N6 ADP . . . C 2 87.489 107.508 31.459 1 67 ? N6 ADP 201 A 1 
HETATM 24 N N1 ADP . . . C 2 88.385 106.886 33.579 1 66.75 ? N1 ADP 201 A 1 
HETATM 25 C C2 ADP . . . C 2 88.231 106.386 34.826 1 66.1 ? C2 ADP 201 A 1 
HETATM 26 N N3 ADP . . . C 2 87.034 105.967 35.297 1 66.05 ? N3 ADP 201 A 1 
HETATM 27 C C4 ADP . . . C 2 85.906 106.036 34.534 1 68.59 ? C4 ADP 201 A 1 
#
_model_server_stats.io_time_ms              53 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           326 
_model_server_stats.encode_time_ms          20 
_model_server_stats.element_count           27 
#