data_5KKH
#
_model_server_result.job_id            U-Q_7pg-wGWBZpmFPLktmQ 
_model_server_result.datetime_utc      '2024-11-23 20:40:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5kkh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":303}' 
#
_entry.id    5KKH 
#
_exptl.entry_id    5KKH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              356.54 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          116.26 
_cell.angle_gamma         90 
_cell.entry_id            5KKH 
_cell.length_a            106.11 
_cell.length_b            61.27 
_cell.length_c            119.03 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5KKH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 J N N 
? 3 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 224 A LYS 224 1_555 G C15 RET . A RET 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale2 B NZ LYS 224 B LYS 224 1_555 K C15 RET . B RET 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.306 ? 
covale ? covale3 C NZ LYS 224 C LYS 224 1_555 O C15 RET . C RET 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.289 ? 
#
_chem_comp.formula           'C21 H40 O4' 
_chem_comp.formula_weight    356.54 
_chem_comp.id                OLB 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O19 OLB doub 224 n n 
C1 O20 OLB sing 225 n n 
C2 C1 OLB sing 226 n n 
C3 C2 OLB sing 227 n n 
C4 C3 OLB sing 228 n n 
C5 C4 OLB sing 229 n n 
C5 C6 OLB sing 230 n n 
O20 C21 OLB sing 231 n n 
C21 C22 OLB sing 232 n n 
C22 C24 OLB sing 233 n n 
O23 C22 OLB sing 234 n n 
C24 O25 OLB sing 235 n n 
C6 C7 OLB sing 236 n n 
C7 C8 OLB sing 237 n n 
C8 C9 OLB sing 238 n n 
C9 C10 OLB doub 239 z n 
C10 C11 OLB sing 240 n n 
C2 H2 OLB sing 241 n n 
C2 H2A OLB sing 242 n n 
C3 H3 OLB sing 243 n n 
C3 H3A OLB sing 244 n n 
C4 H4 OLB sing 245 n n 
C4 H4A OLB sing 246 n n 
C5 H5 OLB sing 247 n n 
C5 H5A OLB sing 248 n n 
C21 H21 OLB sing 249 n n 
C21 H21A OLB sing 250 n n 
C22 H22 OLB sing 251 n n 
O23 HO23 OLB sing 252 n n 
C24 H24 OLB sing 253 n n 
C24 H24A OLB sing 254 n n 
O25 HO25 OLB sing 255 n n 
C6 H16 OLB sing 256 n n 
C6 H17 OLB sing 257 n n 
C7 H18 OLB sing 258 n n 
C7 H19 OLB sing 259 n n 
C8 H20 OLB sing 260 n n 
C8 H211 OLB sing 261 n n 
C9 H221 OLB sing 262 n n 
C10 H23 OLB sing 263 n n 
C11 H241 OLB sing 264 n n 
C11 H25 OLB sing 265 n n 
C11 C12 OLB sing 266 n n 
C12 H26 OLB sing 267 n n 
C12 C13 OLB sing 268 n n 
C12 H27 OLB sing 269 n n 
C13 C14 OLB sing 270 n n 
C13 H28 OLB sing 271 n n 
C13 H29 OLB sing 272 n n 
C14 H30 OLB sing 273 n n 
C14 H31 OLB sing 274 n n 
C14 C15 OLB sing 275 n n 
C15 C16 OLB sing 276 n n 
C15 H32 OLB sing 277 n n 
C15 H33 OLB sing 278 n n 
C16 H34 OLB sing 279 n n 
C16 H35 OLB sing 280 n n 
C16 C17 OLB sing 281 n n 
C17 C18 OLB sing 282 n n 
C17 H36 OLB sing 283 n n 
C17 H37 OLB sing 284 n n 
C18 H38 OLB sing 285 n n 
C18 H39 OLB sing 286 n n 
C18 H40 OLB sing 287 n n 
#
_atom_sites.entry_id                     5KKH 
_atom_sites.fract_transf_matrix[1][1]    0.009424 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00465 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016321 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009368 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 OLC A 1 301 3 OLC OLC . 
E 3 OLB A 1 302 5 OLB OLB . 
F 2 OLC A 1 303 7 OLC OLC . 
G 4 RET A 1 304 301 RET RET . 
H 2 OLC B 1 301 4 OLC OLC . 
I 2 OLC B 1 302 6 OLC OLC . 
J 3 OLB B 1 303 9 OLB OLB . 
K 4 RET B 1 304 303 RET RET . 
L 2 OLC C 1 301 1 OLC OLC . 
M 2 OLC C 1 302 2 OLC OLC . 
N 3 OLB C 1 303 8 OLB OLB . 
O 4 RET C 1 304 302 RET RET . 
P 5 HOH A 1 401 19 HOH HOH . 
P 5 HOH A 2 402 69 HOH HOH . 
P 5 HOH A 3 403 67 HOH HOH . 
P 5 HOH A 4 404 43 HOH HOH . 
P 5 HOH A 5 405 4 HOH HOH . 
P 5 HOH A 6 406 75 HOH HOH . 
P 5 HOH A 7 407 50 HOH HOH . 
P 5 HOH A 8 408 18 HOH HOH . 
P 5 HOH A 9 409 1 HOH HOH . 
P 5 HOH A 10 410 47 HOH HOH . 
P 5 HOH A 11 411 87 HOH HOH . 
P 5 HOH A 12 412 49 HOH HOH . 
P 5 HOH A 13 413 36 HOH HOH . 
P 5 HOH A 14 414 22 HOH HOH . 
P 5 HOH A 15 415 5 HOH HOH . 
P 5 HOH A 16 416 59 HOH HOH . 
P 5 HOH A 17 417 14 HOH HOH . 
P 5 HOH A 18 418 70 HOH HOH . 
P 5 HOH A 19 419 21 HOH HOH . 
P 5 HOH A 20 420 76 HOH HOH . 
P 5 HOH A 21 421 63 HOH HOH . 
P 5 HOH A 22 422 80 HOH HOH . 
P 5 HOH A 23 423 20 HOH HOH . 
P 5 HOH A 24 424 2 HOH HOH . 
P 5 HOH A 25 425 51 HOH HOH . 
P 5 HOH A 26 426 45 HOH HOH . 
P 5 HOH A 27 427 42 HOH HOH . 
P 5 HOH A 28 428 7 HOH HOH . 
P 5 HOH A 29 429 79 HOH HOH . 
P 5 HOH A 30 430 33 HOH HOH . 
P 5 HOH A 31 431 60 HOH HOH . 
P 5 HOH A 32 432 77 HOH HOH . 
Q 5 HOH B 1 401 12 HOH HOH . 
Q 5 HOH B 2 402 37 HOH HOH . 
Q 5 HOH B 3 403 83 HOH HOH . 
Q 5 HOH B 4 404 16 HOH HOH . 
Q 5 HOH B 5 405 81 HOH HOH . 
Q 5 HOH B 6 406 15 HOH HOH . 
Q 5 HOH B 7 407 6 HOH HOH . 
Q 5 HOH B 8 408 8 HOH HOH . 
Q 5 HOH B 9 409 10 HOH HOH . 
Q 5 HOH B 10 410 11 HOH HOH . 
Q 5 HOH B 11 411 71 HOH HOH . 
Q 5 HOH B 12 412 55 HOH HOH . 
Q 5 HOH B 13 413 9 HOH HOH . 
Q 5 HOH B 14 414 24 HOH HOH . 
Q 5 HOH B 15 415 54 HOH HOH . 
Q 5 HOH B 16 416 74 HOH HOH . 
Q 5 HOH B 17 417 53 HOH HOH . 
Q 5 HOH B 18 418 85 HOH HOH . 
Q 5 HOH B 19 419 38 HOH HOH . 
Q 5 HOH B 20 420 13 HOH HOH . 
Q 5 HOH B 21 421 82 HOH HOH . 
Q 5 HOH B 22 422 62 HOH HOH . 
R 5 HOH C 1 401 39 HOH HOH . 
R 5 HOH C 2 402 66 HOH HOH . 
R 5 HOH C 3 403 28 HOH HOH . 
R 5 HOH C 4 404 32 HOH HOH . 
R 5 HOH C 5 405 61 HOH HOH . 
R 5 HOH C 6 406 68 HOH HOH . 
R 5 HOH C 7 407 65 HOH HOH . 
R 5 HOH C 8 408 23 HOH HOH . 
R 5 HOH C 9 409 25 HOH HOH . 
R 5 HOH C 10 410 73 HOH HOH . 
R 5 HOH C 11 411 26 HOH HOH . 
R 5 HOH C 12 412 86 HOH HOH . 
R 5 HOH C 13 413 44 HOH HOH . 
R 5 HOH C 14 414 58 HOH HOH . 
R 5 HOH C 15 415 34 HOH HOH . 
R 5 HOH C 16 416 29 HOH HOH . 
R 5 HOH C 17 417 72 HOH HOH . 
R 5 HOH C 18 418 48 HOH HOH . 
R 5 HOH C 19 419 41 HOH HOH . 
R 5 HOH C 20 420 17 HOH HOH . 
R 5 HOH C 21 421 57 HOH HOH . 
R 5 HOH C 22 422 27 HOH HOH . 
R 5 HOH C 23 423 56 HOH HOH . 
R 5 HOH C 24 424 31 HOH HOH . 
R 5 HOH C 25 425 30 HOH HOH . 
R 5 HOH C 26 426 64 HOH HOH . 
R 5 HOH C 27 427 40 HOH HOH . 
R 5 HOH C 28 428 46 HOH HOH . 
R 5 HOH C 29 429 84 HOH HOH . 
R 5 HOH C 30 430 78 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 OLB . . . J 3 -32.743 38.188 128.129 1 46 ? C1 OLB 303 B 1 
HETATM 2 C C2 OLB . . . J 3 -31.978 37.043 128.822 1 32.98 ? C2 OLB 303 B 1 
HETATM 3 C C3 OLB . . . J 3 -32.806 36.515 130.01 1 21.42 ? C3 OLB 303 B 1 
HETATM 4 C C4 OLB . . . J 3 -32.324 37.181 131.312 1 28.25 ? C4 OLB 303 B 1 
HETATM 5 C C5 OLB . . . J 3 -33.37 38.209 131.782 1 34.81 ? C5 OLB 303 B 1 
HETATM 6 O O19 OLB . . . J 3 -33.782 38.618 128.627 1 39.96 ? O19 OLB 303 B 1 
HETATM 7 O O20 OLB . . . J 3 -32.267 38.75 126.901 1 51.21 ? O20 OLB 303 B 1 
HETATM 8 C C21 OLB . . . J 3 -33.191 39.57 126.179 1 43.79 ? C21 OLB 303 B 1 
HETATM 9 C C22 OLB . . . J 3 -32.448 40.58 125.285 1 45.03 ? C22 OLB 303 B 1 
HETATM 10 O O23 OLB . . . J 3 -31.725 41.516 126.092 1 46.99 ? O23 OLB 303 B 1 
HETATM 11 C C24 OLB . . . J 3 -31.47 39.829 124.363 1 40.24 ? C24 OLB 303 B 1 
HETATM 12 O O25 OLB . . . J 3 -30.753 40.743 123.529 1 56.46 ? O25 OLB 303 B 1 
HETATM 13 C C6 OLB . . . J 3 -32.97 38.752 133.166 1 39.71 ? C6 OLB 303 B 1 
HETATM 14 C C7 OLB . . . J 3 -33.984 39.823 133.61 1 20.55 ? C7 OLB 303 B 1 
HETATM 15 C C8 OLB . . . J 3 -33.702 40.219 135.071 1 30.26 ? C8 OLB 303 B 1 
HETATM 16 C C9 OLB . . . J 3 -32.638 41.331 135.106 1 42.56 ? C9 OLB 303 B 1 
HETATM 17 C C10 OLB . . . J 3 -31.409 41.07 135.574 1 39.23 ? C10 OLB 303 B 1 
HETATM 18 C C11 OLB . . . J 3 -31.052 39.652 136.053 1 26.44 ? C11 OLB 303 B 1 
HETATM 19 C C12 OLB . . . J 3 -29.631 39.652 136.644 1 25.32 ? C12 OLB 303 B 1 
HETATM 20 C C13 OLB . . . J 3 -29.503 40.796 137.664 1 30.65 ? C13 OLB 303 B 1 
HETATM 21 C C14 OLB . . . J 3 -30.443 40.531 138.854 1 28.02 ? C14 OLB 303 B 1 
HETATM 22 C C15 OLB . . . J 3 -29.701 39.703 139.918 1 15.54 ? C15 OLB 303 B 1 
HETATM 23 C C16 OLB . . . J 3 -28.565 40.549 140.525 1 24.94 ? C16 OLB 303 B 1 
HETATM 24 C C17 OLB . . . J 3 -29.156 41.823 141.161 1 20.7 ? C17 OLB 303 B 1 
HETATM 25 C C18 OLB . . . J 3 -28.035 42.614 141.862 1 26.92 ? C18 OLB 303 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           280 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           25 
#