data_5KKI # _model_server_result.job_id eeHiEPpNLFtd0xGOBlqSXQ _model_server_result.datetime_utc '2024-11-23 22:25:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kki # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":208}' # _entry.id 5KKI # _exptl.entry_id 5KKI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.489 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KKI _cell.length_a 77.82 _cell.length_b 77.82 _cell.length_c 38.68 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KKI _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 1 A,B,C,D,E,F,G,H,I,J 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 -y,-x,-z+1/2 0 -1 0 -1 0 0 0 0 -1 0 0 19.34 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc1 A O SER 60 A SER 60 1_555 B NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc2 A O CYS 64 A CYS 64 1_555 B NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc3 A OG SER 72 A SER 72 1_555 B NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc4 A O ARG 73 A ARG 73 1_555 B NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.563 ? metalc ? metalc5 B NA NA . A NA 201 1_555 J O HOH . A HOH 352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc6 B NA NA . A NA 201 1_555 J O HOH . A HOH 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? # _chem_comp.formula 'C18 H38 O9' _chem_comp.formula_weight 398.489 _chem_comp.id PE5 _chem_comp.mon_nstd_flag . _chem_comp.name 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '2-(2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL;POLYETHYLENE GLYCOL PEG400' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C48 C50 PE5 sing 244 n n C48 H481 PE5 sing 245 n n C48 H482 PE5 sing 246 n n C48 H483 PE5 sing 247 n n C50 O1 PE5 sing 248 n n C50 H501 PE5 sing 249 n n C50 H502 PE5 sing 250 n n O1 C1 PE5 sing 251 n n C1 C2 PE5 sing 252 n n C1 H11 PE5 sing 253 n n C1 H12 PE5 sing 254 n n C2 O2 PE5 sing 255 n n C2 H21 PE5 sing 256 n n C2 H22 PE5 sing 257 n n O2 C3 PE5 sing 258 n n C3 C4 PE5 sing 259 n n C3 H31 PE5 sing 260 n n C3 H32 PE5 sing 261 n n C4 O3 PE5 sing 262 n n C4 H41 PE5 sing 263 n n C4 H42 PE5 sing 264 n n O3 C5 PE5 sing 265 n n C5 C6 PE5 sing 266 n n C5 H51 PE5 sing 267 n n C5 H52A PE5 sing 268 n n C6 O4 PE5 sing 269 n n C6 H61 PE5 sing 270 n n C6 H62 PE5 sing 271 n n O4 C7 PE5 sing 272 n n C7 C8 PE5 sing 273 n n C7 H71 PE5 sing 274 n n C7 H72 PE5 sing 275 n n C8 O5 PE5 sing 276 n n C8 H81 PE5 sing 277 n n C8 H82 PE5 sing 278 n n O5 C9 PE5 sing 279 n n C9 C10 PE5 sing 280 n n C9 H91 PE5 sing 281 n n C9 H92 PE5 sing 282 n n C10 O6 PE5 sing 283 n n C10 H101 PE5 sing 284 n n C10 H102 PE5 sing 285 n n O6 C11 PE5 sing 286 n n C11 C12 PE5 sing 287 n n C11 H111 PE5 sing 288 n n C11 H112 PE5 sing 289 n n C12 O7 PE5 sing 290 n n C12 H121 PE5 sing 291 n n C12 H122 PE5 sing 292 n n O7 C13 PE5 sing 293 n n C13 C14 PE5 sing 294 n n C13 H131 PE5 sing 295 n n C13 H132 PE5 sing 296 n n C14 O8 PE5 sing 297 n n C14 H141 PE5 sing 298 n n C14 H142 PE5 sing 299 n n O8 C15 PE5 sing 300 n n C15 C16 PE5 sing 301 n n C15 H151 PE5 sing 302 n n C15 H152 PE5 sing 303 n n C16 O52 PE5 sing 304 n n C16 H161 PE5 sing 305 n n C16 H162 PE5 sing 306 n n O52 H52 PE5 sing 307 n n # _atom_sites.entry_id 5KKI _atom_sites.fract_transf_matrix[1][1] 0.01285 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01285 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025853 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 201 1 NA NA . C 3 CL A 1 202 1 CL CL . D 3 CL A 1 203 2 CL CL . E 3 CL A 1 204 3 CL CL . F 3 CL A 1 205 4 CL CL . G 3 CL A 1 206 5 CL CL . H 4 ACY A 1 207 1 ACY ACY . I 5 PE5 A 1 208 1 PE5 PE5 . J 6 HOH A 1 301 112 HOH HOH . J 6 HOH A 2 302 108 HOH HOH . J 6 HOH A 3 303 116 HOH HOH . J 6 HOH A 4 304 115 HOH HOH . J 6 HOH A 5 305 105 HOH HOH . J 6 HOH A 6 306 111 HOH HOH . J 6 HOH A 7 307 78 HOH HOH . J 6 HOH A 8 308 86 HOH HOH . J 6 HOH A 9 309 13 HOH HOH . J 6 HOH A 10 310 37 HOH HOH . J 6 HOH A 11 311 54 HOH HOH . J 6 HOH A 12 312 40 HOH HOH . J 6 HOH A 13 313 2 HOH HOH . J 6 HOH A 14 314 20 HOH HOH . J 6 HOH A 15 315 34 HOH HOH . J 6 HOH A 16 316 14 HOH HOH . J 6 HOH A 17 317 16 HOH HOH . J 6 HOH A 18 318 31 HOH HOH . J 6 HOH A 19 319 11 HOH HOH . J 6 HOH A 20 320 1 HOH HOH . J 6 HOH A 21 321 5 HOH HOH . J 6 HOH A 22 322 4 HOH HOH . J 6 HOH A 23 323 74 HOH HOH . J 6 HOH A 24 324 79 HOH HOH . J 6 HOH A 25 325 52 HOH HOH . J 6 HOH A 26 326 106 HOH HOH . J 6 HOH A 27 327 71 HOH HOH . J 6 HOH A 28 328 39 HOH HOH . J 6 HOH A 29 329 64 HOH HOH . J 6 HOH A 30 330 60 HOH HOH . J 6 HOH A 31 331 110 HOH HOH . J 6 HOH A 32 332 61 HOH HOH . J 6 HOH A 33 333 30 HOH HOH . J 6 HOH A 34 334 77 HOH HOH . J 6 HOH A 35 335 101 HOH HOH . J 6 HOH A 36 336 55 HOH HOH . J 6 HOH A 37 337 32 HOH HOH . J 6 HOH A 38 338 24 HOH HOH . J 6 HOH A 39 339 9 HOH HOH . J 6 HOH A 40 340 3 HOH HOH . J 6 HOH A 41 341 67 HOH HOH . J 6 HOH A 42 342 114 HOH HOH . J 6 HOH A 43 343 21 HOH HOH . J 6 HOH A 44 344 26 HOH HOH . J 6 HOH A 45 345 33 HOH HOH . J 6 HOH A 46 346 7 HOH HOH . J 6 HOH A 47 347 19 HOH HOH . J 6 HOH A 48 348 43 HOH HOH . J 6 HOH A 49 349 45 HOH HOH . J 6 HOH A 50 350 29 HOH HOH . J 6 HOH A 51 351 62 HOH HOH . J 6 HOH A 52 352 12 HOH HOH . J 6 HOH A 53 353 118 HOH HOH . J 6 HOH A 54 354 84 HOH HOH . J 6 HOH A 55 355 68 HOH HOH . J 6 HOH A 56 356 28 HOH HOH . J 6 HOH A 57 357 23 HOH HOH . J 6 HOH A 58 358 17 HOH HOH . J 6 HOH A 59 359 57 HOH HOH . J 6 HOH A 60 360 49 HOH HOH . J 6 HOH A 61 361 8 HOH HOH . J 6 HOH A 62 362 10 HOH HOH . J 6 HOH A 63 363 36 HOH HOH . J 6 HOH A 64 364 109 HOH HOH . J 6 HOH A 65 365 90 HOH HOH . J 6 HOH A 66 366 18 HOH HOH . J 6 HOH A 67 367 56 HOH HOH . J 6 HOH A 68 368 6 HOH HOH . J 6 HOH A 69 369 66 HOH HOH . J 6 HOH A 70 370 102 HOH HOH . J 6 HOH A 71 371 80 HOH HOH . J 6 HOH A 72 372 51 HOH HOH . J 6 HOH A 73 373 50 HOH HOH . J 6 HOH A 74 374 48 HOH HOH . J 6 HOH A 75 375 46 HOH HOH . J 6 HOH A 76 376 58 HOH HOH . J 6 HOH A 77 377 107 HOH HOH . J 6 HOH A 78 378 65 HOH HOH . J 6 HOH A 79 379 53 HOH HOH . J 6 HOH A 80 380 59 HOH HOH . J 6 HOH A 81 381 75 HOH HOH . J 6 HOH A 82 382 22 HOH HOH . J 6 HOH A 83 383 92 HOH HOH . J 6 HOH A 84 384 76 HOH HOH . J 6 HOH A 85 385 113 HOH HOH . J 6 HOH A 86 386 98 HOH HOH . J 6 HOH A 87 387 42 HOH HOH . J 6 HOH A 88 388 96 HOH HOH . J 6 HOH A 89 389 91 HOH HOH . J 6 HOH A 90 390 99 HOH HOH . J 6 HOH A 91 391 15 HOH HOH . J 6 HOH A 92 392 41 HOH HOH . J 6 HOH A 93 393 93 HOH HOH . J 6 HOH A 94 394 70 HOH HOH . J 6 HOH A 95 395 38 HOH HOH . J 6 HOH A 96 396 27 HOH HOH . J 6 HOH A 97 397 88 HOH HOH . J 6 HOH A 98 398 63 HOH HOH . J 6 HOH A 99 399 95 HOH HOH . J 6 HOH A 100 400 81 HOH HOH . J 6 HOH A 101 401 83 HOH HOH . J 6 HOH A 102 402 35 HOH HOH . J 6 HOH A 103 403 119 HOH HOH . J 6 HOH A 104 404 82 HOH HOH . J 6 HOH A 105 405 47 HOH HOH . J 6 HOH A 106 406 44 HOH HOH . J 6 HOH A 107 407 72 HOH HOH . J 6 HOH A 108 408 69 HOH HOH . J 6 HOH A 109 409 104 HOH HOH . J 6 HOH A 110 410 73 HOH HOH . J 6 HOH A 111 411 85 HOH HOH . J 6 HOH A 112 412 103 HOH HOH . J 6 HOH A 113 413 120 HOH HOH . J 6 HOH A 114 414 89 HOH HOH . J 6 HOH A 115 415 117 HOH HOH . J 6 HOH A 116 416 100 HOH HOH . J 6 HOH A 117 417 25 HOH HOH . J 6 HOH A 118 418 94 HOH HOH . J 6 HOH A 119 419 87 HOH HOH . J 6 HOH A 120 420 97 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O3 PE5 . . . I 5 -0.787 30.165 26.108 1 45.27 ? O3 PE5 208 A 1 HETATM 2 C C5 PE5 . . . I 5 -0.221 31.396 25.771 1 35.9 ? C5 PE5 208 A 1 HETATM 3 C C6 PE5 . . . I 5 1.322 31.261 25.542 1 42.15 ? C6 PE5 208 A 1 HETATM 4 O O4 PE5 . . . I 5 1.585 30.376 24.455 1 50.1 ? O4 PE5 208 A 1 HETATM 5 C C7 PE5 . . . I 5 2.57 30.856 23.534 1 39.28 ? C7 PE5 208 A 1 HETATM 6 C C8 PE5 . . . I 5 3.811 29.895 23.555 1 34.87 ? C8 PE5 208 A 1 HETATM 7 O O5 PE5 . . . I 5 3.505 28.723 24.222 1 37.77 ? O5 PE5 208 A 1 HETATM 8 C C9 PE5 . . . I 5 4.534 28.314 25.128 1 36.19 ? C9 PE5 208 A 1 HETATM 9 C C10 PE5 . . . I 5 4.09 26.985 25.79 1 30.35 ? C10 PE5 208 A 1 HETATM 10 O O6 PE5 . . . I 5 4.878 26.768 26.969 1 43.55 ? O6 PE5 208 A 1 HETATM 11 C C11 PE5 . . . I 5 4.106 26.748 28.2 1 41.23 ? C11 PE5 208 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 11 #