data_5KKE # _model_server_result.job_id adYo3TPm7GOQ5msC73fZTw _model_server_result.datetime_utc '2024-11-22 14:18:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kke # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":206}' # _entry.id 5KKE # _exptl.entry_id 5KKE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KKE _cell.length_a 49.74 _cell.length_b 69.326 _cell.length_c 72.482 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KKE _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_557 x,-y,-z+2 1 0 0 0 -1 0 0 0 -1 0 0 144.964 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 G N N ? 6 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 19 A CYS 14 1_555 B CAB HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.821 ? metalc ? metalc1 A NE2 HIS 23 A HIS 18 1_555 B FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc2 B FE HEC . A HEC 201 1_555 I O HOH . A HOH 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 207 n n C1 C2 GOL sing 208 n n C1 H11 GOL sing 209 n n C1 H12 GOL sing 210 n n O1 HO1 GOL sing 211 n n C2 O2 GOL sing 212 n n C2 C3 GOL sing 213 n n C2 H2 GOL sing 214 n n O2 HO2 GOL sing 215 n n C3 O3 GOL sing 216 n n C3 H31 GOL sing 217 n n C3 H32 GOL sing 218 n n O3 HO3 GOL sing 219 n n # _atom_sites.entry_id 5KKE _atom_sites.fract_transf_matrix[1][1] 0.020105 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014425 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013797 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEC A 1 201 201 HEC CHE . C 3 SO4 A 1 202 202 SO4 SO4 . D 3 SO4 A 1 203 203 SO4 SO4 . E 4 CM5 A 1 204 204 CM5 CM5 . F 5 CL A 1 205 205 CL CL . G 6 GOL A 1 206 206 GOL GOL . H 6 GOL A 1 207 207 GOL GOL . I 7 HOH A 1 301 301 HOH HOH . I 7 HOH A 2 302 306 HOH HOH . I 7 HOH A 3 303 302 HOH HOH . I 7 HOH A 4 304 307 HOH HOH . I 7 HOH A 5 305 303 HOH HOH . I 7 HOH A 6 306 309 HOH HOH . I 7 HOH A 7 307 304 HOH HOH . I 7 HOH A 8 308 310 HOH HOH . I 7 HOH A 9 309 305 HOH HOH . I 7 HOH A 10 310 308 HOH HOH . I 7 HOH A 11 311 312 HOH HOH . I 7 HOH A 12 312 313 HOH HOH . I 7 HOH A 13 313 311 HOH HOH . I 7 HOH A 14 314 316 HOH HOH . I 7 HOH A 15 315 315 HOH HOH . I 7 HOH A 16 316 314 HOH HOH . I 7 HOH A 17 317 318 HOH HOH . I 7 HOH A 18 318 317 HOH HOH . I 7 HOH A 19 319 320 HOH HOH . I 7 HOH A 20 320 319 HOH HOH . I 7 HOH A 21 321 321 HOH HOH . I 7 HOH A 22 322 322 HOH HOH . I 7 HOH A 23 323 323 HOH HOH . I 7 HOH A 24 324 327 HOH HOH . I 7 HOH A 25 325 324 HOH HOH . I 7 HOH A 26 326 329 HOH HOH . I 7 HOH A 27 327 326 HOH HOH . I 7 HOH A 28 328 347 HOH HOH . I 7 HOH A 29 329 334 HOH HOH . I 7 HOH A 30 330 330 HOH HOH . I 7 HOH A 31 331 332 HOH HOH . I 7 HOH A 32 332 325 HOH HOH . I 7 HOH A 33 333 335 HOH HOH . I 7 HOH A 34 334 328 HOH HOH . I 7 HOH A 35 335 337 HOH HOH . I 7 HOH A 36 336 331 HOH HOH . I 7 HOH A 37 337 338 HOH HOH . I 7 HOH A 38 338 339 HOH HOH . I 7 HOH A 39 339 341 HOH HOH . I 7 HOH A 40 340 343 HOH HOH . I 7 HOH A 41 341 342 HOH HOH . I 7 HOH A 42 342 333 HOH HOH . I 7 HOH A 43 343 340 HOH HOH . I 7 HOH A 44 344 346 HOH HOH . I 7 HOH A 45 345 345 HOH HOH . I 7 HOH A 46 346 344 HOH HOH . I 7 HOH A 47 347 348 HOH HOH . I 7 HOH A 48 348 353 HOH HOH . I 7 HOH A 49 349 351 HOH HOH . I 7 HOH A 50 350 355 HOH HOH . I 7 HOH A 51 351 354 HOH HOH . I 7 HOH A 52 352 350 HOH HOH . I 7 HOH A 53 353 352 HOH HOH . I 7 HOH A 54 354 356 HOH HOH . I 7 HOH A 55 355 349 HOH HOH . I 7 HOH A 56 356 336 HOH HOH . I 7 HOH A 57 357 357 HOH HOH . I 7 HOH A 58 358 359 HOH HOH . I 7 HOH A 59 359 358 HOH HOH . I 7 HOH A 60 360 361 HOH HOH . I 7 HOH A 61 361 360 HOH HOH . I 7 HOH A 62 362 363 HOH HOH . I 7 HOH A 63 363 364 HOH HOH . I 7 HOH A 64 364 362 HOH HOH . I 7 HOH A 65 365 365 HOH HOH . I 7 HOH A 66 366 367 HOH HOH . I 7 HOH A 67 367 378 HOH HOH . I 7 HOH A 68 368 366 HOH HOH . I 7 HOH A 69 369 368 HOH HOH . I 7 HOH A 70 370 369 HOH HOH . I 7 HOH A 71 371 370 HOH HOH . I 7 HOH A 72 372 371 HOH HOH . I 7 HOH A 73 373 372 HOH HOH . I 7 HOH A 74 374 374 HOH HOH . I 7 HOH A 75 375 375 HOH HOH . I 7 HOH A 76 376 377 HOH HOH . I 7 HOH A 77 377 376 HOH HOH . I 7 HOH A 78 378 373 HOH HOH . I 7 HOH A 79 379 379 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 6 1.019 2.038 99.02 1 65.21 ? C1 GOL 206 A 1 HETATM 2 O O1 GOL . . . G 6 0.233 2.163 97.856 1 45.78 ? O1 GOL 206 A 1 HETATM 3 C C2 GOL . . . G 6 1.708 3.37 99.292 1 66.53 ? C2 GOL 206 A 1 HETATM 4 O O2 GOL . . . G 6 2.089 3.462 100.649 1 71.45 ? O2 GOL 206 A 1 HETATM 5 C C3 GOL . . . G 6 2.96 3.43 98.436 1 56.69 ? C3 GOL 206 A 1 HETATM 6 O O3 GOL . . . G 6 3.732 4.546 98.83 1 45.69 ? O3 GOL 206 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #