data_5KKE # _model_server_result.job_id hwvGg6AHRddfdx_pMHEjWg _model_server_result.datetime_utc '2024-10-14 07:26:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kke # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":204}' # _entry.id 5KKE # _exptl.entry_id 5KKE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 494.573 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-CYCLOHEXYL-1-PENTYL-BETA-D-MALTOSIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KKE _cell.length_a 49.74 _cell.length_b 69.326 _cell.length_c 72.482 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KKE _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_557 x,-y,-z+2 1 0 0 0 -1 0 0 0 -1 0 0 144.964 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 19 A CYS 14 1_555 B CAB HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.821 ? metalc ? metalc1 A NE2 HIS 23 A HIS 18 1_555 B FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc2 B FE HEC . A HEC 201 1_555 I O HOH . A HOH 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? # _chem_comp.formula 'C23 H42 O11' _chem_comp.formula_weight 494.573 _chem_comp.id CM5 _chem_comp.mon_nstd_flag . _chem_comp.name 5-CYCLOHEXYL-1-PENTYL-BETA-D-MALTOSIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '5-CYCLOHEXYLPENTYL 4-O-ALPHA-D-GLUCOPYRANOSYL-BETA-D-GLUCOPYRANOSIDE;CYMAL-5' # _atom_sites.entry_id 5KKE _atom_sites.fract_transf_matrix[1][1] 0.020105 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014425 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013797 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEC A 1 201 201 HEC CHE . C 3 SO4 A 1 202 202 SO4 SO4 . D 3 SO4 A 1 203 203 SO4 SO4 . E 4 CM5 A 1 204 204 CM5 CM5 . F 5 CL A 1 205 205 CL CL . G 6 GOL A 1 206 206 GOL GOL . H 6 GOL A 1 207 207 GOL GOL . I 7 HOH A 1 301 301 HOH HOH . I 7 HOH A 2 302 306 HOH HOH . I 7 HOH A 3 303 302 HOH HOH . I 7 HOH A 4 304 307 HOH HOH . I 7 HOH A 5 305 303 HOH HOH . I 7 HOH A 6 306 309 HOH HOH . I 7 HOH A 7 307 304 HOH HOH . I 7 HOH A 8 308 310 HOH HOH . I 7 HOH A 9 309 305 HOH HOH . I 7 HOH A 10 310 308 HOH HOH . I 7 HOH A 11 311 312 HOH HOH . I 7 HOH A 12 312 313 HOH HOH . I 7 HOH A 13 313 311 HOH HOH . I 7 HOH A 14 314 316 HOH HOH . I 7 HOH A 15 315 315 HOH HOH . I 7 HOH A 16 316 314 HOH HOH . I 7 HOH A 17 317 318 HOH HOH . I 7 HOH A 18 318 317 HOH HOH . I 7 HOH A 19 319 320 HOH HOH . I 7 HOH A 20 320 319 HOH HOH . I 7 HOH A 21 321 321 HOH HOH . I 7 HOH A 22 322 322 HOH HOH . I 7 HOH A 23 323 323 HOH HOH . I 7 HOH A 24 324 327 HOH HOH . I 7 HOH A 25 325 324 HOH HOH . I 7 HOH A 26 326 329 HOH HOH . I 7 HOH A 27 327 326 HOH HOH . I 7 HOH A 28 328 347 HOH HOH . I 7 HOH A 29 329 334 HOH HOH . I 7 HOH A 30 330 330 HOH HOH . I 7 HOH A 31 331 332 HOH HOH . I 7 HOH A 32 332 325 HOH HOH . I 7 HOH A 33 333 335 HOH HOH . I 7 HOH A 34 334 328 HOH HOH . I 7 HOH A 35 335 337 HOH HOH . I 7 HOH A 36 336 331 HOH HOH . I 7 HOH A 37 337 338 HOH HOH . I 7 HOH A 38 338 339 HOH HOH . I 7 HOH A 39 339 341 HOH HOH . I 7 HOH A 40 340 343 HOH HOH . I 7 HOH A 41 341 342 HOH HOH . I 7 HOH A 42 342 333 HOH HOH . I 7 HOH A 43 343 340 HOH HOH . I 7 HOH A 44 344 346 HOH HOH . I 7 HOH A 45 345 345 HOH HOH . I 7 HOH A 46 346 344 HOH HOH . I 7 HOH A 47 347 348 HOH HOH . I 7 HOH A 48 348 353 HOH HOH . I 7 HOH A 49 349 351 HOH HOH . I 7 HOH A 50 350 355 HOH HOH . I 7 HOH A 51 351 354 HOH HOH . I 7 HOH A 52 352 350 HOH HOH . I 7 HOH A 53 353 352 HOH HOH . I 7 HOH A 54 354 356 HOH HOH . I 7 HOH A 55 355 349 HOH HOH . I 7 HOH A 56 356 336 HOH HOH . I 7 HOH A 57 357 357 HOH HOH . I 7 HOH A 58 358 359 HOH HOH . I 7 HOH A 59 359 358 HOH HOH . I 7 HOH A 60 360 361 HOH HOH . I 7 HOH A 61 361 360 HOH HOH . I 7 HOH A 62 362 363 HOH HOH . I 7 HOH A 63 363 364 HOH HOH . I 7 HOH A 64 364 362 HOH HOH . I 7 HOH A 65 365 365 HOH HOH . I 7 HOH A 66 366 367 HOH HOH . I 7 HOH A 67 367 378 HOH HOH . I 7 HOH A 68 368 366 HOH HOH . I 7 HOH A 69 369 368 HOH HOH . I 7 HOH A 70 370 369 HOH HOH . I 7 HOH A 71 371 370 HOH HOH . I 7 HOH A 72 372 371 HOH HOH . I 7 HOH A 73 373 372 HOH HOH . I 7 HOH A 74 374 374 HOH HOH . I 7 HOH A 75 375 375 HOH HOH . I 7 HOH A 76 376 377 HOH HOH . I 7 HOH A 77 377 376 HOH HOH . I 7 HOH A 78 378 373 HOH HOH . I 7 HOH A 79 379 379 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C7 CM5 . A . E 4 14.221 -2.949 86.219 0.45 31.45 ? C7 CM5 204 A 1 HETATM 2 C C7 CM5 . B . E 4 13.789 -3.2 85.754 0.55 32.52 ? C7 CM5 204 A 1 HETATM 3 C C8 CM5 . A . E 4 13.226 -3.355 87.306 0.45 24.88 ? C8 CM5 204 A 1 HETATM 4 C C8 CM5 . B . E 4 12.826 -3.853 86.742 0.55 29.9 ? C8 CM5 204 A 1 HETATM 5 C C9 CM5 . A . E 4 12.168 -2.282 87.587 0.45 22.21 ? C9 CM5 204 A 1 HETATM 6 C C9 CM5 . B . E 4 11.475 -3.144 86.925 0.55 24.65 ? C9 CM5 204 A 1 HETATM 7 C C10 CM5 . A . E 4 11.44 -1.848 86.311 0.45 29.73 ? C10 CM5 204 A 1 HETATM 8 C C10 CM5 . B . E 4 11.449 -1.614 86.756 0.55 26.25 ? C10 CM5 204 A 1 HETATM 9 C C11 CM5 . A . E 4 12.394 -1.475 85.17 0.45 31.39 ? C11 CM5 204 A 1 HETATM 10 C C11 CM5 . B . E 4 12.506 -1.022 85.813 0.55 29.27 ? C11 CM5 204 A 1 HETATM 11 C C6 CM5 . A . E 4 13.882 -1.639 85.499 0.45 33.92 ? C6 CM5 204 A 1 HETATM 12 C C6 CM5 . B . E 4 13.881 -1.687 85.919 0.55 34.8 ? C6 CM5 204 A 1 HETATM 13 C C5 CM5 . A . E 4 14.684 -1.56 84.173 0.45 31.73 ? C5 CM5 204 A 1 HETATM 14 C C5 CM5 . B . E 4 14.791 -1.113 84.801 0.55 30.39 ? C5 CM5 204 A 1 HETATM 15 C C4 CM5 . A . E 4 16.156 -1.974 84.433 0.45 32.68 ? C4 CM5 204 A 1 HETATM 16 C C4 CM5 . B . E 4 16.273 -1.51 85.054 0.55 31.84 ? C4 CM5 204 A 1 HETATM 17 C C3 CM5 . A . E 4 17.093 -1.065 83.594 0.45 33.71 ? C3 CM5 204 A 1 HETATM 18 C C3 CM5 . B . E 4 17.178 -0.846 83.979 0.55 34.47 ? C3 CM5 204 A 1 HETATM 19 C C2 CM5 . A . E 4 18.375 -1.874 83.29 0.45 37.68 ? C2 CM5 204 A 1 HETATM 20 C C2 CM5 . B . E 4 18.345 -1.821 83.689 0.55 36.83 ? C2 CM5 204 A 1 HETATM 21 C C1 CM5 . A . E 4 19.521 -0.922 82.864 0.45 40.38 ? C1 CM5 204 A 1 HETATM 22 C C1 CM5 . B . E 4 19.475 -1.102 82.911 0.55 40.29 ? C1 CM5 204 A 1 HETATM 23 O O12 CM5 . A . E 4 20.717 -1.687 82.866 0.45 40.23 ? O12 CM5 204 A 1 HETATM 24 O O12 CM5 . B . E 4 20.569 -2.004 82.812 0.55 38.49 ? O12 CM5 204 A 1 HETATM 25 C C13 CM5 . A . E 4 21.571 -1.383 81.837 0.45 42.51 ? C13 CM5 204 A 1 HETATM 26 C C13 CM5 . B . E 4 21.472 -1.655 81.839 0.55 42.49 ? C13 CM5 204 A 1 HETATM 27 C C18 CM5 . A . E 4 22.958 -1.885 82.203 0.45 44.57 ? C18 CM5 204 A 1 HETATM 28 C C18 CM5 . B . E 4 22.85 -2.191 82.202 0.55 43.84 ? C18 CM5 204 A 1 HETATM 29 O O22 CM5 . A . E 4 23.389 -1.242 83.413 0.45 43.4 ? O22 CM5 204 A 1 HETATM 30 O O22 CM5 . B . E 4 23.252 -1.69 83.487 0.55 42.86 ? O22 CM5 204 A 1 HETATM 31 C C17 CM5 . A . E 4 23.922 -1.589 81.109 0.45 48.4 ? C17 CM5 204 A 1 HETATM 32 C C17 CM5 . B . E 4 23.837 -1.772 81.169 0.55 48.46 ? C17 CM5 204 A 1 HETATM 33 O O21 CM5 . A . E 4 25.214 -2.136 81.489 0.45 47.06 ? O21 CM5 204 A 1 HETATM 34 O O21 CM5 . B . E 4 25.14 -2.296 81.548 0.55 45.95 ? O21 CM5 204 A 1 HETATM 35 O O14 CM5 . A . E 4 21.085 -2.04 80.587 0.45 45.31 ? O14 CM5 204 A 1 HETATM 36 O O14 CM5 . B . E 4 21.024 -2.223 80.532 0.55 44.19 ? O14 CM5 204 A 1 HETATM 37 C C15 CM5 . A . E 4 22.02 -1.817 79.461 0.45 55.11 ? C15 CM5 204 A 1 HETATM 38 C C15 CM5 . B . E 4 21.988 -1.901 79.455 0.55 55.44 ? C15 CM5 204 A 1 HETATM 39 C C19 CM5 . A . E 4 21.566 -2.646 78.304 0.45 60.01 ? C19 CM5 204 A 1 HETATM 40 C C19 CM5 . B . E 4 21.572 -2.64 78.225 0.55 60.05 ? C19 CM5 204 A 1 HETATM 41 O O20 CM5 . A . E 4 20.193 -2.449 78.097 0.45 61.18 ? O20 CM5 204 A 1 HETATM 42 O O20 CM5 . B . E 4 20.2 -2.441 78.008 0.55 61.05 ? O20 CM5 204 A 1 HETATM 43 C C16 CM5 . A . E 4 23.468 -2.185 79.813 0.45 54.62 ? C16 CM5 204 A 1 HETATM 44 C C16 CM5 . B . E 4 23.431 -2.282 79.82 0.55 54.7 ? C16 CM5 204 A 1 HETATM 45 O O23 CM5 . A . E 4 24.328 -1.717 78.746 0.45 57.96 ? O23 CM5 204 A 1 HETATM 46 O O23 CM5 . B . E 4 24.317 -1.748 78.808 0.55 57.5 ? O23 CM5 204 A 1 HETATM 47 C C24 CM5 . A . E 4 25.181 -2.731 78.354 0.45 62.56 ? C24 CM5 204 A 1 HETATM 48 C C24 CM5 . B . E 4 25.179 -2.741 78.379 0.55 62.5 ? C24 CM5 204 A 1 HETATM 49 O O25 CM5 . A . E 4 24.725 -3.249 77.049 0.45 65.27 ? O25 CM5 204 A 1 HETATM 50 O O25 CM5 . B . E 4 24.711 -3.241 77.071 0.55 65.08 ? O25 CM5 204 A 1 HETATM 51 C C26 CM5 . A . E 4 24.835 -2.227 75.98 0.45 69.02 ? C26 CM5 204 A 1 HETATM 52 C C26 CM5 . B . E 4 24.822 -2.213 76.008 0.55 68.99 ? C26 CM5 204 A 1 HETATM 53 C C30 CM5 . A . E 4 24.532 -2.876 74.666 0.45 70.36 ? C30 CM5 204 A 1 HETATM 54 C C30 CM5 . B . E 4 24.518 -2.857 74.69 0.55 70.27 ? C30 CM5 204 A 1 HETATM 55 O O31 CM5 . A . E 4 23.203 -3.327 74.67 0.45 72.2 ? O31 CM5 204 A 1 HETATM 56 O O31 CM5 . B . E 4 23.186 -3.3 74.691 0.55 72.27 ? O31 CM5 204 A 1 HETATM 57 C C27 CM5 . A . E 4 26.228 -1.588 75.918 0.45 70.82 ? C27 CM5 204 A 1 HETATM 58 C C27 CM5 . B . E 4 26.215 -1.574 75.947 0.55 70.91 ? C27 CM5 204 A 1 HETATM 59 O O32 CM5 . A . E 4 26.193 -0.473 75.004 0.45 71.86 ? O32 CM5 204 A 1 HETATM 60 O O32 CM5 . B . E 4 26.185 -0.459 75.033 0.55 71.84 ? O32 CM5 204 A 1 HETATM 61 C C28 CM5 . A . E 4 26.691 -1.103 77.244 0.45 68.79 ? C28 CM5 204 A 1 HETATM 62 C C28 CM5 . B . E 4 26.675 -1.09 77.275 0.55 68.86 ? C28 CM5 204 A 1 HETATM 63 O O33 CM5 . A . E 4 28.075 -0.642 77.131 0.45 68.27 ? O33 CM5 204 A 1 HETATM 64 O O33 CM5 . B . E 4 28.054 -0.612 77.162 0.55 67.99 ? O33 CM5 204 A 1 HETATM 65 C C29 CM5 . A . E 4 26.601 -2.168 78.278 0.45 63.94 ? C29 CM5 204 A 1 HETATM 66 C C29 CM5 . B . E 4 26.595 -2.162 78.302 0.55 63.98 ? C29 CM5 204 A 1 HETATM 67 O O34 CM5 . A . E 4 26.963 -1.63 79.563 0.45 57.3 ? O34 CM5 204 A 1 HETATM 68 O O34 CM5 . B . E 4 26.956 -1.633 79.592 0.55 56.23 ? O34 CM5 204 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 68 #