data_5KKE # _model_server_result.job_id 87Kp3Lzz4YF4b9e7vWHnNQ _model_server_result.datetime_utc '2024-11-22 14:22:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kke # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5KKE # _exptl.entry_id 5KKE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.503 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KKE _cell.length_a 49.74 _cell.length_b 69.326 _cell.length_c 72.482 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KKE _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_557 x,-y,-z+2 1 0 0 0 -1 0 0 0 -1 0 0 144.964 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 19 A CYS 14 1_555 B CAB HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.821 ? metalc ? metalc1 A NE2 HIS 23 A HIS 18 1_555 B FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc2 B FE HEC . A HEC 201 1_555 I O HOH . A HOH 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 220 n n FE NB HEC sing 221 n n FE NC HEC sing 222 n n FE ND HEC sing 223 n n CHA C1A HEC doub 224 n n CHA C4D HEC sing 225 n n CHA HHA HEC sing 226 n n CHB C4A HEC doub 227 n n CHB C1B HEC sing 228 n n CHB HHB HEC sing 229 n n CHC C4B HEC doub 230 n n CHC C1C HEC sing 231 n n CHC HHC HEC sing 232 n n CHD C4C HEC doub 233 n n CHD C1D HEC sing 234 n n CHD HHD HEC sing 235 n n NA C1A HEC sing 236 n y NA C4A HEC sing 237 n y C1A C2A HEC sing 238 n y C2A C3A HEC doub 239 n y C2A CAA HEC sing 240 n n C3A C4A HEC sing 241 n y C3A CMA HEC sing 242 n n CMA HMA1 HEC sing 243 n n CMA HMA2 HEC sing 244 n n CMA HMA3 HEC sing 245 n n CAA CBA HEC sing 246 n n CAA HAA1 HEC sing 247 n n CAA HAA2 HEC sing 248 n n CBA CGA HEC sing 249 n n CBA HBA1 HEC sing 250 n n CBA HBA2 HEC sing 251 n n CGA O1A HEC doub 252 n n CGA O2A HEC sing 253 n n O2A H2A HEC sing 254 n n NB C1B HEC sing 255 n y NB C4B HEC sing 256 n y C1B C2B HEC doub 257 n y C2B C3B HEC sing 258 n y C2B CMB HEC sing 259 n n C3B C4B HEC sing 260 n y C3B CAB HEC doub 261 e n CMB HMB1 HEC sing 262 n n CMB HMB2 HEC sing 263 n n CMB HMB3 HEC sing 264 n n CAB CBB HEC sing 265 n n CAB HAB HEC sing 266 n n CBB HBB1 HEC sing 267 n n CBB HBB2 HEC sing 268 n n CBB HBB3 HEC sing 269 n n NC C1C HEC sing 270 n y NC C4C HEC sing 271 n y C1C C2C HEC doub 272 n y C2C C3C HEC sing 273 n y C2C CMC HEC sing 274 n n C3C C4C HEC sing 275 n y C3C CAC HEC doub 276 e n CMC HMC1 HEC sing 277 n n CMC HMC2 HEC sing 278 n n CMC HMC3 HEC sing 279 n n CAC CBC HEC sing 280 n n CAC HAC HEC sing 281 n n CBC HBC1 HEC sing 282 n n CBC HBC2 HEC sing 283 n n CBC HBC3 HEC sing 284 n n ND C1D HEC sing 285 n y ND C4D HEC sing 286 n y C1D C2D HEC doub 287 n y C2D C3D HEC sing 288 n y C2D CMD HEC sing 289 n n C3D C4D HEC doub 290 n y C3D CAD HEC sing 291 n n CMD HMD1 HEC sing 292 n n CMD HMD2 HEC sing 293 n n CMD HMD3 HEC sing 294 n n CAD CBD HEC sing 295 n n CAD HAD1 HEC sing 296 n n CAD HAD2 HEC sing 297 n n CBD CGD HEC sing 298 n n CBD HBD1 HEC sing 299 n n CBD HBD2 HEC sing 300 n n CGD O1D HEC doub 301 n n CGD O2D HEC sing 302 n n O2D H2D HEC sing 303 n n # _atom_sites.entry_id 5KKE _atom_sites.fract_transf_matrix[1][1] 0.020105 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014425 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013797 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEC A 1 201 201 HEC CHE . C 3 SO4 A 1 202 202 SO4 SO4 . D 3 SO4 A 1 203 203 SO4 SO4 . E 4 CM5 A 1 204 204 CM5 CM5 . F 5 CL A 1 205 205 CL CL . G 6 GOL A 1 206 206 GOL GOL . H 6 GOL A 1 207 207 GOL GOL . I 7 HOH A 1 301 301 HOH HOH . I 7 HOH A 2 302 306 HOH HOH . I 7 HOH A 3 303 302 HOH HOH . I 7 HOH A 4 304 307 HOH HOH . I 7 HOH A 5 305 303 HOH HOH . I 7 HOH A 6 306 309 HOH HOH . I 7 HOH A 7 307 304 HOH HOH . I 7 HOH A 8 308 310 HOH HOH . I 7 HOH A 9 309 305 HOH HOH . I 7 HOH A 10 310 308 HOH HOH . I 7 HOH A 11 311 312 HOH HOH . I 7 HOH A 12 312 313 HOH HOH . I 7 HOH A 13 313 311 HOH HOH . I 7 HOH A 14 314 316 HOH HOH . I 7 HOH A 15 315 315 HOH HOH . I 7 HOH A 16 316 314 HOH HOH . I 7 HOH A 17 317 318 HOH HOH . I 7 HOH A 18 318 317 HOH HOH . I 7 HOH A 19 319 320 HOH HOH . I 7 HOH A 20 320 319 HOH HOH . I 7 HOH A 21 321 321 HOH HOH . I 7 HOH A 22 322 322 HOH HOH . I 7 HOH A 23 323 323 HOH HOH . I 7 HOH A 24 324 327 HOH HOH . I 7 HOH A 25 325 324 HOH HOH . I 7 HOH A 26 326 329 HOH HOH . I 7 HOH A 27 327 326 HOH HOH . I 7 HOH A 28 328 347 HOH HOH . I 7 HOH A 29 329 334 HOH HOH . I 7 HOH A 30 330 330 HOH HOH . I 7 HOH A 31 331 332 HOH HOH . I 7 HOH A 32 332 325 HOH HOH . I 7 HOH A 33 333 335 HOH HOH . I 7 HOH A 34 334 328 HOH HOH . I 7 HOH A 35 335 337 HOH HOH . I 7 HOH A 36 336 331 HOH HOH . I 7 HOH A 37 337 338 HOH HOH . I 7 HOH A 38 338 339 HOH HOH . I 7 HOH A 39 339 341 HOH HOH . I 7 HOH A 40 340 343 HOH HOH . I 7 HOH A 41 341 342 HOH HOH . I 7 HOH A 42 342 333 HOH HOH . I 7 HOH A 43 343 340 HOH HOH . I 7 HOH A 44 344 346 HOH HOH . I 7 HOH A 45 345 345 HOH HOH . I 7 HOH A 46 346 344 HOH HOH . I 7 HOH A 47 347 348 HOH HOH . I 7 HOH A 48 348 353 HOH HOH . I 7 HOH A 49 349 351 HOH HOH . I 7 HOH A 50 350 355 HOH HOH . I 7 HOH A 51 351 354 HOH HOH . I 7 HOH A 52 352 350 HOH HOH . I 7 HOH A 53 353 352 HOH HOH . I 7 HOH A 54 354 356 HOH HOH . I 7 HOH A 55 355 349 HOH HOH . I 7 HOH A 56 356 336 HOH HOH . I 7 HOH A 57 357 357 HOH HOH . I 7 HOH A 58 358 359 HOH HOH . I 7 HOH A 59 359 358 HOH HOH . I 7 HOH A 60 360 361 HOH HOH . I 7 HOH A 61 361 360 HOH HOH . I 7 HOH A 62 362 363 HOH HOH . I 7 HOH A 63 363 364 HOH HOH . I 7 HOH A 64 364 362 HOH HOH . I 7 HOH A 65 365 365 HOH HOH . I 7 HOH A 66 366 367 HOH HOH . I 7 HOH A 67 367 378 HOH HOH . I 7 HOH A 68 368 366 HOH HOH . I 7 HOH A 69 369 368 HOH HOH . I 7 HOH A 70 370 369 HOH HOH . I 7 HOH A 71 371 370 HOH HOH . I 7 HOH A 72 372 371 HOH HOH . I 7 HOH A 73 373 372 HOH HOH . I 7 HOH A 74 374 374 HOH HOH . I 7 HOH A 75 375 375 HOH HOH . I 7 HOH A 76 376 377 HOH HOH . I 7 HOH A 77 377 376 HOH HOH . I 7 HOH A 78 378 373 HOH HOH . I 7 HOH A 79 379 379 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . B 2 8.218 4.795 84.838 1 23.32 ? FE HEC 201 A 1 HETATM 2 C CHA HEC . . . B 2 9.254 1.876 86.344 1 19.65 ? CHA HEC 201 A 1 HETATM 3 C CHB HEC . . . B 2 10.824 6.469 86.319 1 27.12 ? CHB HEC 201 A 1 HETATM 4 C CHC HEC . . . B 2 7.38 7.651 83.066 1 22.74 ? CHC HEC 201 A 1 HETATM 5 C CHD HEC . . . B 2 5.352 3.304 83.807 1 21.37 ? CHD HEC 201 A 1 HETATM 6 N NA HEC . . . B 2 9.724 4.26 86.049 1 23.03 ? NA HEC 201 A 1 HETATM 7 C C1A HEC . . . B 2 10.001 3.013 86.564 1 20.97 ? C1A HEC 201 A 1 HETATM 8 C C2A HEC . . . B 2 11.197 3.082 87.38 1 23.17 ? C2A HEC 201 A 1 HETATM 9 C C3A HEC . . . B 2 11.619 4.347 87.367 1 20.15 ? C3A HEC 201 A 1 HETATM 10 C C4A HEC . . . B 2 10.719 5.106 86.547 1 23.57 ? C4A HEC 201 A 1 HETATM 11 C CMA HEC . . . B 2 12.864 4.933 88.082 1 24.25 ? CMA HEC 201 A 1 HETATM 12 C CAA HEC . . . B 2 11.786 1.882 88.141 1 23.73 ? CAA HEC 201 A 1 HETATM 13 C CBA HEC . . . B 2 11.09 1.787 89.528 1 21.13 ? CBA HEC 201 A 1 HETATM 14 C CGA HEC . . . B 2 11.687 0.823 90.531 1 22.85 ? CGA HEC 201 A 1 HETATM 15 O O1A HEC . . . B 2 11.028 0.635 91.588 1 23.59 ? O1A HEC 201 A 1 HETATM 16 O O2A HEC . . . B 2 12.764 0.286 90.205 1 24.87 ? O2A HEC 201 A 1 HETATM 17 N NB HEC . . . B 2 8.937 6.664 84.723 1 19.07 ? NB HEC 201 A 1 HETATM 18 C C1B HEC . . . B 2 10.019 7.159 85.448 1 25.71 ? C1B HEC 201 A 1 HETATM 19 C C2B HEC . . . B 2 10.19 8.529 85.122 1 22.31 ? C2B HEC 201 A 1 HETATM 20 C C3B HEC . . . B 2 9.26 8.845 84.222 1 22.54 ? C3B HEC 201 A 1 HETATM 21 C C4B HEC . . . B 2 8.443 7.68 83.958 1 21.94 ? C4B HEC 201 A 1 HETATM 22 C CMB HEC . . . B 2 11.315 9.381 85.8 1 20.85 ? CMB HEC 201 A 1 HETATM 23 C CAB HEC . . . B 2 9.097 10.258 83.574 1 22.4 ? CAB HEC 201 A 1 HETATM 24 C CBB HEC . . . B 2 10.357 10.629 82.744 1 25.44 ? CBB HEC 201 A 1 HETATM 25 N NC HEC . . . B 2 6.703 5.35 83.668 1 22.09 ? NC HEC 201 A 1 HETATM 26 C C1C HEC . . . B 2 6.524 6.552 83.024 1 20.56 ? C1C HEC 201 A 1 HETATM 27 C C2C HEC . . . B 2 5.274 6.558 82.281 1 21.69 ? C2C HEC 201 A 1 HETATM 28 C C3C HEC . . . B 2 4.705 5.353 82.499 1 19.38 ? C3C HEC 201 A 1 HETATM 29 C C4C HEC . . . B 2 5.579 4.584 83.353 1 20.43 ? C4C HEC 201 A 1 HETATM 30 C CMC HEC . . . B 2 4.793 7.782 81.468 1 23.35 ? CMC HEC 201 A 1 HETATM 31 C CAC HEC . . . B 2 3.312 4.788 82.005 1 20.87 ? CAC HEC 201 A 1 HETATM 32 C CBC HEC . . . B 2 2.936 5.121 80.556 1 23.01 ? CBC HEC 201 A 1 HETATM 33 N ND HEC . . . B 2 7.467 2.949 85.029 1 19.31 ? ND HEC 201 A 1 HETATM 34 C C1D HEC . . . B 2 6.24 2.541 84.515 1 21.17 ? C1D HEC 201 A 1 HETATM 35 C C2D HEC . . . B 2 6.076 1.152 84.844 1 19.38 ? C2D HEC 201 A 1 HETATM 36 C C3D HEC . . . B 2 7.126 0.751 85.552 1 22.15 ? C3D HEC 201 A 1 HETATM 37 C C4D HEC . . . B 2 8.034 1.891 85.692 1 20.28 ? C4D HEC 201 A 1 HETATM 38 C CMD HEC . . . B 2 4.799 0.371 84.406 1 21.3 ? CMD HEC 201 A 1 HETATM 39 C CAD HEC . . . B 2 7.412 -0.67 86.107 1 20.29 ? CAD HEC 201 A 1 HETATM 40 C CBD HEC . . . B 2 8.002 -1.57 85.003 1 20.44 ? CBD HEC 201 A 1 HETATM 41 C CGD HEC . . . B 2 8.047 -3.068 85.228 1 21.35 ? CGD HEC 201 A 1 HETATM 42 O O1D HEC . . . B 2 7.298 -3.518 86.136 1 21 ? O1D HEC 201 A 1 HETATM 43 O O2D HEC . . . B 2 8.818 -3.741 84.484 1 24.84 ? O2D HEC 201 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 43 #