data_5KKH # _model_server_result.job_id AHM8yXr1Vczvuc4WUxh_pw _model_server_result.datetime_utc '2024-11-02 03:34:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kkh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":303}' # _entry.id 5KKH # _exptl.entry_id 5KKH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 116.26 _cell.angle_gamma 90 _cell.entry_id 5KKH _cell.length_a 106.11 _cell.length_b 61.27 _cell.length_c 119.03 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KKH _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 J N N ? 3 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 224 A LYS 224 1_555 G C15 RET . A RET 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale2 B NZ LYS 224 B LYS 224 1_555 K C15 RET . B RET 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.306 ? covale ? covale3 C NZ LYS 224 C LYS 224 1_555 O C15 RET . C RET 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.289 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLB _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O19 OLB doub 224 n n C1 O20 OLB sing 225 n n C2 C1 OLB sing 226 n n C3 C2 OLB sing 227 n n C4 C3 OLB sing 228 n n C5 C4 OLB sing 229 n n C5 C6 OLB sing 230 n n O20 C21 OLB sing 231 n n C21 C22 OLB sing 232 n n C22 C24 OLB sing 233 n n O23 C22 OLB sing 234 n n C24 O25 OLB sing 235 n n C6 C7 OLB sing 236 n n C7 C8 OLB sing 237 n n C8 C9 OLB sing 238 n n C9 C10 OLB doub 239 z n C10 C11 OLB sing 240 n n C2 H2 OLB sing 241 n n C2 H2A OLB sing 242 n n C3 H3 OLB sing 243 n n C3 H3A OLB sing 244 n n C4 H4 OLB sing 245 n n C4 H4A OLB sing 246 n n C5 H5 OLB sing 247 n n C5 H5A OLB sing 248 n n C21 H21 OLB sing 249 n n C21 H21A OLB sing 250 n n C22 H22 OLB sing 251 n n O23 HO23 OLB sing 252 n n C24 H24 OLB sing 253 n n C24 H24A OLB sing 254 n n O25 HO25 OLB sing 255 n n C6 H16 OLB sing 256 n n C6 H17 OLB sing 257 n n C7 H18 OLB sing 258 n n C7 H19 OLB sing 259 n n C8 H20 OLB sing 260 n n C8 H211 OLB sing 261 n n C9 H221 OLB sing 262 n n C10 H23 OLB sing 263 n n C11 H241 OLB sing 264 n n C11 H25 OLB sing 265 n n C11 C12 OLB sing 266 n n C12 H26 OLB sing 267 n n C12 C13 OLB sing 268 n n C12 H27 OLB sing 269 n n C13 C14 OLB sing 270 n n C13 H28 OLB sing 271 n n C13 H29 OLB sing 272 n n C14 H30 OLB sing 273 n n C14 H31 OLB sing 274 n n C14 C15 OLB sing 275 n n C15 C16 OLB sing 276 n n C15 H32 OLB sing 277 n n C15 H33 OLB sing 278 n n C16 H34 OLB sing 279 n n C16 H35 OLB sing 280 n n C16 C17 OLB sing 281 n n C17 C18 OLB sing 282 n n C17 H36 OLB sing 283 n n C17 H37 OLB sing 284 n n C18 H38 OLB sing 285 n n C18 H39 OLB sing 286 n n C18 H40 OLB sing 287 n n # _atom_sites.entry_id 5KKH _atom_sites.fract_transf_matrix[1][1] 0.009424 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00465 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016321 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009368 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 OLC A 1 301 3 OLC OLC . E 3 OLB A 1 302 5 OLB OLB . F 2 OLC A 1 303 7 OLC OLC . G 4 RET A 1 304 301 RET RET . H 2 OLC B 1 301 4 OLC OLC . I 2 OLC B 1 302 6 OLC OLC . J 3 OLB B 1 303 9 OLB OLB . K 4 RET B 1 304 303 RET RET . L 2 OLC C 1 301 1 OLC OLC . M 2 OLC C 1 302 2 OLC OLC . N 3 OLB C 1 303 8 OLB OLB . O 4 RET C 1 304 302 RET RET . P 5 HOH A 1 401 19 HOH HOH . P 5 HOH A 2 402 69 HOH HOH . P 5 HOH A 3 403 67 HOH HOH . P 5 HOH A 4 404 43 HOH HOH . P 5 HOH A 5 405 4 HOH HOH . P 5 HOH A 6 406 75 HOH HOH . P 5 HOH A 7 407 50 HOH HOH . P 5 HOH A 8 408 18 HOH HOH . P 5 HOH A 9 409 1 HOH HOH . P 5 HOH A 10 410 47 HOH HOH . P 5 HOH A 11 411 87 HOH HOH . P 5 HOH A 12 412 49 HOH HOH . P 5 HOH A 13 413 36 HOH HOH . P 5 HOH A 14 414 22 HOH HOH . P 5 HOH A 15 415 5 HOH HOH . P 5 HOH A 16 416 59 HOH HOH . P 5 HOH A 17 417 14 HOH HOH . P 5 HOH A 18 418 70 HOH HOH . P 5 HOH A 19 419 21 HOH HOH . P 5 HOH A 20 420 76 HOH HOH . P 5 HOH A 21 421 63 HOH HOH . P 5 HOH A 22 422 80 HOH HOH . P 5 HOH A 23 423 20 HOH HOH . P 5 HOH A 24 424 2 HOH HOH . P 5 HOH A 25 425 51 HOH HOH . P 5 HOH A 26 426 45 HOH HOH . P 5 HOH A 27 427 42 HOH HOH . P 5 HOH A 28 428 7 HOH HOH . P 5 HOH A 29 429 79 HOH HOH . P 5 HOH A 30 430 33 HOH HOH . P 5 HOH A 31 431 60 HOH HOH . P 5 HOH A 32 432 77 HOH HOH . Q 5 HOH B 1 401 12 HOH HOH . Q 5 HOH B 2 402 37 HOH HOH . Q 5 HOH B 3 403 83 HOH HOH . Q 5 HOH B 4 404 16 HOH HOH . Q 5 HOH B 5 405 81 HOH HOH . Q 5 HOH B 6 406 15 HOH HOH . Q 5 HOH B 7 407 6 HOH HOH . Q 5 HOH B 8 408 8 HOH HOH . Q 5 HOH B 9 409 10 HOH HOH . Q 5 HOH B 10 410 11 HOH HOH . Q 5 HOH B 11 411 71 HOH HOH . Q 5 HOH B 12 412 55 HOH HOH . Q 5 HOH B 13 413 9 HOH HOH . Q 5 HOH B 14 414 24 HOH HOH . Q 5 HOH B 15 415 54 HOH HOH . Q 5 HOH B 16 416 74 HOH HOH . Q 5 HOH B 17 417 53 HOH HOH . Q 5 HOH B 18 418 85 HOH HOH . Q 5 HOH B 19 419 38 HOH HOH . Q 5 HOH B 20 420 13 HOH HOH . Q 5 HOH B 21 421 82 HOH HOH . Q 5 HOH B 22 422 62 HOH HOH . R 5 HOH C 1 401 39 HOH HOH . R 5 HOH C 2 402 66 HOH HOH . R 5 HOH C 3 403 28 HOH HOH . R 5 HOH C 4 404 32 HOH HOH . R 5 HOH C 5 405 61 HOH HOH . R 5 HOH C 6 406 68 HOH HOH . R 5 HOH C 7 407 65 HOH HOH . R 5 HOH C 8 408 23 HOH HOH . R 5 HOH C 9 409 25 HOH HOH . R 5 HOH C 10 410 73 HOH HOH . R 5 HOH C 11 411 26 HOH HOH . R 5 HOH C 12 412 86 HOH HOH . R 5 HOH C 13 413 44 HOH HOH . R 5 HOH C 14 414 58 HOH HOH . R 5 HOH C 15 415 34 HOH HOH . R 5 HOH C 16 416 29 HOH HOH . R 5 HOH C 17 417 72 HOH HOH . R 5 HOH C 18 418 48 HOH HOH . R 5 HOH C 19 419 41 HOH HOH . R 5 HOH C 20 420 17 HOH HOH . R 5 HOH C 21 421 57 HOH HOH . R 5 HOH C 22 422 27 HOH HOH . R 5 HOH C 23 423 56 HOH HOH . R 5 HOH C 24 424 31 HOH HOH . R 5 HOH C 25 425 30 HOH HOH . R 5 HOH C 26 426 64 HOH HOH . R 5 HOH C 27 427 40 HOH HOH . R 5 HOH C 28 428 46 HOH HOH . R 5 HOH C 29 429 84 HOH HOH . R 5 HOH C 30 430 78 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OLB . . . N 3 -44.299 18.311 124.266 1 47.85 ? C1 OLB 303 C 1 HETATM 2 C C2 OLB . . . N 3 -44.121 18.927 125.666 1 37.07 ? C2 OLB 303 C 1 HETATM 3 C C3 OLB . . . N 3 -43.421 17.917 126.596 1 34.48 ? C3 OLB 303 C 1 HETATM 4 C C4 OLB . . . N 3 -43.024 18.618 127.907 1 42.57 ? C4 OLB 303 C 1 HETATM 5 C C5 OLB . . . N 3 -42.581 17.575 128.944 1 39.36 ? C5 OLB 303 C 1 HETATM 6 O O19 OLB . . . N 3 -44.999 17.318 124.073 1 53.11 ? O19 OLB 303 C 1 HETATM 7 O O20 OLB . . . N 3 -43.628 18.991 123.201 1 53.95 ? O20 OLB 303 C 1 HETATM 8 C C21 OLB . . . N 3 -43.61 18.503 121.858 1 47.43 ? C21 OLB 303 C 1 HETATM 9 C C22 OLB . . . N 3 -42.611 19.366 121.064 1 46.69 ? C22 OLB 303 C 1 HETATM 10 O O23 OLB . . . N 3 -41.352 19.392 121.741 1 56.24 ? O23 OLB 303 C 1 HETATM 11 C C24 OLB . . . N 3 -42.415 18.764 119.66 1 39.29 ? C24 OLB 303 C 1 HETATM 12 O O25 OLB . . . N 3 -41.538 19.567 118.865 1 48.2 ? O25 OLB 303 C 1 HETATM 13 C C6 OLB . . . N 3 -42.736 18.161 130.362 1 31.12 ? C6 OLB 303 C 1 HETATM 14 C C7 OLB . . . N 3 -42.216 17.15 131.401 1 41.52 ? C7 OLB 303 C 1 HETATM 15 C C8 OLB . . . N 3 -42.559 17.644 132.819 1 21.13 ? C8 OLB 303 C 1 HETATM 16 C C9 OLB . . . N 3 -44.021 17.288 133.15 1 21.31 ? C9 OLB 303 C 1 HETATM 17 C C10 OLB . . . N 3 -44.38 17.027 134.417 1 19.8 ? C10 OLB 303 C 1 HETATM 18 C C11 OLB . . . N 3 -43.329 17.092 135.542 1 36.84 ? C11 OLB 303 C 1 HETATM 19 C C12 OLB . . . N 3 -43.849 17.99 136.679 1 30.27 ? C12 OLB 303 C 1 HETATM 20 C C13 OLB . . . N 3 -44.938 17.24 137.469 1 27.75 ? C13 OLB 303 C 1 HETATM 21 C C14 OLB . . . N 3 -45.285 18.033 138.744 1 38.42 ? C14 OLB 303 C 1 HETATM 22 C C15 OLB . . . N 3 -46.483 17.372 139.45 1 28.58 ? C15 OLB 303 C 1 HETATM 23 C C16 OLB . . . N 3 -46.897 18.223 140.668 1 35.17 ? C16 OLB 303 C 1 HETATM 24 C C17 OLB . . . N 3 -45.861 18.048 141.794 1 26.97 ? C17 OLB 303 C 1 HETATM 25 C C18 OLB . . . N 3 -46.278 18.894 143.011 1 25.28 ? C18 OLB 303 C 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 252 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 25 #